Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0471 and Echvi_0472 are separated by 331 nucleotides Echvi_0472 and Echvi_0473 are separated by 34 nucleotides Echvi_0473 and Echvi_0474 are separated by 38 nucleotides Echvi_0474 and Echvi_0475 are separated by 37 nucleotides Echvi_0475 and Echvi_0476 are separated by 182 nucleotides
Echvi_0471: Echvi_0471 - Bacterial regulatory proteins, tetR family., at 519,578 to 520,138
_0471
Echvi_0472: Echvi_0472 - hypothetical protein, at 520,470 to 520,688
_0472
Echvi_0473: Echvi_0473 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 520,723 to 521,754
_0473
Echvi_0474: Echvi_0474 - DoxX., at 521,793 to 522,173
_0474
Echvi_0475: Echvi_0475 - Uncharacterized protein conserved in bacteria, at 522,211 to 522,492
_0475
Echvi_0476: Echvi_0476 - Calcineurin-like phosphoesterase., at 522,675 to 523,334
_0476
Position (kb) 520
521
522 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 519.725 kb on - strand, within Echvi_0471 at 519.887 kb on - strand, within Echvi_0471 at 519.888 kb on + strand, within Echvi_0471 at 519.888 kb on + strand, within Echvi_0471 at 519.888 kb on + strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.903 kb on - strand, within Echvi_0471 at 519.909 kb on - strand, within Echvi_0471 at 519.909 kb on - strand, within Echvi_0471 at 520.017 kb on + strand, within Echvi_0471 at 520.022 kb on + strand, within Echvi_0471 at 520.022 kb on + strand, within Echvi_0471 at 520.022 kb on + strand, within Echvi_0471 at 520.023 kb on - strand, within Echvi_0471 at 520.023 kb on - strand, within Echvi_0471 at 520.078 kb on + strand, within Echvi_0471 at 520.078 kb on + strand, within Echvi_0471 at 520.124 kb on - strand at 520.124 kb on - strand at 520.132 kb on + strand at 520.132 kb on + strand at 520.133 kb on - strand at 520.133 kb on - strand at 520.143 kb on + strand at 520.144 kb on - strand at 520.144 kb on - strand at 520.144 kb on - strand at 520.186 kb on + strand at 520.187 kb on - strand at 520.190 kb on + strand at 520.191 kb on - strand at 520.193 kb on - strand at 520.193 kb on - strand at 520.193 kb on - strand at 520.243 kb on + strand at 520.340 kb on + strand at 520.340 kb on + strand at 520.445 kb on + strand at 520.445 kb on + strand at 520.445 kb on + strand at 520.446 kb on - strand at 520.446 kb on - strand at 520.480 kb on + strand at 520.488 kb on + strand at 520.497 kb on + strand, within Echvi_0472 at 520.499 kb on + strand, within Echvi_0472 at 520.616 kb on - strand, within Echvi_0472 at 520.677 kb on - strand at 520.730 kb on - strand at 520.730 kb on - strand at 520.735 kb on + strand at 520.770 kb on - strand at 520.770 kb on - strand at 520.833 kb on - strand, within Echvi_0473 at 520.962 kb on + strand, within Echvi_0473 at 521.030 kb on + strand, within Echvi_0473 at 521.030 kb on + strand, within Echvi_0473 at 521.030 kb on + strand, within Echvi_0473 at 521.031 kb on - strand, within Echvi_0473 at 521.111 kb on - strand, within Echvi_0473 at 521.123 kb on + strand, within Echvi_0473 at 521.124 kb on - strand, within Echvi_0473 at 521.141 kb on + strand, within Echvi_0473 at 521.174 kb on + strand, within Echvi_0473 at 521.175 kb on - strand, within Echvi_0473 at 521.195 kb on - strand, within Echvi_0473 at 521.195 kb on - strand, within Echvi_0473 at 521.195 kb on - strand, within Echvi_0473 at 521.195 kb on - strand, within Echvi_0473 at 521.196 kb on + strand, within Echvi_0473 at 521.197 kb on - strand, within Echvi_0473 at 521.254 kb on + strand, within Echvi_0473 at 521.254 kb on + strand, within Echvi_0473 at 521.256 kb on + strand, within Echvi_0473 at 521.257 kb on - strand, within Echvi_0473 at 521.288 kb on - strand, within Echvi_0473 at 521.294 kb on - strand, within Echvi_0473 at 521.361 kb on - strand, within Echvi_0473 at 521.483 kb on - strand, within Echvi_0473 at 521.489 kb on + strand, within Echvi_0473 at 521.490 kb on - strand, within Echvi_0473 at 521.490 kb on - strand, within Echvi_0473 at 521.625 kb on + strand, within Echvi_0473 at 521.792 kb on + strand at 521.828 kb on - strand at 521.839 kb on + strand, within Echvi_0474 at 521.840 kb on - strand, within Echvi_0474 at 521.874 kb on + strand, within Echvi_0474 at 521.875 kb on - strand, within Echvi_0474 at 521.882 kb on + strand, within Echvi_0474 at 521.882 kb on + strand, within Echvi_0474 at 521.883 kb on - strand, within Echvi_0474 at 521.883 kb on - strand, within Echvi_0474 at 521.948 kb on - strand, within Echvi_0474 at 522.072 kb on + strand, within Echvi_0474 at 522.072 kb on + strand, within Echvi_0474 at 522.072 kb on + strand, within Echvi_0474 at 522.072 kb on + strand, within Echvi_0474 at 522.072 kb on + strand, within Echvi_0474 at 522.072 kb on + strand, within Echvi_0474 at 522.073 kb on - strand, within Echvi_0474 at 522.073 kb on - strand, within Echvi_0474 at 522.073 kb on - strand, within Echvi_0474 at 522.073 kb on - strand, within Echvi_0474 at 522.073 kb on - strand, within Echvi_0474 at 522.073 kb on - strand, within Echvi_0474 at 522.107 kb on - strand, within Echvi_0474 at 522.107 kb on - strand, within Echvi_0474 at 522.150 kb on + strand at 522.171 kb on + strand at 522.171 kb on + strand at 522.172 kb on - strand at 522.176 kb on + strand at 522.185 kb on - strand at 522.211 kb on - strand at 522.215 kb on - strand at 522.215 kb on - strand at 522.219 kb on + strand at 522.219 kb on + strand at 522.225 kb on + strand at 522.226 kb on - strand at 522.226 kb on - strand at 522.229 kb on + strand at 522.230 kb on - strand at 522.285 kb on - strand, within Echvi_0475 at 522.301 kb on + strand, within Echvi_0475 at 522.362 kb on + strand, within Echvi_0475 at 522.366 kb on + strand, within Echvi_0475 at 522.407 kb on + strand, within Echvi_0475 at 522.421 kb on + strand, within Echvi_0475 at 522.421 kb on + strand, within Echvi_0475 at 522.422 kb on - strand, within Echvi_0475 at 522.422 kb on - strand, within Echvi_0475 at 522.438 kb on + strand, within Echvi_0475 at 522.506 kb on - strand at 522.517 kb on + strand at 522.517 kb on + strand at 522.522 kb on - strand at 522.576 kb on - strand at 522.595 kb on - strand at 522.613 kb on + strand at 522.626 kb on + strand at 522.641 kb on - strand at 522.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 519,725 - Echvi_0471 0.26 +0.5 519,887 - Echvi_0471 0.55 -0.5 519,888 + Echvi_0471 0.55 +0.4 519,888 + Echvi_0471 0.55 -0.8 519,888 + Echvi_0471 0.55 -0.6 519,889 - Echvi_0471 0.55 +0.3 519,889 - Echvi_0471 0.55 +0.1 519,889 - Echvi_0471 0.55 -0.2 519,889 - Echvi_0471 0.55 -0.0 519,903 - Echvi_0471 0.58 -1.5 519,909 - Echvi_0471 0.59 +1.9 519,909 - Echvi_0471 0.59 -0.9 520,017 + Echvi_0471 0.78 -0.5 520,022 + Echvi_0471 0.79 -0.4 520,022 + Echvi_0471 0.79 +0.4 520,022 + Echvi_0471 0.79 -0.0 520,023 - Echvi_0471 0.79 -0.2 520,023 - Echvi_0471 0.79 -0.1 520,078 + Echvi_0471 0.89 -0.1 520,078 + Echvi_0471 0.89 -1.2 520,124 - -1.0 520,124 - +0.2 520,132 + -0.2 520,132 + -0.4 520,133 - +0.3 520,133 - -0.7 520,143 + -0.1 520,144 - -0.4 520,144 - +1.8 520,144 - +0.5 520,186 + -0.6 520,187 - -0.5 520,190 + +1.1 520,191 - -1.1 520,193 - -2.3 520,193 - +0.1 520,193 - -0.0 520,243 + +1.8 520,340 + -0.2 520,340 + +1.2 520,445 + +0.5 520,445 + -1.8 520,445 + +0.2 520,446 - +0.0 520,446 - -0.7 520,480 + -0.9 520,488 + +2.0 520,497 + Echvi_0472 0.12 -1.4 520,499 + Echvi_0472 0.13 -0.0 520,616 - Echvi_0472 0.67 -0.7 520,677 - -1.7 520,730 - -0.4 520,730 - +0.0 520,735 + +0.6 520,770 - -0.7 520,770 - +3.8 520,833 - Echvi_0473 0.11 -0.4 520,962 + Echvi_0473 0.23 +0.0 521,030 + Echvi_0473 0.30 -1.2 521,030 + Echvi_0473 0.30 -1.2 521,030 + Echvi_0473 0.30 -0.3 521,031 - Echvi_0473 0.30 -1.5 521,111 - Echvi_0473 0.38 +1.3 521,123 + Echvi_0473 0.39 +0.0 521,124 - Echvi_0473 0.39 -0.7 521,141 + Echvi_0473 0.41 -0.4 521,174 + Echvi_0473 0.44 -0.9 521,175 - Echvi_0473 0.44 -2.0 521,195 - Echvi_0473 0.46 +0.1 521,195 - Echvi_0473 0.46 -0.1 521,195 - Echvi_0473 0.46 -0.9 521,195 - Echvi_0473 0.46 -0.5 521,196 + Echvi_0473 0.46 -1.0 521,197 - Echvi_0473 0.46 +0.0 521,254 + Echvi_0473 0.51 -0.3 521,254 + Echvi_0473 0.51 -0.7 521,256 + Echvi_0473 0.52 -1.6 521,257 - Echvi_0473 0.52 +0.8 521,288 - Echvi_0473 0.55 -0.9 521,294 - Echvi_0473 0.55 -1.0 521,361 - Echvi_0473 0.62 -1.2 521,483 - Echvi_0473 0.74 +0.4 521,489 + Echvi_0473 0.74 -1.1 521,490 - Echvi_0473 0.74 +0.2 521,490 - Echvi_0473 0.74 -1.5 521,625 + Echvi_0473 0.87 -1.0 521,792 + +1.1 521,828 - -0.0 521,839 + Echvi_0474 0.12 +0.5 521,840 - Echvi_0474 0.12 +1.2 521,874 + Echvi_0474 0.21 +1.8 521,875 - Echvi_0474 0.22 +0.5 521,882 + Echvi_0474 0.23 +1.4 521,882 + Echvi_0474 0.23 -0.2 521,883 - Echvi_0474 0.24 -0.6 521,883 - Echvi_0474 0.24 +0.3 521,948 - Echvi_0474 0.41 +1.3 522,072 + Echvi_0474 0.73 -0.8 522,072 + Echvi_0474 0.73 +0.6 522,072 + Echvi_0474 0.73 -0.9 522,072 + Echvi_0474 0.73 +0.6 522,072 + Echvi_0474 0.73 -1.3 522,072 + Echvi_0474 0.73 +1.8 522,073 - Echvi_0474 0.73 -0.7 522,073 - Echvi_0474 0.73 -1.4 522,073 - Echvi_0474 0.73 -0.7 522,073 - Echvi_0474 0.73 -0.1 522,073 - Echvi_0474 0.73 +1.8 522,073 - Echvi_0474 0.73 +0.6 522,107 - Echvi_0474 0.82 -0.2 522,107 - Echvi_0474 0.82 +0.5 522,150 + +0.2 522,171 + -0.3 522,171 + -0.4 522,172 - -0.5 522,176 + -0.5 522,185 - -1.7 522,211 - -0.5 522,215 - -0.4 522,215 - -1.2 522,219 + +0.8 522,219 + +0.5 522,225 + -0.7 522,226 - +0.0 522,226 - +0.7 522,229 + +0.3 522,230 - -0.3 522,285 - Echvi_0475 0.26 +0.5 522,301 + Echvi_0475 0.32 +0.7 522,362 + Echvi_0475 0.54 -0.4 522,366 + Echvi_0475 0.55 +1.5 522,407 + Echvi_0475 0.70 +0.8 522,421 + Echvi_0475 0.74 -1.9 522,421 + Echvi_0475 0.74 -2.1 522,422 - Echvi_0475 0.75 +2.4 522,422 - Echvi_0475 0.75 -1.4 522,438 + Echvi_0475 0.80 +0.3 522,506 - -0.3 522,517 + -3.5 522,517 + -1.0 522,522 - -1.0 522,576 - -1.0 522,595 - +0.1 522,613 + -0.6 522,626 + +1.2 522,641 - +0.0 522,712 - -0.9
Or see this region's nucleotide sequence