Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1741

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1739 and PfGW456L13_1740 are separated by 171 nucleotidesPfGW456L13_1740 and PfGW456L13_1741 are separated by 265 nucleotidesPfGW456L13_1741 and PfGW456L13_1742 are separated by 97 nucleotidesPfGW456L13_1742 and PfGW456L13_1743 are separated by 185 nucleotides PfGW456L13_1739 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 1,916,904 to 1,917,827 _1739 PfGW456L13_1740 - hypothetical protein, at 1,917,999 to 1,918,133 _1740 PfGW456L13_1741 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 1,918,399 to 1,920,507 _1741 PfGW456L13_1742 - Glutaredoxin-related protein, at 1,920,605 to 1,920,946 _1742 PfGW456L13_1743 - Bacterioferritin, at 1,921,132 to 1,921,608 _1743 Position (kb) 1918 1919 1920 1921Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1917.720 kb on + strand, within PfGW456L13_1739at 1917.721 kb on - strand, within PfGW456L13_1739at 1917.721 kb on - strand, within PfGW456L13_1739at 1917.721 kb on - strand, within PfGW456L13_1739at 1917.832 kb on + strandat 1917.842 kb on + strandat 1917.843 kb on - strandat 1917.843 kb on - strandat 1917.900 kb on + strandat 1917.941 kb on - strandat 1917.941 kb on - strandat 1917.943 kb on - strandat 1917.960 kb on + strandat 1917.960 kb on + strandat 1917.982 kb on - strandat 1918.000 kb on + strandat 1918.001 kb on - strandat 1918.059 kb on + strand, within PfGW456L13_1740at 1918.345 kb on + strandat 1918.346 kb on - strandat 1918.346 kb on - strandat 1918.364 kb on + strandat 1918.364 kb on + strandat 1918.365 kb on - strandat 1918.365 kb on - strandat 1918.524 kb on + strandat 1918.524 kb on + strandat 1918.525 kb on - strandat 1918.525 kb on - strandat 1918.525 kb on - strandat 1918.525 kb on - strandat 1918.525 kb on - strandat 1918.721 kb on - strand, within PfGW456L13_1741at 1918.721 kb on - strand, within PfGW456L13_1741at 1918.747 kb on + strand, within PfGW456L13_1741at 1918.748 kb on - strand, within PfGW456L13_1741at 1918.748 kb on - strand, within PfGW456L13_1741at 1918.771 kb on + strand, within PfGW456L13_1741at 1918.771 kb on + strand, within PfGW456L13_1741at 1918.771 kb on + strand, within PfGW456L13_1741at 1918.771 kb on + strand, within PfGW456L13_1741at 1918.772 kb on - strand, within PfGW456L13_1741at 1918.772 kb on - strand, within PfGW456L13_1741at 1918.772 kb on - strand, within PfGW456L13_1741at 1918.772 kb on - strand, within PfGW456L13_1741at 1918.772 kb on - strand, within PfGW456L13_1741at 1918.772 kb on - strand, within PfGW456L13_1741at 1918.858 kb on + strand, within PfGW456L13_1741at 1918.858 kb on + strand, within PfGW456L13_1741at 1918.859 kb on - strand, within PfGW456L13_1741at 1918.991 kb on + strand, within PfGW456L13_1741at 1918.991 kb on + strand, within PfGW456L13_1741at 1918.992 kb on - strand, within PfGW456L13_1741at 1919.035 kb on - strand, within PfGW456L13_1741at 1919.115 kb on + strand, within PfGW456L13_1741at 1919.115 kb on + strand, within PfGW456L13_1741at 1919.115 kb on + strand, within PfGW456L13_1741at 1919.115 kb on + strand, within PfGW456L13_1741at 1919.115 kb on + strand, within PfGW456L13_1741at 1919.116 kb on - strand, within PfGW456L13_1741at 1919.116 kb on - strand, within PfGW456L13_1741at 1919.116 kb on - strand, within PfGW456L13_1741at 1919.177 kb on + strand, within PfGW456L13_1741at 1919.294 kb on - strand, within PfGW456L13_1741at 1919.501 kb on + strand, within PfGW456L13_1741at 1919.501 kb on + strand, within PfGW456L13_1741at 1919.501 kb on + strand, within PfGW456L13_1741at 1919.501 kb on + strand, within PfGW456L13_1741at 1919.501 kb on + strand, within PfGW456L13_1741at 1919.501 kb on + strand, within PfGW456L13_1741at 1919.501 kb on + strand, within PfGW456L13_1741at 1919.501 kb on + strand, within PfGW456L13_1741at 1919.501 kb on + strand, within PfGW456L13_1741at 1919.502 kb on - strand, within PfGW456L13_1741at 1919.502 kb on - strand, within PfGW456L13_1741at 1919.502 kb on - strand, within PfGW456L13_1741at 1919.502 kb on - strand, within PfGW456L13_1741at 1919.659 kb on + strand, within PfGW456L13_1741at 1919.659 kb on + strand, within PfGW456L13_1741at 1919.660 kb on - strand, within PfGW456L13_1741at 1919.660 kb on - strand, within PfGW456L13_1741at 1919.660 kb on - strand, within PfGW456L13_1741at 1919.660 kb on - strand, within PfGW456L13_1741at 1919.660 kb on - strand, within PfGW456L13_1741at 1919.660 kb on - strand, within PfGW456L13_1741at 1919.660 kb on - strand, within PfGW456L13_1741at 1919.729 kb on - strand, within PfGW456L13_1741at 1919.729 kb on - strand, within PfGW456L13_1741at 1919.729 kb on - strand, within PfGW456L13_1741at 1919.929 kb on + strand, within PfGW456L13_1741at 1919.930 kb on - strand, within PfGW456L13_1741at 1919.930 kb on - strand, within PfGW456L13_1741at 1920.012 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.149 kb on + strand, within PfGW456L13_1741at 1920.150 kb on - strand, within PfGW456L13_1741at 1920.150 kb on - strand, within PfGW456L13_1741at 1920.150 kb on - strand, within PfGW456L13_1741at 1920.150 kb on - strand, within PfGW456L13_1741at 1920.150 kb on - strand, within PfGW456L13_1741at 1920.150 kb on - strand, within PfGW456L13_1741at 1920.150 kb on - strand, within PfGW456L13_1741at 1920.150 kb on - strand, within PfGW456L13_1741at 1920.150 kb on - strand, within PfGW456L13_1741at 1920.150 kb on - strand, within PfGW456L13_1741at 1920.174 kb on + strand, within PfGW456L13_1741at 1920.174 kb on + strand, within PfGW456L13_1741at 1920.174 kb on + strand, within PfGW456L13_1741at 1920.174 kb on + strand, within PfGW456L13_1741at 1920.174 kb on + strand, within PfGW456L13_1741at 1920.174 kb on + strand, within PfGW456L13_1741at 1920.174 kb on + strandat 1920.174 kb on + strand, within PfGW456L13_1741at 1920.174 kb on + strand, within PfGW456L13_1741at 1920.174 kb on + strand, within PfGW456L13_1741at 1920.174 kb on + strand, within PfGW456L13_1741at 1920.174 kb on + strand, within PfGW456L13_1741at 1920.174 kb on + strand, within PfGW456L13_1741at 1920.175 kb on - strand, within PfGW456L13_1741at 1920.175 kb on - strand, within PfGW456L13_1741at 1920.175 kb on - strand, within PfGW456L13_1741at 1920.175 kb on - strand, within PfGW456L13_1741at 1920.175 kb on - strand, within PfGW456L13_1741at 1920.175 kb on - strand, within PfGW456L13_1741at 1920.175 kb on - strand, within PfGW456L13_1741at 1920.175 kb on - strand, within PfGW456L13_1741at 1920.178 kb on + strand, within PfGW456L13_1741at 1920.178 kb on + strand, within PfGW456L13_1741at 1920.178 kb on + strand, within PfGW456L13_1741at 1920.178 kb on + strand, within PfGW456L13_1741at 1920.178 kb on + strand, within PfGW456L13_1741at 1920.178 kb on + strand, within PfGW456L13_1741at 1920.178 kb on + strand, within PfGW456L13_1741at 1920.178 kb on + strand, within PfGW456L13_1741at 1920.179 kb on - strand, within PfGW456L13_1741at 1920.179 kb on - strand, within PfGW456L13_1741at 1920.179 kb on - strand, within PfGW456L13_1741at 1920.179 kb on - strand, within PfGW456L13_1741at 1920.179 kb on - strand, within PfGW456L13_1741at 1920.179 kb on - strand, within PfGW456L13_1741at 1920.179 kb on - strand, within PfGW456L13_1741at 1920.179 kb on - strand, within PfGW456L13_1741at 1920.191 kb on + strand, within PfGW456L13_1741at 1920.959 kb on - strandat 1920.984 kb on + strandat 1921.053 kb on - strandat 1921.118 kb on + strandat 1921.127 kb on - strandat 1921.127 kb on - strandat 1921.134 kb on - strandat 1921.163 kb on + strandat 1921.163 kb on + strandat 1921.163 kb on + strandat 1921.163 kb on + strandat 1921.163 kb on + strandat 1921.164 kb on - strandat 1921.164 kb on - strandat 1921.164 kb on - strandat 1921.164 kb on - strandat 1921.164 kb on - strandat 1921.164 kb on - strandat 1921.164 kb on - strandat 1921.183 kb on - strand, within PfGW456L13_1743at 1921.219 kb on - strand, within PfGW456L13_1743at 1921.219 kb on - strand, within PfGW456L13_1743at 1921.243 kb on - strand, within PfGW456L13_1743

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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1,917,720 + PfGW456L13_1739 0.88 -2.0
1,917,721 - PfGW456L13_1739 0.88 -2.3
1,917,721 - PfGW456L13_1739 0.88 -3.3
1,917,721 - PfGW456L13_1739 0.88 -3.6
1,917,832 + -2.8
1,917,842 + -2.7
1,917,843 - -1.6
1,917,843 - -2.3
1,917,900 + -3.4
1,917,941 - +1.7
1,917,941 - -1.7
1,917,943 - +0.8
1,917,960 + -1.2
1,917,960 + -3.3
1,917,982 - +0.6
1,918,000 + -0.8
1,918,001 - +1.8
1,918,059 + PfGW456L13_1740 0.44 -1.1
1,918,345 + +0.9
1,918,346 - -2.6
1,918,346 - +1.7
1,918,364 + +0.2
1,918,364 + +0.4
1,918,365 - +1.1
1,918,365 - +2.2
1,918,524 + -0.7
1,918,524 + +0.3
1,918,525 - -0.6
1,918,525 - -0.4
1,918,525 - -0.5
1,918,525 - -0.2
1,918,525 - +0.1
1,918,721 - PfGW456L13_1741 0.15 -1.3
1,918,721 - PfGW456L13_1741 0.15 -0.1
1,918,747 + PfGW456L13_1741 0.17 +1.6
1,918,748 - PfGW456L13_1741 0.17 +0.4
1,918,748 - PfGW456L13_1741 0.17 +0.4
1,918,771 + PfGW456L13_1741 0.18 +0.8
1,918,771 + PfGW456L13_1741 0.18 -1.7
1,918,771 + PfGW456L13_1741 0.18 +0.4
1,918,771 + PfGW456L13_1741 0.18 -0.0
1,918,772 - PfGW456L13_1741 0.18 -0.8
1,918,772 - PfGW456L13_1741 0.18 +0.2
1,918,772 - PfGW456L13_1741 0.18 +1.6
1,918,772 - PfGW456L13_1741 0.18 +1.6
1,918,772 - PfGW456L13_1741 0.18 -0.0
1,918,772 - PfGW456L13_1741 0.18 +0.1
1,918,858 + PfGW456L13_1741 0.22 +0.2
1,918,858 + PfGW456L13_1741 0.22 -0.9
1,918,859 - PfGW456L13_1741 0.22 +0.5
1,918,991 + PfGW456L13_1741 0.28 +0.5
1,918,991 + PfGW456L13_1741 0.28 -0.5
1,918,992 - PfGW456L13_1741 0.28 -0.5
1,919,035 - PfGW456L13_1741 0.30 -1.2
1,919,115 + PfGW456L13_1741 0.34 +0.8
1,919,115 + PfGW456L13_1741 0.34 -0.2
1,919,115 + PfGW456L13_1741 0.34 -0.2
1,919,115 + PfGW456L13_1741 0.34 +2.5
1,919,115 + PfGW456L13_1741 0.34 -0.8
1,919,116 - PfGW456L13_1741 0.34 +0.9
1,919,116 - PfGW456L13_1741 0.34 -0.1
1,919,116 - PfGW456L13_1741 0.34 -1.7
1,919,177 + PfGW456L13_1741 0.37 -1.3
1,919,294 - PfGW456L13_1741 0.42 -1.4
1,919,501 + PfGW456L13_1741 0.52 -0.2
1,919,501 + PfGW456L13_1741 0.52 +0.7
1,919,501 + PfGW456L13_1741 0.52 +1.3
1,919,501 + PfGW456L13_1741 0.52 +0.5
1,919,501 + PfGW456L13_1741 0.52 -1.3
1,919,501 + PfGW456L13_1741 0.52 -0.7
1,919,501 + PfGW456L13_1741 0.52 +1.2
1,919,501 + PfGW456L13_1741 0.52 -0.7
1,919,501 + PfGW456L13_1741 0.52 -0.5
1,919,502 - PfGW456L13_1741 0.52 +0.6
1,919,502 - PfGW456L13_1741 0.52 +1.4
1,919,502 - PfGW456L13_1741 0.52 -0.5
1,919,502 - PfGW456L13_1741 0.52 -1.0
1,919,659 + PfGW456L13_1741 0.60 -1.9
1,919,659 + PfGW456L13_1741 0.60 -2.8
1,919,660 - PfGW456L13_1741 0.60 +0.5
1,919,660 - PfGW456L13_1741 0.60 -0.3
1,919,660 - PfGW456L13_1741 0.60 -2.3
1,919,660 - PfGW456L13_1741 0.60 +0.6
1,919,660 - PfGW456L13_1741 0.60 +0.3
1,919,660 - PfGW456L13_1741 0.60 +1.0
1,919,660 - PfGW456L13_1741 0.60 -0.9
1,919,729 - PfGW456L13_1741 0.63 -1.4
1,919,729 - PfGW456L13_1741 0.63 +0.9
1,919,729 - PfGW456L13_1741 0.63 +0.2
1,919,929 + PfGW456L13_1741 0.73 +1.8
1,919,930 - PfGW456L13_1741 0.73 +0.1
1,919,930 - PfGW456L13_1741 0.73 -1.7
1,920,012 + PfGW456L13_1741 0.76 -2.2
1,920,149 + PfGW456L13_1741 0.83 +0.0
1,920,149 + PfGW456L13_1741 0.83 +0.5
1,920,149 + PfGW456L13_1741 0.83 -0.9
1,920,149 + PfGW456L13_1741 0.83 +0.0
1,920,149 + PfGW456L13_1741 0.83 +0.8
1,920,149 + PfGW456L13_1741 0.83 -0.6
1,920,149 + PfGW456L13_1741 0.83 -0.3
1,920,149 + PfGW456L13_1741 0.83 -2.2
1,920,149 + PfGW456L13_1741 0.83 -0.9
1,920,149 + PfGW456L13_1741 0.83 +1.5
1,920,149 + PfGW456L13_1741 0.83 +0.0
1,920,149 + PfGW456L13_1741 0.83 +1.0
1,920,149 + PfGW456L13_1741 0.83 +0.6
1,920,149 + PfGW456L13_1741 0.83 +1.2
1,920,149 + PfGW456L13_1741 0.83 -0.3
1,920,150 - PfGW456L13_1741 0.83 -0.9
1,920,150 - PfGW456L13_1741 0.83 +0.3
1,920,150 - PfGW456L13_1741 0.83 -0.1
1,920,150 - PfGW456L13_1741 0.83 -0.3
1,920,150 - PfGW456L13_1741 0.83 +0.7
1,920,150 - PfGW456L13_1741 0.83 -1.1
1,920,150 - PfGW456L13_1741 0.83 +1.2
1,920,150 - PfGW456L13_1741 0.83 +0.0
1,920,150 - PfGW456L13_1741 0.83 +1.1
1,920,150 - PfGW456L13_1741 0.83 +0.9
1,920,174 + PfGW456L13_1741 0.84 +0.1
1,920,174 + PfGW456L13_1741 0.84 +0.1
1,920,174 + PfGW456L13_1741 0.84 -1.0
1,920,174 + PfGW456L13_1741 0.84 -2.9
1,920,174 + PfGW456L13_1741 0.84 -1.1
1,920,174 + PfGW456L13_1741 0.84 -0.8
1,920,174 + +0.8
1,920,174 + PfGW456L13_1741 0.84 +0.1
1,920,174 + PfGW456L13_1741 0.84 +0.4
1,920,174 + PfGW456L13_1741 0.84 -0.7
1,920,174 + PfGW456L13_1741 0.84 -0.1
1,920,174 + PfGW456L13_1741 0.84 -0.4
1,920,174 + PfGW456L13_1741 0.84 +0.6
1,920,175 - PfGW456L13_1741 0.84 -2.8
1,920,175 - PfGW456L13_1741 0.84 -1.4
1,920,175 - PfGW456L13_1741 0.84 +0.7
1,920,175 - PfGW456L13_1741 0.84 +0.4
1,920,175 - PfGW456L13_1741 0.84 +0.3
1,920,175 - PfGW456L13_1741 0.84 +1.6
1,920,175 - PfGW456L13_1741 0.84 +0.4
1,920,175 - PfGW456L13_1741 0.84 +1.9
1,920,178 + PfGW456L13_1741 0.84 +1.0
1,920,178 + PfGW456L13_1741 0.84 -1.2
1,920,178 + PfGW456L13_1741 0.84 +0.6
1,920,178 + PfGW456L13_1741 0.84 +0.3
1,920,178 + PfGW456L13_1741 0.84 +0.2
1,920,178 + PfGW456L13_1741 0.84 +0.2
1,920,178 + PfGW456L13_1741 0.84 -1.3
1,920,178 + PfGW456L13_1741 0.84 -2.3
1,920,179 - PfGW456L13_1741 0.84 +1.4
1,920,179 - PfGW456L13_1741 0.84 -0.8
1,920,179 - PfGW456L13_1741 0.84 +1.3
1,920,179 - PfGW456L13_1741 0.84 +0.5
1,920,179 - PfGW456L13_1741 0.84 +0.7
1,920,179 - PfGW456L13_1741 0.84 +1.3
1,920,179 - PfGW456L13_1741 0.84 +0.2
1,920,179 - PfGW456L13_1741 0.84 -2.6
1,920,191 + PfGW456L13_1741 0.85 -0.2
1,920,959 - +0.8
1,920,984 + -3.4
1,921,053 - +1.4
1,921,118 + +0.2
1,921,127 - +0.4
1,921,127 - -3.5
1,921,134 - -1.0
1,921,163 + +0.6
1,921,163 + +0.1
1,921,163 + -0.3
1,921,163 + +1.6
1,921,163 + -2.6
1,921,164 - +0.2
1,921,164 - +0.4
1,921,164 - -0.1
1,921,164 - -0.1
1,921,164 - -0.1
1,921,164 - +0.4
1,921,164 - +1.8
1,921,183 - PfGW456L13_1743 0.11 +0.0
1,921,219 - PfGW456L13_1743 0.18 -0.9
1,921,219 - PfGW456L13_1743 0.18 -1.5
1,921,243 - PfGW456L13_1743 0.23 +0.1

Or see this region's nucleotide sequence