Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0562

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0561 and Echvi_0562 are separated by 28 nucleotidesEchvi_0562 and Echvi_0563 are separated by 184 nucleotidesEchvi_0563 and Echvi_0564 are separated by 207 nucleotides Echvi_0561: Echvi_0561 - Sugar kinases, ribokinase family, at 634,858 to 635,865 _0561 Echvi_0562: Echvi_0562 - hypothetical protein, at 635,894 to 637,057 _0562 Echvi_0563: Echvi_0563 - hypothetical protein, at 637,242 to 637,490 _0563 Echvi_0564: Echvi_0564 - ribosomal protein S12 methylthiotransferase RimO, at 637,698 to 639,011 _0564 Position (kb) 635 636 637 638Strain fitness (log2 ratio) -2 -1 0 1 2 3at 634.995 kb on + strand, within Echvi_0561at 635.073 kb on + strand, within Echvi_0561at 635.265 kb on + strandat 635.275 kb on + strand, within Echvi_0561at 635.275 kb on + strand, within Echvi_0561at 635.276 kb on - strandat 635.389 kb on + strand, within Echvi_0561at 635.389 kb on + strand, within Echvi_0561at 635.389 kb on + strand, within Echvi_0561at 635.391 kb on + strand, within Echvi_0561at 635.393 kb on + strand, within Echvi_0561at 635.400 kb on - strand, within Echvi_0561at 635.521 kb on - strand, within Echvi_0561at 635.524 kb on - strand, within Echvi_0561at 635.627 kb on + strand, within Echvi_0561at 635.630 kb on + strand, within Echvi_0561at 635.903 kb on + strandat 635.908 kb on + strandat 637.049 kb on + strandat 637.108 kb on + strandat 637.109 kb on - strandat 637.128 kb on + strandat 637.129 kb on - strandat 637.129 kb on - strandat 637.129 kb on - strandat 637.188 kb on + strandat 637.188 kb on + strandat 637.189 kb on - strandat 637.211 kb on + strandat 637.211 kb on + strandat 637.258 kb on - strandat 637.317 kb on + strand, within Echvi_0563at 637.353 kb on - strand, within Echvi_0563at 637.364 kb on - strand, within Echvi_0563at 637.376 kb on - strand, within Echvi_0563at 637.388 kb on + strand, within Echvi_0563at 637.401 kb on - strand, within Echvi_0563at 637.401 kb on - strand, within Echvi_0563at 637.402 kb on + strand, within Echvi_0563at 637.402 kb on + strand, within Echvi_0563at 637.412 kb on + strand, within Echvi_0563at 637.412 kb on + strand, within Echvi_0563at 637.412 kb on + strand, within Echvi_0563at 637.412 kb on + strand, within Echvi_0563at 637.413 kb on - strand, within Echvi_0563at 637.414 kb on + strand, within Echvi_0563at 637.425 kb on - strand, within Echvi_0563at 637.425 kb on - strand, within Echvi_0563at 637.440 kb on - strand, within Echvi_0563at 637.457 kb on + strand, within Echvi_0563at 637.458 kb on - strand, within Echvi_0563at 637.508 kb on + strandat 637.513 kb on + strandat 637.513 kb on + strandat 637.525 kb on + strandat 637.560 kb on - strandat 637.593 kb on - strandat 637.593 kb on - strandat 637.602 kb on - strandat 637.819 kb on - strandat 637.849 kb on + strand, within Echvi_0564at 637.850 kb on - strand, within Echvi_0564at 637.850 kb on - strand, within Echvi_0564at 637.850 kb on - strand, within Echvi_0564at 637.907 kb on + strand, within Echvi_0564at 637.995 kb on - strand, within Echvi_0564at 637.995 kb on - strand, within Echvi_0564at 637.995 kb on - strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.006 kb on + strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.007 kb on - strand, within Echvi_0564at 638.023 kb on + strand, within Echvi_0564at 638.027 kb on + strand, within Echvi_0564at 638.027 kb on + strand, within Echvi_0564at 638.028 kb on - strand, within Echvi_0564at 638.028 kb on - strand, within Echvi_0564

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
634,995 + Echvi_0561 0.14 +0.6
635,073 + Echvi_0561 0.21 +0.4
635,265 + +0.8
635,275 + Echvi_0561 0.41 +0.4
635,275 + Echvi_0561 0.41 -1.5
635,276 - +1.8
635,389 + Echvi_0561 0.53 +0.2
635,389 + Echvi_0561 0.53 -1.9
635,389 + Echvi_0561 0.53 -1.4
635,391 + Echvi_0561 0.53 +0.1
635,393 + Echvi_0561 0.53 -0.4
635,400 - Echvi_0561 0.54 -0.0
635,521 - Echvi_0561 0.66 +0.2
635,524 - Echvi_0561 0.66 +0.2
635,627 + Echvi_0561 0.76 -1.7
635,630 + Echvi_0561 0.77 -0.1
635,903 + -1.3
635,908 + +0.1
637,049 + +1.0
637,108 + -0.1
637,109 - -0.0
637,128 + -0.5
637,129 - +0.3
637,129 - +0.6
637,129 - +0.0
637,188 + -0.1
637,188 + -0.0
637,189 - -2.0
637,211 + +1.0
637,211 + -0.5
637,258 - +0.1
637,317 + Echvi_0563 0.30 +0.9
637,353 - Echvi_0563 0.45 -0.5
637,364 - Echvi_0563 0.49 -0.6
637,376 - Echvi_0563 0.54 +2.2
637,388 + Echvi_0563 0.59 -0.6
637,401 - Echvi_0563 0.64 -0.4
637,401 - Echvi_0563 0.64 -0.4
637,402 + Echvi_0563 0.64 +0.2
637,402 + Echvi_0563 0.64 +0.0
637,412 + Echvi_0563 0.68 -1.2
637,412 + Echvi_0563 0.68 -0.1
637,412 + Echvi_0563 0.68 -0.2
637,412 + Echvi_0563 0.68 -0.1
637,413 - Echvi_0563 0.69 +1.8
637,414 + Echvi_0563 0.69 -0.7
637,425 - Echvi_0563 0.73 -0.9
637,425 - Echvi_0563 0.73 +1.2
637,440 - Echvi_0563 0.80 -0.2
637,457 + Echvi_0563 0.86 -1.5
637,458 - Echvi_0563 0.87 -2.3
637,508 + -0.0
637,513 + -0.7
637,513 + +0.2
637,525 + +0.2
637,560 - -1.1
637,593 - +3.6
637,593 - +0.7
637,602 - -2.1
637,819 - +0.7
637,849 + Echvi_0564 0.11 +0.2
637,850 - Echvi_0564 0.12 -0.5
637,850 - Echvi_0564 0.12 -0.0
637,850 - Echvi_0564 0.12 +0.0
637,907 + Echvi_0564 0.16 +0.4
637,995 - Echvi_0564 0.23 -0.6
637,995 - Echvi_0564 0.23 -0.7
637,995 - Echvi_0564 0.23 -1.3
638,006 + Echvi_0564 0.23 +1.0
638,006 + Echvi_0564 0.23 +2.2
638,006 + Echvi_0564 0.23 -0.1
638,006 + Echvi_0564 0.23 +0.1
638,006 + Echvi_0564 0.23 +0.2
638,007 - Echvi_0564 0.24 +0.8
638,007 - Echvi_0564 0.24 +1.2
638,007 - Echvi_0564 0.24 -0.1
638,007 - Echvi_0564 0.24 +0.1
638,007 - Echvi_0564 0.24 -1.4
638,023 + Echvi_0564 0.25 +0.4
638,027 + Echvi_0564 0.25 +0.5
638,027 + Echvi_0564 0.25 -0.1
638,028 - Echvi_0564 0.25 -0.2
638,028 - Echvi_0564 0.25 +0.7

Or see this region's nucleotide sequence