Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1831

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1830 and Echvi_1831 are separated by 150 nucleotidesEchvi_1831 and Echvi_1832 are separated by 52 nucleotides Echvi_1830: Echvi_1830 - hypothetical protein, at 2,145,921 to 2,146,910 _1830 Echvi_1831: Echvi_1831 - Fe2+/Zn2+ uptake regulation proteins, at 2,147,061 to 2,147,474 _1831 Echvi_1832: Echvi_1832 - Peroxiredoxin, at 2,147,527 to 2,148,156 _1832 Position (kb) 2147 2148Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2146.068 kb on + strand, within Echvi_1830at 2146.068 kb on + strand, within Echvi_1830at 2146.099 kb on + strand, within Echvi_1830at 2146.100 kb on - strand, within Echvi_1830at 2146.112 kb on + strand, within Echvi_1830at 2146.113 kb on - strand, within Echvi_1830at 2146.113 kb on - strand, within Echvi_1830at 2146.136 kb on + strand, within Echvi_1830at 2146.136 kb on + strand, within Echvi_1830at 2146.137 kb on - strand, within Echvi_1830at 2146.153 kb on + strand, within Echvi_1830at 2146.154 kb on - strand, within Echvi_1830at 2146.237 kb on - strand, within Echvi_1830at 2146.248 kb on - strand, within Echvi_1830at 2146.249 kb on + strand, within Echvi_1830at 2146.250 kb on - strand, within Echvi_1830at 2146.250 kb on - strand, within Echvi_1830at 2146.263 kb on + strand, within Echvi_1830at 2146.263 kb on + strand, within Echvi_1830at 2146.263 kb on + strand, within Echvi_1830at 2146.263 kb on + strand, within Echvi_1830at 2146.271 kb on + strand, within Echvi_1830at 2146.271 kb on + strand, within Echvi_1830at 2146.272 kb on - strand, within Echvi_1830at 2146.274 kb on - strand, within Echvi_1830at 2146.274 kb on - strand, within Echvi_1830at 2146.274 kb on - strand, within Echvi_1830at 2146.303 kb on - strand, within Echvi_1830at 2146.303 kb on - strand, within Echvi_1830at 2146.303 kb on - strand, within Echvi_1830at 2146.345 kb on - strand, within Echvi_1830at 2146.345 kb on - strand, within Echvi_1830at 2146.365 kb on + strand, within Echvi_1830at 2146.397 kb on + strand, within Echvi_1830at 2146.434 kb on + strand, within Echvi_1830at 2146.435 kb on - strand, within Echvi_1830at 2146.465 kb on + strand, within Echvi_1830at 2146.465 kb on + strand, within Echvi_1830at 2146.465 kb on + strand, within Echvi_1830at 2146.465 kb on + strand, within Echvi_1830at 2146.465 kb on + strand, within Echvi_1830at 2146.465 kb on + strand, within Echvi_1830at 2146.465 kb on + strand, within Echvi_1830at 2146.528 kb on + strand, within Echvi_1830at 2146.528 kb on + strand, within Echvi_1830at 2146.528 kb on + strand, within Echvi_1830at 2146.528 kb on + strand, within Echvi_1830at 2146.529 kb on - strand, within Echvi_1830at 2146.529 kb on - strand, within Echvi_1830at 2146.530 kb on + strand, within Echvi_1830at 2146.531 kb on - strand, within Echvi_1830at 2146.539 kb on + strand, within Echvi_1830at 2146.540 kb on - strand, within Echvi_1830at 2146.565 kb on - strand, within Echvi_1830at 2146.566 kb on + strand, within Echvi_1830at 2146.567 kb on - strand, within Echvi_1830at 2146.619 kb on - strand, within Echvi_1830at 2146.631 kb on + strand, within Echvi_1830at 2146.660 kb on - strand, within Echvi_1830at 2146.701 kb on + strand, within Echvi_1830at 2146.702 kb on - strand, within Echvi_1830at 2146.745 kb on + strand, within Echvi_1830at 2146.746 kb on - strand, within Echvi_1830at 2146.746 kb on - strand, within Echvi_1830at 2146.746 kb on - strand, within Echvi_1830at 2146.748 kb on - strand, within Echvi_1830at 2146.751 kb on - strand, within Echvi_1830at 2146.773 kb on + strand, within Echvi_1830at 2146.777 kb on + strand, within Echvi_1830at 2146.777 kb on + strand, within Echvi_1830at 2146.777 kb on + strand, within Echvi_1830at 2146.777 kb on + strand, within Echvi_1830at 2146.778 kb on - strand, within Echvi_1830at 2146.780 kb on + strand, within Echvi_1830at 2146.789 kb on + strand, within Echvi_1830at 2146.789 kb on + strand, within Echvi_1830at 2146.790 kb on - strand, within Echvi_1830at 2146.808 kb on + strand, within Echvi_1830at 2146.832 kb on + strandat 2146.837 kb on - strandat 2146.837 kb on - strandat 2146.940 kb on - strandat 2147.007 kb on - strandat 2147.112 kb on - strand, within Echvi_1831at 2147.181 kb on + strand, within Echvi_1831at 2147.182 kb on - strand, within Echvi_1831at 2147.211 kb on - strand, within Echvi_1831at 2147.230 kb on - strand, within Echvi_1831at 2147.230 kb on - strand, within Echvi_1831at 2147.243 kb on + strand, within Echvi_1831at 2147.261 kb on + strand, within Echvi_1831at 2147.262 kb on - strand, within Echvi_1831at 2147.262 kb on - strand, within Echvi_1831at 2147.262 kb on - strand, within Echvi_1831at 2147.324 kb on + strand, within Echvi_1831at 2147.444 kb on - strandat 2147.444 kb on - strandat 2147.444 kb on - strandat 2147.444 kb on - strandat 2147.500 kb on + strandat 2147.500 kb on + strandat 2147.500 kb on + strandat 2147.501 kb on - strandat 2147.505 kb on - strandat 2147.512 kb on + strandat 2147.513 kb on - strandat 2147.534 kb on + strandat 2147.534 kb on + strandat 2147.534 kb on + strandat 2147.534 kb on + strandat 2147.535 kb on - strandat 2147.535 kb on - strandat 2147.556 kb on - strandat 2147.598 kb on + strand, within Echvi_1832at 2147.599 kb on - strand, within Echvi_1832at 2147.644 kb on + strand, within Echvi_1832at 2147.644 kb on + strand, within Echvi_1832at 2147.645 kb on - strand, within Echvi_1832at 2147.794 kb on - strand, within Echvi_1832at 2147.824 kb on + strand, within Echvi_1832at 2147.862 kb on + strand, within Echvi_1832at 2147.893 kb on + strand, within Echvi_1832at 2147.893 kb on + strand, within Echvi_1832at 2147.917 kb on + strand, within Echvi_1832at 2148.039 kb on - strand, within Echvi_1832at 2148.099 kb on + strandat 2148.132 kb on - strandat 2148.132 kb on - strandat 2148.140 kb on - strandat 2148.143 kb on + strandat 2148.144 kb on - strandat 2148.147 kb on + strandat 2148.148 kb on - strandat 2148.178 kb on - strandat 2148.182 kb on + strandat 2148.231 kb on + strandat 2148.232 kb on - strandat 2148.232 kb on - strandat 2148.235 kb on - strandat 2148.253 kb on + strandat 2148.280 kb on + strandat 2148.470 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,146,068 + Echvi_1830 0.15 +0.5
2,146,068 + Echvi_1830 0.15 -0.9
2,146,099 + Echvi_1830 0.18 +1.8
2,146,100 - Echvi_1830 0.18 +3.8
2,146,112 + Echvi_1830 0.19 +1.5
2,146,113 - Echvi_1830 0.19 +0.8
2,146,113 - Echvi_1830 0.19 +2.1
2,146,136 + Echvi_1830 0.22 -0.4
2,146,136 + Echvi_1830 0.22 -2.1
2,146,137 - Echvi_1830 0.22 -0.6
2,146,153 + Echvi_1830 0.23 +0.4
2,146,154 - Echvi_1830 0.24 -0.6
2,146,237 - Echvi_1830 0.32 +0.0
2,146,248 - Echvi_1830 0.33 -0.7
2,146,249 + Echvi_1830 0.33 -0.0
2,146,250 - Echvi_1830 0.33 +1.4
2,146,250 - Echvi_1830 0.33 +2.8
2,146,263 + Echvi_1830 0.35 -0.2
2,146,263 + Echvi_1830 0.35 +1.2
2,146,263 + Echvi_1830 0.35 -1.3
2,146,263 + Echvi_1830 0.35 +0.6
2,146,271 + Echvi_1830 0.35 +1.6
2,146,271 + Echvi_1830 0.35 -0.2
2,146,272 - Echvi_1830 0.35 -1.8
2,146,274 - Echvi_1830 0.36 -1.0
2,146,274 - Echvi_1830 0.36 +0.2
2,146,274 - Echvi_1830 0.36 -0.2
2,146,303 - Echvi_1830 0.39 +0.7
2,146,303 - Echvi_1830 0.39 -0.6
2,146,303 - Echvi_1830 0.39 -0.0
2,146,345 - Echvi_1830 0.43 +0.8
2,146,345 - Echvi_1830 0.43 -1.0
2,146,365 + Echvi_1830 0.45 +0.2
2,146,397 + Echvi_1830 0.48 +0.5
2,146,434 + Echvi_1830 0.52 +0.2
2,146,435 - Echvi_1830 0.52 +0.7
2,146,465 + Echvi_1830 0.55 +1.5
2,146,465 + Echvi_1830 0.55 +0.1
2,146,465 + Echvi_1830 0.55 -1.7
2,146,465 + Echvi_1830 0.55 +1.2
2,146,465 + Echvi_1830 0.55 +0.6
2,146,465 + Echvi_1830 0.55 +0.4
2,146,465 + Echvi_1830 0.55 -0.1
2,146,528 + Echvi_1830 0.61 -0.2
2,146,528 + Echvi_1830 0.61 -1.3
2,146,528 + Echvi_1830 0.61 -0.2
2,146,528 + Echvi_1830 0.61 -0.3
2,146,529 - Echvi_1830 0.61 -0.6
2,146,529 - Echvi_1830 0.61 +0.1
2,146,530 + Echvi_1830 0.62 +0.2
2,146,531 - Echvi_1830 0.62 -1.2
2,146,539 + Echvi_1830 0.62 -0.4
2,146,540 - Echvi_1830 0.63 +0.2
2,146,565 - Echvi_1830 0.65 +2.9
2,146,566 + Echvi_1830 0.65 +1.0
2,146,567 - Echvi_1830 0.65 +1.5
2,146,619 - Echvi_1830 0.71 -1.0
2,146,631 + Echvi_1830 0.72 -0.8
2,146,660 - Echvi_1830 0.75 +0.4
2,146,701 + Echvi_1830 0.79 -0.0
2,146,702 - Echvi_1830 0.79 -0.0
2,146,745 + Echvi_1830 0.83 +0.5
2,146,746 - Echvi_1830 0.83 +2.2
2,146,746 - Echvi_1830 0.83 +1.5
2,146,746 - Echvi_1830 0.83 -0.8
2,146,748 - Echvi_1830 0.84 +0.2
2,146,751 - Echvi_1830 0.84 -0.4
2,146,773 + Echvi_1830 0.86 +0.1
2,146,777 + Echvi_1830 0.86 +0.7
2,146,777 + Echvi_1830 0.86 -0.3
2,146,777 + Echvi_1830 0.86 -0.8
2,146,777 + Echvi_1830 0.86 -0.0
2,146,778 - Echvi_1830 0.87 +1.8
2,146,780 + Echvi_1830 0.87 +0.6
2,146,789 + Echvi_1830 0.88 -0.0
2,146,789 + Echvi_1830 0.88 +0.7
2,146,790 - Echvi_1830 0.88 +0.3
2,146,808 + Echvi_1830 0.90 +1.0
2,146,832 + -1.2
2,146,837 - +1.2
2,146,837 - -0.0
2,146,940 - -0.3
2,147,007 - +0.4
2,147,112 - Echvi_1831 0.12 -0.3
2,147,181 + Echvi_1831 0.29 -0.8
2,147,182 - Echvi_1831 0.29 -1.7
2,147,211 - Echvi_1831 0.36 -0.9
2,147,230 - Echvi_1831 0.41 -1.3
2,147,230 - Echvi_1831 0.41 +2.1
2,147,243 + Echvi_1831 0.44 -1.5
2,147,261 + Echvi_1831 0.48 -0.6
2,147,262 - Echvi_1831 0.49 -0.7
2,147,262 - Echvi_1831 0.49 -1.4
2,147,262 - Echvi_1831 0.49 -1.9
2,147,324 + Echvi_1831 0.64 +0.0
2,147,444 - +0.5
2,147,444 - -1.4
2,147,444 - -0.5
2,147,444 - +1.2
2,147,500 + -1.2
2,147,500 + -0.6
2,147,500 + -0.7
2,147,501 - -0.8
2,147,505 - -1.1
2,147,512 + -2.5
2,147,513 - +0.2
2,147,534 + +1.5
2,147,534 + +0.2
2,147,534 + -1.0
2,147,534 + -0.4
2,147,535 - -0.2
2,147,535 - -0.2
2,147,556 - -1.0
2,147,598 + Echvi_1832 0.11 -1.6
2,147,599 - Echvi_1832 0.11 -1.2
2,147,644 + Echvi_1832 0.19 -0.6
2,147,644 + Echvi_1832 0.19 -1.2
2,147,645 - Echvi_1832 0.19 -0.2
2,147,794 - Echvi_1832 0.42 +1.1
2,147,824 + Echvi_1832 0.47 +0.8
2,147,862 + Echvi_1832 0.53 +0.2
2,147,893 + Echvi_1832 0.58 +0.2
2,147,893 + Echvi_1832 0.58 -0.6
2,147,917 + Echvi_1832 0.62 -1.1
2,148,039 - Echvi_1832 0.81 +1.0
2,148,099 + -0.5
2,148,132 - -0.6
2,148,132 - -0.8
2,148,140 - -1.1
2,148,143 + +0.9
2,148,144 - +3.8
2,148,147 + +1.8
2,148,148 - -0.1
2,148,178 - -0.5
2,148,182 + -0.2
2,148,231 + -1.2
2,148,232 - -0.2
2,148,232 - +0.0
2,148,235 - +1.1
2,148,253 + +0.7
2,148,280 + +0.8
2,148,470 - -0.1

Or see this region's nucleotide sequence