Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4168 and PfGW456L13_4169 overlap by 36 nucleotides PfGW456L13_4169 and PfGW456L13_4170 are separated by 130 nucleotides PfGW456L13_4170 and PfGW456L13_4171 are separated by 131 nucleotides PfGW456L13_4171 and PfGW456L13_4172 are separated by 78 nucleotides PfGW456L13_4172 and PfGW456L13_4173 are separated by 77 nucleotides
PfGW456L13_4168 - Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p, at 4,683,018 to 4,683,926
_4168
PfGW456L13_4169 - hypothetical protein, at 4,683,891 to 4,684,034
_4169
PfGW456L13_4170 - Isochorismatase (EC 3.3.2.1), at 4,684,165 to 4,684,755
_4170
PfGW456L13_4171 - FIG00956876: hypothetical protein, at 4,684,887 to 4,685,207
_4171
PfGW456L13_4172 - Smr domain protein, at 4,685,286 to 4,685,843
_4172
PfGW456L13_4173 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 4,685,921 to 4,686,466
_4173
Position (kb) 4684
4685
4686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4683.890 kb on + strand at 4683.891 kb on - strand at 4683.961 kb on + strand, within PfGW456L13_4169 at 4683.961 kb on + strand, within PfGW456L13_4169 at 4683.962 kb on - strand, within PfGW456L13_4169 at 4683.962 kb on - strand, within PfGW456L13_4169 at 4683.962 kb on - strand, within PfGW456L13_4169 at 4683.996 kb on + strand, within PfGW456L13_4169 at 4684.011 kb on - strand, within PfGW456L13_4169 at 4684.011 kb on - strand, within PfGW456L13_4169 at 4684.011 kb on - strand, within PfGW456L13_4169 at 4684.033 kb on - strand at 4684.037 kb on + strand at 4684.038 kb on - strand at 4684.038 kb on - strand at 4684.038 kb on - strand at 4684.055 kb on + strand at 4684.090 kb on + strand at 4684.090 kb on + strand at 4684.090 kb on + strand at 4684.090 kb on + strand at 4684.090 kb on + strand at 4684.091 kb on - strand at 4684.091 kb on - strand at 4684.091 kb on - strand at 4684.207 kb on + strand at 4684.208 kb on - strand at 4684.208 kb on - strand at 4684.265 kb on - strand, within PfGW456L13_4170 at 4684.265 kb on - strand, within PfGW456L13_4170 at 4684.654 kb on + strand, within PfGW456L13_4170 at 4684.655 kb on - strand, within PfGW456L13_4170 at 4684.655 kb on - strand, within PfGW456L13_4170 at 4684.655 kb on - strand, within PfGW456L13_4170 at 4684.655 kb on - strand, within PfGW456L13_4170 at 4684.655 kb on - strand, within PfGW456L13_4170 at 4684.655 kb on - strand, within PfGW456L13_4170 at 4684.655 kb on - strand, within PfGW456L13_4170 at 4684.667 kb on + strand, within PfGW456L13_4170 at 4684.667 kb on + strand, within PfGW456L13_4170 at 4684.815 kb on - strand at 4684.824 kb on - strand at 4684.895 kb on - strand at 4685.129 kb on - strand, within PfGW456L13_4171 at 4685.129 kb on - strand, within PfGW456L13_4171 at 4685.129 kb on - strand, within PfGW456L13_4171 at 4685.749 kb on + strand, within PfGW456L13_4172 at 4685.750 kb on - strand, within PfGW456L13_4172 at 4685.750 kb on - strand, within PfGW456L13_4172 at 4685.799 kb on + strand at 4685.799 kb on + strand at 4685.800 kb on - strand at 4685.800 kb on - strand at 4685.800 kb on - strand at 4685.800 kb on - strand at 4685.841 kb on + strand at 4685.842 kb on - strand at 4685.883 kb on + strand at 4685.900 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 4,683,890 + +1.5 4,683,891 - -0.2 4,683,961 + PfGW456L13_4169 0.49 +0.3 4,683,961 + PfGW456L13_4169 0.49 +1.9 4,683,962 - PfGW456L13_4169 0.49 +0.9 4,683,962 - PfGW456L13_4169 0.49 -0.5 4,683,962 - PfGW456L13_4169 0.49 -0.4 4,683,996 + PfGW456L13_4169 0.73 +1.4 4,684,011 - PfGW456L13_4169 0.83 +0.4 4,684,011 - PfGW456L13_4169 0.83 +0.3 4,684,011 - PfGW456L13_4169 0.83 +0.3 4,684,033 - +0.2 4,684,037 + +2.1 4,684,038 - +0.1 4,684,038 - -0.8 4,684,038 - +0.2 4,684,055 + +0.7 4,684,090 + +0.4 4,684,090 + -0.8 4,684,090 + +1.2 4,684,090 + +0.1 4,684,090 + -0.3 4,684,091 - -2.5 4,684,091 - -0.5 4,684,091 - -1.8 4,684,207 + -1.8 4,684,208 - -2.7 4,684,208 - -0.9 4,684,265 - PfGW456L13_4170 0.17 -2.4 4,684,265 - PfGW456L13_4170 0.17 -1.9 4,684,654 + PfGW456L13_4170 0.83 -3.5 4,684,655 - PfGW456L13_4170 0.83 -1.9 4,684,655 - PfGW456L13_4170 0.83 -0.1 4,684,655 - PfGW456L13_4170 0.83 -2.3 4,684,655 - PfGW456L13_4170 0.83 -2.0 4,684,655 - PfGW456L13_4170 0.83 -0.6 4,684,655 - PfGW456L13_4170 0.83 -2.0 4,684,655 - PfGW456L13_4170 0.83 -2.7 4,684,667 + PfGW456L13_4170 0.85 -1.1 4,684,667 + PfGW456L13_4170 0.85 +0.8 4,684,815 - -0.3 4,684,824 - -1.3 4,684,895 - -1.6 4,685,129 - PfGW456L13_4171 0.75 -1.6 4,685,129 - PfGW456L13_4171 0.75 -1.8 4,685,129 - PfGW456L13_4171 0.75 -0.4 4,685,749 + PfGW456L13_4172 0.83 -2.9 4,685,750 - PfGW456L13_4172 0.83 -1.4 4,685,750 - PfGW456L13_4172 0.83 -0.5 4,685,799 + -2.0 4,685,799 + +0.2 4,685,800 - +0.0 4,685,800 - -2.5 4,685,800 - -0.8 4,685,800 - -2.4 4,685,841 + +0.2 4,685,842 - +1.2 4,685,883 + +0.6 4,685,900 + +0.4
Or see this region's nucleotide sequence