Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_450

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_449 and PfGW456L13_450 are separated by 23 nucleotidesPfGW456L13_450 and PfGW456L13_451 overlap by 1 nucleotides PfGW456L13_449 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 512,555 to 513,787 _449 PfGW456L13_450 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 513,811 to 515,004 _450 PfGW456L13_451 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 515,004 to 516,362 _451 Position (kb) 513 514 515 516Strain fitness (log2 ratio) -2 -1 0 1at 512.891 kb on - strand, within PfGW456L13_449at 513.056 kb on + strand, within PfGW456L13_449at 513.057 kb on - strand, within PfGW456L13_449at 513.057 kb on - strand, within PfGW456L13_449at 513.057 kb on - strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.725 kb on + strandat 513.810 kb on + strandat 513.810 kb on + strandat 513.810 kb on + strandat 513.811 kb on - strandat 513.811 kb on - strandat 513.811 kb on - strandat 513.811 kb on - strandat 513.811 kb on - strandat 513.811 kb on - strandat 513.811 kb on - strandat 514.093 kb on + strand, within PfGW456L13_450at 514.093 kb on + strand, within PfGW456L13_450at 514.093 kb on + strand, within PfGW456L13_450at 514.093 kb on + strand, within PfGW456L13_450at 514.094 kb on - strand, within PfGW456L13_450at 514.094 kb on - strand, within PfGW456L13_450at 514.094 kb on - strand, within PfGW456L13_450at 514.106 kb on + strand, within PfGW456L13_450at 514.106 kb on + strand, within PfGW456L13_450at 514.147 kb on + strand, within PfGW456L13_450at 514.148 kb on - strand, within PfGW456L13_450at 514.148 kb on - strand, within PfGW456L13_450at 514.204 kb on - strand, within PfGW456L13_450at 514.277 kb on - strand, within PfGW456L13_450at 514.294 kb on + strand, within PfGW456L13_450at 514.294 kb on + strand, within PfGW456L13_450at 514.295 kb on - strand, within PfGW456L13_450at 514.295 kb on - strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.451 kb on - strand, within PfGW456L13_450at 514.451 kb on - strand, within PfGW456L13_450at 514.942 kb on + strandat 514.942 kb on + strandat 514.960 kb on + strandat 514.960 kb on + strandat 514.960 kb on + strandat 514.960 kb on + strandat 514.960 kb on + strandat 514.961 kb on - strandat 514.961 kb on - strandat 514.961 kb on - strandat 514.961 kb on - strandat 514.963 kb on + strandat 514.963 kb on + strandat 514.963 kb on + strandat 514.964 kb on - strandat 515.096 kb on + strandat 515.109 kb on + strandat 515.110 kb on - strandat 515.200 kb on - strand, within PfGW456L13_451at 515.200 kb on - strand, within PfGW456L13_451at 515.337 kb on + strand, within PfGW456L13_451at 515.338 kb on - strand, within PfGW456L13_451at 515.338 kb on - strand, within PfGW456L13_451at 515.338 kb on - strand, within PfGW456L13_451at 515.349 kb on + strand, within PfGW456L13_451at 515.349 kb on + strand, within PfGW456L13_451at 515.484 kb on + strand, within PfGW456L13_451at 515.485 kb on - strand, within PfGW456L13_451at 515.502 kb on + strand, within PfGW456L13_451at 515.502 kb on + strand, within PfGW456L13_451at 515.503 kb on - strand, within PfGW456L13_451at 515.517 kb on + strand, within PfGW456L13_451at 515.628 kb on + strand, within PfGW456L13_451at 515.628 kb on + strand, within PfGW456L13_451at 515.629 kb on - strand, within PfGW456L13_451at 515.629 kb on - strand, within PfGW456L13_451at 515.629 kb on - strand, within PfGW456L13_451at 515.629 kb on - strand, within PfGW456L13_451at 515.643 kb on + strand, within PfGW456L13_451at 515.644 kb on - strand, within PfGW456L13_451at 515.644 kb on - strand, within PfGW456L13_451at 515.917 kb on - strand, within PfGW456L13_451at 515.917 kb on - strand, within PfGW456L13_451at 515.917 kb on - strand, within PfGW456L13_451at 515.917 kb on - strand, within PfGW456L13_451at 515.980 kb on - strand, within PfGW456L13_451at 516.003 kb on + strand, within PfGW456L13_451at 516.003 kb on + strand, within PfGW456L13_451at 516.004 kb on - strand, within PfGW456L13_451at 516.004 kb on - strand, within PfGW456L13_451

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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512,891 - PfGW456L13_449 0.27 -0.8
513,056 + PfGW456L13_449 0.41 +1.2
513,057 - PfGW456L13_449 0.41 +1.3
513,057 - PfGW456L13_449 0.41 +1.6
513,057 - PfGW456L13_449 0.41 +0.5
513,428 + PfGW456L13_449 0.71 +0.2
513,428 + PfGW456L13_449 0.71 -0.0
513,428 + PfGW456L13_449 0.71 -1.1
513,428 + PfGW456L13_449 0.71 -2.2
513,428 + PfGW456L13_449 0.71 -0.3
513,428 + PfGW456L13_449 0.71 -0.4
513,429 - PfGW456L13_449 0.71 +0.4
513,429 - PfGW456L13_449 0.71 -1.1
513,429 - PfGW456L13_449 0.71 +0.7
513,429 - PfGW456L13_449 0.71 -1.3
513,429 - PfGW456L13_449 0.71 -0.5
513,429 - PfGW456L13_449 0.71 -1.3
513,725 + -0.8
513,810 + -1.5
513,810 + +0.7
513,810 + -2.0
513,811 - +0.1
513,811 - -2.4
513,811 - +0.5
513,811 - -0.7
513,811 - -0.2
513,811 - +0.6
513,811 - +0.3
514,093 + PfGW456L13_450 0.24 -0.5
514,093 + PfGW456L13_450 0.24 -0.7
514,093 + PfGW456L13_450 0.24 -0.0
514,093 + PfGW456L13_450 0.24 +0.6
514,094 - PfGW456L13_450 0.24 +0.7
514,094 - PfGW456L13_450 0.24 -0.3
514,094 - PfGW456L13_450 0.24 -0.3
514,106 + PfGW456L13_450 0.25 -0.1
514,106 + PfGW456L13_450 0.25 +0.4
514,147 + PfGW456L13_450 0.28 -1.6
514,148 - PfGW456L13_450 0.28 -0.8
514,148 - PfGW456L13_450 0.28 -1.5
514,204 - PfGW456L13_450 0.33 -1.5
514,277 - PfGW456L13_450 0.39 +0.6
514,294 + PfGW456L13_450 0.40 +0.3
514,294 + PfGW456L13_450 0.40 -0.7
514,295 - PfGW456L13_450 0.41 -0.6
514,295 - PfGW456L13_450 0.41 -2.2
514,450 + PfGW456L13_450 0.54 +0.2
514,450 + PfGW456L13_450 0.54 +0.1
514,450 + PfGW456L13_450 0.54 -0.2
514,450 + PfGW456L13_450 0.54 -0.3
514,450 + PfGW456L13_450 0.54 +1.0
514,451 - PfGW456L13_450 0.54 +0.1
514,451 - PfGW456L13_450 0.54 +0.1
514,942 + +1.3
514,942 + -1.0
514,960 + +0.0
514,960 + +0.6
514,960 + +1.2
514,960 + -2.2
514,960 + -0.3
514,961 - +1.6
514,961 - +0.7
514,961 - -0.3
514,961 - -0.6
514,963 + +0.3
514,963 + +0.6
514,963 + -0.1
514,964 - -0.6
515,096 + +1.0
515,109 + -0.7
515,110 - -2.1
515,200 - PfGW456L13_451 0.14 -0.2
515,200 - PfGW456L13_451 0.14 +0.5
515,337 + PfGW456L13_451 0.25 -0.1
515,338 - PfGW456L13_451 0.25 +1.1
515,338 - PfGW456L13_451 0.25 +0.1
515,338 - PfGW456L13_451 0.25 +0.7
515,349 + PfGW456L13_451 0.25 -0.5
515,349 + PfGW456L13_451 0.25 +0.3
515,484 + PfGW456L13_451 0.35 +0.6
515,485 - PfGW456L13_451 0.35 -0.6
515,502 + PfGW456L13_451 0.37 -0.5
515,502 + PfGW456L13_451 0.37 -0.2
515,503 - PfGW456L13_451 0.37 +0.9
515,517 + PfGW456L13_451 0.38 -1.1
515,628 + PfGW456L13_451 0.46 -1.1
515,628 + PfGW456L13_451 0.46 -0.9
515,629 - PfGW456L13_451 0.46 +0.3
515,629 - PfGW456L13_451 0.46 -1.5
515,629 - PfGW456L13_451 0.46 -0.9
515,629 - PfGW456L13_451 0.46 -0.1
515,643 + PfGW456L13_451 0.47 -0.8
515,644 - PfGW456L13_451 0.47 -0.9
515,644 - PfGW456L13_451 0.47 +0.9
515,917 - PfGW456L13_451 0.67 -1.3
515,917 - PfGW456L13_451 0.67 +0.3
515,917 - PfGW456L13_451 0.67 +0.1
515,917 - PfGW456L13_451 0.67 +0.3
515,980 - PfGW456L13_451 0.72 +0.5
516,003 + PfGW456L13_451 0.74 -0.6
516,003 + PfGW456L13_451 0.74 -0.7
516,004 - PfGW456L13_451 0.74 +1.7
516,004 - PfGW456L13_451 0.74 +0.6

Or see this region's nucleotide sequence