Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01760 and PS417_01765 are separated by 12 nucleotides PS417_01765 and PS417_01770 are separated by 129 nucleotides
PS417_01760: PS417_01760 - imidazolonepropionase, at 391,604 to 392,809
_01760
PS417_01765: PS417_01765 - N-formylglutamate amidohydrolase, at 392,822 to 393,622
_01765
PS417_01770: PS417_01770 - glycine/betaine ABC transporter substrate-binding protein, at 393,752 to 394,687
_01770
Position (kb) 392
393
394 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 391.866 kb on - strand, within PS417_01760 at 391.998 kb on + strand at 392.098 kb on + strand, within PS417_01760 at 392.098 kb on + strand, within PS417_01760 at 392.153 kb on + strand, within PS417_01760 at 392.460 kb on - strand, within PS417_01760 at 392.747 kb on + strand at 392.817 kb on + strand at 392.817 kb on + strand at 392.817 kb on + strand at 392.818 kb on - strand at 392.818 kb on - strand at 392.818 kb on - strand at 392.818 kb on - strand at 393.687 kb on - strand at 393.721 kb on + strand at 393.722 kb on - strand at 393.726 kb on + strand at 393.726 kb on + strand at 393.982 kb on + strand, within PS417_01770 at 394.109 kb on + strand, within PS417_01770 at 394.181 kb on + strand, within PS417_01770 at 394.181 kb on + strand, within PS417_01770 at 394.407 kb on + strand, within PS417_01770 at 394.407 kb on + strand, within PS417_01770 at 394.408 kb on - strand, within PS417_01770
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 391,866 - PS417_01760 0.22 -0.1 391,998 + -0.3 392,098 + PS417_01760 0.41 -1.5 392,098 + PS417_01760 0.41 -2.6 392,153 + PS417_01760 0.46 -3.8 392,460 - PS417_01760 0.71 -2.0 392,747 + -3.9 392,817 + -3.0 392,817 + -2.6 392,817 + -0.5 392,818 - -0.3 392,818 - -2.6 392,818 - -0.3 392,818 - -3.8 393,687 - -0.0 393,721 + +0.3 393,722 - -0.2 393,726 + -0.1 393,726 + -0.2 393,982 + PS417_01770 0.25 -0.5 394,109 + PS417_01770 0.38 -0.1 394,181 + PS417_01770 0.46 -0.5 394,181 + PS417_01770 0.46 -0.3 394,407 + PS417_01770 0.70 -1.3 394,407 + PS417_01770 0.70 +0.0 394,408 - PS417_01770 0.70 +0.1
Or see this region's nucleotide sequence