Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4892

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4891 and PfGW456L13_4892 are separated by 6 nucleotidesPfGW456L13_4892 and PfGW456L13_4893 are separated by 16 nucleotides PfGW456L13_4891 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 5,462,895 to 5,464,673 _4891 PfGW456L13_4892 - FIG005548: transport protein, at 5,464,680 to 5,467,199 _4892 PfGW456L13_4893 - FIG002465: BNR repeat protein, at 5,467,216 to 5,468,307 _4893 Position (kb) 5464 5465 5466 5467 5468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5463.790 kb on + strand, within PfGW456L13_4891at 5463.790 kb on + strand, within PfGW456L13_4891at 5463.790 kb on + strand, within PfGW456L13_4891at 5463.790 kb on + strand, within PfGW456L13_4891at 5463.791 kb on - strand, within PfGW456L13_4891at 5463.791 kb on - strand, within PfGW456L13_4891at 5463.791 kb on - strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.106 kb on - strand, within PfGW456L13_4891at 5464.106 kb on - strand, within PfGW456L13_4891at 5464.106 kb on - strand, within PfGW456L13_4891at 5464.106 kb on - strand, within PfGW456L13_4891at 5464.207 kb on + strand, within PfGW456L13_4891at 5464.207 kb on + strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.223 kb on - strand, within PfGW456L13_4891at 5464.223 kb on - strand, within PfGW456L13_4891at 5464.423 kb on + strand, within PfGW456L13_4891at 5464.423 kb on + strand, within PfGW456L13_4891at 5464.424 kb on - strand, within PfGW456L13_4891at 5464.663 kb on + strandat 5464.663 kb on + strandat 5464.664 kb on - strandat 5464.664 kb on - strandat 5464.664 kb on - strandat 5464.681 kb on + strandat 5464.682 kb on - strandat 5464.789 kb on + strandat 5464.790 kb on - strandat 5465.026 kb on + strand, within PfGW456L13_4892at 5465.026 kb on + strand, within PfGW456L13_4892at 5465.027 kb on - strand, within PfGW456L13_4892at 5465.027 kb on - strand, within PfGW456L13_4892at 5465.027 kb on - strand, within PfGW456L13_4892at 5465.215 kb on + strand, within PfGW456L13_4892at 5465.215 kb on + strand, within PfGW456L13_4892at 5465.215 kb on + strand, within PfGW456L13_4892at 5465.215 kb on + strand, within PfGW456L13_4892at 5465.215 kb on + strand, within PfGW456L13_4892at 5465.215 kb on + strand, within PfGW456L13_4892at 5465.216 kb on - strand, within PfGW456L13_4892at 5465.216 kb on - strand, within PfGW456L13_4892at 5465.216 kb on - strand, within PfGW456L13_4892at 5465.216 kb on - strand, within PfGW456L13_4892at 5465.221 kb on + strand, within PfGW456L13_4892at 5465.221 kb on + strand, within PfGW456L13_4892at 5465.221 kb on + strand, within PfGW456L13_4892at 5465.221 kb on + strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.467 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.522 kb on - strand, within PfGW456L13_4892at 5465.522 kb on - strand, within PfGW456L13_4892at 5465.522 kb on - strand, within PfGW456L13_4892at 5465.522 kb on - strand, within PfGW456L13_4892at 5465.522 kb on - strand, within PfGW456L13_4892at 5465.522 kb on - strand, within PfGW456L13_4892at 5465.525 kb on + strand, within PfGW456L13_4892at 5465.525 kb on + strand, within PfGW456L13_4892at 5465.526 kb on - strand, within PfGW456L13_4892at 5465.526 kb on - strand, within PfGW456L13_4892at 5465.526 kb on - strand, within PfGW456L13_4892at 5465.632 kb on + strand, within PfGW456L13_4892at 5465.632 kb on + strand, within PfGW456L13_4892at 5465.632 kb on + strand, within PfGW456L13_4892at 5465.633 kb on - strand, within PfGW456L13_4892at 5465.710 kb on + strand, within PfGW456L13_4892at 5465.710 kb on + strand, within PfGW456L13_4892at 5465.711 kb on - strand, within PfGW456L13_4892at 5465.728 kb on + strand, within PfGW456L13_4892at 5465.833 kb on - strand, within PfGW456L13_4892at 5465.965 kb on + strand, within PfGW456L13_4892at 5465.965 kb on + strand, within PfGW456L13_4892at 5465.965 kb on + strand, within PfGW456L13_4892at 5465.966 kb on - strand, within PfGW456L13_4892at 5465.966 kb on - strand, within PfGW456L13_4892at 5465.966 kb on - strand, within PfGW456L13_4892at 5465.966 kb on - strand, within PfGW456L13_4892at 5466.143 kb on - strand, within PfGW456L13_4892at 5466.260 kb on - strand, within PfGW456L13_4892at 5466.365 kb on - strand, within PfGW456L13_4892at 5466.370 kb on + strand, within PfGW456L13_4892at 5466.370 kb on + strand, within PfGW456L13_4892at 5466.370 kb on + strand, within PfGW456L13_4892at 5466.370 kb on + strand, within PfGW456L13_4892at 5466.370 kb on + strand, within PfGW456L13_4892at 5466.371 kb on - strand, within PfGW456L13_4892at 5466.371 kb on - strand, within PfGW456L13_4892at 5466.371 kb on - strand, within PfGW456L13_4892at 5466.371 kb on - strand, within PfGW456L13_4892at 5466.371 kb on - strand, within PfGW456L13_4892at 5466.371 kb on - strand, within PfGW456L13_4892at 5466.481 kb on + strand, within PfGW456L13_4892at 5466.482 kb on - strand, within PfGW456L13_4892at 5466.482 kb on - strand, within PfGW456L13_4892at 5466.482 kb on - strand, within PfGW456L13_4892at 5466.482 kb on - strand, within PfGW456L13_4892at 5466.482 kb on - strand, within PfGW456L13_4892at 5466.482 kb on - strand, within PfGW456L13_4892at 5466.583 kb on + strandat 5466.583 kb on + strand, within PfGW456L13_4892at 5466.584 kb on - strand, within PfGW456L13_4892at 5466.584 kb on - strand, within PfGW456L13_4892at 5466.584 kb on - strand, within PfGW456L13_4892at 5466.584 kb on - strand, within PfGW456L13_4892at 5466.661 kb on - strand, within PfGW456L13_4892at 5466.733 kb on + strand, within PfGW456L13_4892at 5466.733 kb on + strand, within PfGW456L13_4892at 5466.734 kb on - strand, within PfGW456L13_4892at 5466.884 kb on - strand, within PfGW456L13_4892at 5466.899 kb on + strand, within PfGW456L13_4892at 5466.900 kb on - strand, within PfGW456L13_4892at 5466.985 kb on + strandat 5466.985 kb on + strandat 5466.985 kb on + strandat 5466.985 kb on + strandat 5466.986 kb on - strandat 5466.986 kb on - strandat 5466.986 kb on - strandat 5466.986 kb on - strandat 5466.986 kb on - strandat 5467.190 kb on + strandat 5467.401 kb on - strand, within PfGW456L13_4893at 5467.514 kb on + strand, within PfGW456L13_4893at 5467.514 kb on + strand, within PfGW456L13_4893at 5467.514 kb on + strand, within PfGW456L13_4893at 5467.515 kb on - strand, within PfGW456L13_4893at 5467.515 kb on - strand, within PfGW456L13_4893at 5467.515 kb on - strand, within PfGW456L13_4893at 5467.515 kb on - strand, within PfGW456L13_4893at 5467.640 kb on + strand, within PfGW456L13_4893at 5467.641 kb on - strand, within PfGW456L13_4893at 5467.759 kb on + strand, within PfGW456L13_4893at 5467.760 kb on - strand, within PfGW456L13_4893at 5467.773 kb on - strand, within PfGW456L13_4893at 5467.904 kb on + strand, within PfGW456L13_4893at 5467.904 kb on + strand, within PfGW456L13_4893at 5467.904 kb on + strand, within PfGW456L13_4893at 5468.110 kb on - strand, within PfGW456L13_4893

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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5,463,790 + PfGW456L13_4891 0.50 -0.0
5,463,790 + PfGW456L13_4891 0.50 +1.4
5,463,790 + PfGW456L13_4891 0.50 -0.1
5,463,790 + PfGW456L13_4891 0.50 -0.5
5,463,791 - PfGW456L13_4891 0.50 -0.0
5,463,791 - PfGW456L13_4891 0.50 +1.2
5,463,791 - PfGW456L13_4891 0.50 +0.5
5,464,105 + PfGW456L13_4891 0.68 +0.9
5,464,105 + PfGW456L13_4891 0.68 -0.3
5,464,105 + PfGW456L13_4891 0.68 +0.6
5,464,105 + PfGW456L13_4891 0.68 -2.1
5,464,105 + PfGW456L13_4891 0.68 -0.8
5,464,105 + PfGW456L13_4891 0.68 -0.4
5,464,105 + PfGW456L13_4891 0.68 -0.1
5,464,106 - PfGW456L13_4891 0.68 +0.9
5,464,106 - PfGW456L13_4891 0.68 -0.6
5,464,106 - PfGW456L13_4891 0.68 +1.4
5,464,106 - PfGW456L13_4891 0.68 -1.6
5,464,207 + PfGW456L13_4891 0.74 +0.7
5,464,207 + PfGW456L13_4891 0.74 +0.8
5,464,208 - PfGW456L13_4891 0.74 -1.4
5,464,208 - PfGW456L13_4891 0.74 +0.8
5,464,208 - PfGW456L13_4891 0.74 -1.2
5,464,208 - PfGW456L13_4891 0.74 +0.1
5,464,208 - PfGW456L13_4891 0.74 +0.3
5,464,208 - PfGW456L13_4891 0.74 -1.0
5,464,208 - PfGW456L13_4891 0.74 +0.0
5,464,208 - PfGW456L13_4891 0.74 +1.2
5,464,208 - PfGW456L13_4891 0.74 +0.6
5,464,223 - PfGW456L13_4891 0.75 +0.2
5,464,223 - PfGW456L13_4891 0.75 +0.5
5,464,423 + PfGW456L13_4891 0.86 -0.0
5,464,423 + PfGW456L13_4891 0.86 +0.3
5,464,424 - PfGW456L13_4891 0.86 -0.4
5,464,663 + -0.9
5,464,663 + +0.9
5,464,664 - -0.4
5,464,664 - -0.6
5,464,664 - -0.4
5,464,681 + +0.8
5,464,682 - -0.1
5,464,789 + +0.8
5,464,790 - +0.3
5,465,026 + PfGW456L13_4892 0.14 -2.9
5,465,026 + PfGW456L13_4892 0.14 +0.5
5,465,027 - PfGW456L13_4892 0.14 +0.6
5,465,027 - PfGW456L13_4892 0.14 +0.1
5,465,027 - PfGW456L13_4892 0.14 +0.6
5,465,215 + PfGW456L13_4892 0.21 +1.6
5,465,215 + PfGW456L13_4892 0.21 +0.1
5,465,215 + PfGW456L13_4892 0.21 +1.6
5,465,215 + PfGW456L13_4892 0.21 +0.2
5,465,215 + PfGW456L13_4892 0.21 +0.8
5,465,215 + PfGW456L13_4892 0.21 +1.7
5,465,216 - PfGW456L13_4892 0.21 -0.3
5,465,216 - PfGW456L13_4892 0.21 +0.8
5,465,216 - PfGW456L13_4892 0.21 +0.4
5,465,216 - PfGW456L13_4892 0.21 +0.8
5,465,221 + PfGW456L13_4892 0.21 +1.5
5,465,221 + PfGW456L13_4892 0.21 -0.7
5,465,221 + PfGW456L13_4892 0.21 +1.2
5,465,221 + PfGW456L13_4892 0.21 -0.3
5,465,222 - PfGW456L13_4892 0.22 -0.1
5,465,222 - PfGW456L13_4892 0.22 -0.1
5,465,222 - PfGW456L13_4892 0.22 -1.4
5,465,222 - PfGW456L13_4892 0.22 +1.0
5,465,222 - PfGW456L13_4892 0.22 +0.5
5,465,222 - PfGW456L13_4892 0.22 -1.6
5,465,222 - PfGW456L13_4892 0.22 +1.2
5,465,222 - PfGW456L13_4892 0.22 -1.6
5,465,467 + PfGW456L13_4892 0.31 +0.4
5,465,521 + PfGW456L13_4892 0.33 -0.3
5,465,521 + PfGW456L13_4892 0.33 +0.6
5,465,521 + PfGW456L13_4892 0.33 +0.9
5,465,521 + PfGW456L13_4892 0.33 +0.6
5,465,521 + PfGW456L13_4892 0.33 +0.4
5,465,521 + PfGW456L13_4892 0.33 -0.5
5,465,521 + PfGW456L13_4892 0.33 -0.0
5,465,521 + PfGW456L13_4892 0.33 -0.8
5,465,521 + PfGW456L13_4892 0.33 +0.8
5,465,521 + PfGW456L13_4892 0.33 -0.2
5,465,521 + PfGW456L13_4892 0.33 -0.8
5,465,522 - PfGW456L13_4892 0.33 -0.1
5,465,522 - PfGW456L13_4892 0.33 +1.2
5,465,522 - PfGW456L13_4892 0.33 +0.4
5,465,522 - PfGW456L13_4892 0.33 +0.8
5,465,522 - PfGW456L13_4892 0.33 +1.4
5,465,522 - PfGW456L13_4892 0.33 +0.3
5,465,525 + PfGW456L13_4892 0.34 +0.1
5,465,525 + PfGW456L13_4892 0.34 +0.1
5,465,526 - PfGW456L13_4892 0.34 -0.0
5,465,526 - PfGW456L13_4892 0.34 +0.5
5,465,526 - PfGW456L13_4892 0.34 +1.3
5,465,632 + PfGW456L13_4892 0.38 -2.3
5,465,632 + PfGW456L13_4892 0.38 -2.3
5,465,632 + PfGW456L13_4892 0.38 -0.1
5,465,633 - PfGW456L13_4892 0.38 +0.4
5,465,710 + PfGW456L13_4892 0.41 -0.1
5,465,710 + PfGW456L13_4892 0.41 +0.5
5,465,711 - PfGW456L13_4892 0.41 +0.2
5,465,728 + PfGW456L13_4892 0.42 -0.1
5,465,833 - PfGW456L13_4892 0.46 +2.6
5,465,965 + PfGW456L13_4892 0.51 +0.1
5,465,965 + PfGW456L13_4892 0.51 +0.8
5,465,965 + PfGW456L13_4892 0.51 +0.3
5,465,966 - PfGW456L13_4892 0.51 +0.3
5,465,966 - PfGW456L13_4892 0.51 -2.1
5,465,966 - PfGW456L13_4892 0.51 +0.5
5,465,966 - PfGW456L13_4892 0.51 -1.8
5,466,143 - PfGW456L13_4892 0.58 -0.0
5,466,260 - PfGW456L13_4892 0.63 +0.8
5,466,365 - PfGW456L13_4892 0.67 -0.2
5,466,370 + PfGW456L13_4892 0.67 +0.4
5,466,370 + PfGW456L13_4892 0.67 +0.0
5,466,370 + PfGW456L13_4892 0.67 +0.7
5,466,370 + PfGW456L13_4892 0.67 -0.3
5,466,370 + PfGW456L13_4892 0.67 +0.1
5,466,371 - PfGW456L13_4892 0.67 +0.9
5,466,371 - PfGW456L13_4892 0.67 +0.2
5,466,371 - PfGW456L13_4892 0.67 -0.9
5,466,371 - PfGW456L13_4892 0.67 +0.4
5,466,371 - PfGW456L13_4892 0.67 -0.2
5,466,371 - PfGW456L13_4892 0.67 +0.1
5,466,481 + PfGW456L13_4892 0.71 +0.2
5,466,482 - PfGW456L13_4892 0.72 -0.4
5,466,482 - PfGW456L13_4892 0.72 -0.0
5,466,482 - PfGW456L13_4892 0.72 -0.1
5,466,482 - PfGW456L13_4892 0.72 +0.0
5,466,482 - PfGW456L13_4892 0.72 -1.1
5,466,482 - PfGW456L13_4892 0.72 +0.7
5,466,583 + +1.4
5,466,583 + PfGW456L13_4892 0.76 +0.4
5,466,584 - PfGW456L13_4892 0.76 +1.0
5,466,584 - PfGW456L13_4892 0.76 +1.0
5,466,584 - PfGW456L13_4892 0.76 +2.5
5,466,584 - PfGW456L13_4892 0.76 +0.0
5,466,661 - PfGW456L13_4892 0.79 +0.4
5,466,733 + PfGW456L13_4892 0.81 -1.9
5,466,733 + PfGW456L13_4892 0.81 +0.9
5,466,734 - PfGW456L13_4892 0.82 +0.3
5,466,884 - PfGW456L13_4892 0.87 -0.1
5,466,899 + PfGW456L13_4892 0.88 +0.9
5,466,900 - PfGW456L13_4892 0.88 -1.4
5,466,985 + +0.1
5,466,985 + +0.5
5,466,985 + -0.2
5,466,985 + +1.6
5,466,986 - +1.5
5,466,986 - -0.7
5,466,986 - -0.5
5,466,986 - -0.4
5,466,986 - +2.2
5,467,190 + -1.2
5,467,401 - PfGW456L13_4893 0.17 -0.2
5,467,514 + PfGW456L13_4893 0.27 -0.2
5,467,514 + PfGW456L13_4893 0.27 +0.2
5,467,514 + PfGW456L13_4893 0.27 +1.3
5,467,515 - PfGW456L13_4893 0.27 +2.0
5,467,515 - PfGW456L13_4893 0.27 +0.9
5,467,515 - PfGW456L13_4893 0.27 +0.5
5,467,515 - PfGW456L13_4893 0.27 -1.5
5,467,640 + PfGW456L13_4893 0.39 +1.5
5,467,641 - PfGW456L13_4893 0.39 +1.3
5,467,759 + PfGW456L13_4893 0.50 +0.1
5,467,760 - PfGW456L13_4893 0.50 -0.1
5,467,773 - PfGW456L13_4893 0.51 +0.8
5,467,904 + PfGW456L13_4893 0.63 -0.9
5,467,904 + PfGW456L13_4893 0.63 +0.1
5,467,904 + PfGW456L13_4893 0.63 +0.5
5,468,110 - PfGW456L13_4893 0.82 +0.7

Or see this region's nucleotide sequence