Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4346 and Echvi_4347 are separated by 170 nucleotides Echvi_4347 and Echvi_4348 are separated by 87 nucleotides
Echvi_4346: Echvi_4346 - Signal transduction histidine kinase, at 5,200,684 to 5,204,886
_4346
Echvi_4347: Echvi_4347 - DNA repair proteins, at 5,205,057 to 5,205,245
_4347
Echvi_4348: Echvi_4348 - Site-specific recombinase XerD, at 5,205,333 to 5,206,346
_4348
Position (kb) 5205
5206 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5204.066 kb on + strand, within Echvi_4346 at 5204.067 kb on - strand, within Echvi_4346 at 5204.070 kb on + strand, within Echvi_4346 at 5204.070 kb on + strand, within Echvi_4346 at 5204.070 kb on + strand, within Echvi_4346 at 5204.070 kb on + strand, within Echvi_4346 at 5204.070 kb on + strand, within Echvi_4346 at 5204.070 kb on + strand, within Echvi_4346 at 5204.071 kb on - strand, within Echvi_4346 at 5204.071 kb on - strand, within Echvi_4346 at 5204.071 kb on - strand, within Echvi_4346 at 5204.071 kb on - strand, within Echvi_4346 at 5204.103 kb on + strand, within Echvi_4346 at 5204.104 kb on - strand, within Echvi_4346 at 5204.104 kb on - strand, within Echvi_4346 at 5204.112 kb on - strand, within Echvi_4346 at 5204.138 kb on + strand, within Echvi_4346 at 5204.138 kb on + strand, within Echvi_4346 at 5204.138 kb on + strand, within Echvi_4346 at 5204.139 kb on - strand, within Echvi_4346 at 5204.139 kb on - strand, within Echvi_4346 at 5204.175 kb on + strand, within Echvi_4346 at 5204.175 kb on + strand, within Echvi_4346 at 5204.210 kb on + strand, within Echvi_4346 at 5204.211 kb on - strand, within Echvi_4346 at 5204.211 kb on - strand, within Echvi_4346 at 5204.268 kb on + strand, within Echvi_4346 at 5204.271 kb on + strand, within Echvi_4346 at 5204.271 kb on + strand, within Echvi_4346 at 5204.272 kb on - strand, within Echvi_4346 at 5204.273 kb on + strand, within Echvi_4346 at 5204.282 kb on + strand, within Echvi_4346 at 5204.283 kb on - strand, within Echvi_4346 at 5204.312 kb on + strand, within Echvi_4346 at 5204.316 kb on + strand, within Echvi_4346 at 5204.316 kb on + strand, within Echvi_4346 at 5204.317 kb on - strand, within Echvi_4346 at 5204.317 kb on - strand, within Echvi_4346 at 5204.349 kb on + strand, within Echvi_4346 at 5204.405 kb on - strand, within Echvi_4346 at 5204.544 kb on - strand at 5204.544 kb on - strand at 5204.628 kb on + strand at 5204.629 kb on - strand at 5204.629 kb on - strand at 5204.669 kb on + strand at 5204.701 kb on - strand at 5204.701 kb on - strand at 5204.701 kb on - strand at 5204.733 kb on - strand at 5204.769 kb on + strand at 5204.770 kb on - strand at 5204.788 kb on + strand at 5204.788 kb on + strand at 5204.789 kb on - strand at 5204.790 kb on + strand at 5204.790 kb on + strand at 5204.791 kb on - strand at 5204.791 kb on - strand at 5204.815 kb on + strand at 5204.843 kb on + strand at 5204.864 kb on - strand at 5204.891 kb on + strand at 5204.892 kb on - strand at 5204.899 kb on - strand at 5205.016 kb on - strand at 5205.016 kb on - strand at 5205.020 kb on - strand at 5205.020 kb on - strand at 5205.025 kb on - strand at 5205.088 kb on + strand, within Echvi_4347 at 5205.106 kb on - strand, within Echvi_4347 at 5205.110 kb on + strand, within Echvi_4347 at 5205.226 kb on - strand, within Echvi_4347 at 5205.238 kb on - strand at 5205.248 kb on - strand at 5205.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 5,204,066 + Echvi_4346 0.80 -1.1 5,204,067 - Echvi_4346 0.80 +0.7 5,204,070 + Echvi_4346 0.81 +2.3 5,204,070 + Echvi_4346 0.81 -0.6 5,204,070 + Echvi_4346 0.81 +1.7 5,204,070 + Echvi_4346 0.81 -2.2 5,204,070 + Echvi_4346 0.81 -0.4 5,204,070 + Echvi_4346 0.81 -0.7 5,204,071 - Echvi_4346 0.81 +2.1 5,204,071 - Echvi_4346 0.81 +0.6 5,204,071 - Echvi_4346 0.81 -1.5 5,204,071 - Echvi_4346 0.81 -1.8 5,204,103 + Echvi_4346 0.81 +0.2 5,204,104 - Echvi_4346 0.81 -0.2 5,204,104 - Echvi_4346 0.81 -0.1 5,204,112 - Echvi_4346 0.82 +0.3 5,204,138 + Echvi_4346 0.82 +0.2 5,204,138 + Echvi_4346 0.82 -0.3 5,204,138 + Echvi_4346 0.82 -0.4 5,204,139 - Echvi_4346 0.82 +0.6 5,204,139 - Echvi_4346 0.82 -0.6 5,204,175 + Echvi_4346 0.83 +0.9 5,204,175 + Echvi_4346 0.83 +0.5 5,204,210 + Echvi_4346 0.84 -2.4 5,204,211 - Echvi_4346 0.84 -0.6 5,204,211 - Echvi_4346 0.84 +0.4 5,204,268 + Echvi_4346 0.85 -0.7 5,204,271 + Echvi_4346 0.85 -0.4 5,204,271 + Echvi_4346 0.85 -0.2 5,204,272 - Echvi_4346 0.85 +0.7 5,204,273 + Echvi_4346 0.85 -0.9 5,204,282 + Echvi_4346 0.86 -1.6 5,204,283 - Echvi_4346 0.86 -1.1 5,204,312 + Echvi_4346 0.86 -0.3 5,204,316 + Echvi_4346 0.86 +0.1 5,204,316 + Echvi_4346 0.86 +0.0 5,204,317 - Echvi_4346 0.86 -0.1 5,204,317 - Echvi_4346 0.86 -1.1 5,204,349 + Echvi_4346 0.87 -0.1 5,204,405 - Echvi_4346 0.89 +0.1 5,204,544 - +0.1 5,204,544 - -0.4 5,204,628 + -1.3 5,204,629 - +0.1 5,204,629 - +0.4 5,204,669 + +0.3 5,204,701 - -0.5 5,204,701 - -0.3 5,204,701 - -0.2 5,204,733 - -1.3 5,204,769 + -0.8 5,204,770 - -0.4 5,204,788 + +0.8 5,204,788 + -0.3 5,204,789 - +0.5 5,204,790 + +2.0 5,204,790 + -0.3 5,204,791 - +0.1 5,204,791 - +0.2 5,204,815 + +3.7 5,204,843 + -1.0 5,204,864 - +0.3 5,204,891 + -0.3 5,204,892 - -0.1 5,204,899 - -0.6 5,205,016 - -1.4 5,205,016 - -0.2 5,205,020 - -0.2 5,205,020 - -2.0 5,205,025 - +0.4 5,205,088 + Echvi_4347 0.16 -1.8 5,205,106 - Echvi_4347 0.26 -0.2 5,205,110 + Echvi_4347 0.28 -0.1 5,205,226 - Echvi_4347 0.89 -1.8 5,205,238 - +0.2 5,205,248 - -0.0 5,205,248 - -0.1
Or see this region's nucleotide sequence