Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17745 and CA264_17750 are separated by 12 nucleotides CA264_17750 and CA264_17755 are separated by 147 nucleotides CA264_17755 and CA264_17760 are separated by 152 nucleotides
CA264_17745: CA264_17745 - TetR family transcriptional regulator, at 4,129,225 to 4,129,836
_17745
CA264_17750: CA264_17750 - hypothetical protein, at 4,129,849 to 4,130,259
_17750
CA264_17755: CA264_17755 - ABC transporter, at 4,130,407 to 4,132,191
_17755
CA264_17760: CA264_17760 - leucine dehydrogenase, at 4,132,344 to 4,133,444
_17760
Position (kb)
4130
4131
4132
4133 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4129.484 kb on - strand, within CA264_17745 at 4129.505 kb on - strand, within CA264_17745 at 4129.613 kb on - strand, within CA264_17745 at 4129.792 kb on + strand at 4129.793 kb on - strand at 4129.850 kb on + strand at 4129.850 kb on + strand at 4129.851 kb on - strand at 4129.865 kb on + strand at 4129.865 kb on + strand at 4129.865 kb on + strand at 4129.865 kb on + strand at 4129.874 kb on - strand at 4129.894 kb on + strand, within CA264_17750 at 4129.895 kb on - strand, within CA264_17750 at 4129.967 kb on + strand, within CA264_17750 at 4130.059 kb on + strand, within CA264_17750 at 4130.061 kb on + strand, within CA264_17750 at 4130.062 kb on - strand, within CA264_17750 at 4130.062 kb on - strand, within CA264_17750 at 4130.062 kb on - strand, within CA264_17750 at 4130.237 kb on - strand at 4130.237 kb on - strand at 4130.283 kb on + strand at 4130.283 kb on + strand at 4130.284 kb on - strand at 4130.291 kb on - strand at 4130.304 kb on + strand at 4130.308 kb on + strand at 4130.309 kb on - strand at 4130.362 kb on + strand at 4130.363 kb on - strand at 4130.469 kb on + strand at 4130.565 kb on + strand at 4130.566 kb on - strand at 4130.730 kb on + strand, within CA264_17755 at 4130.731 kb on - strand, within CA264_17755 at 4130.790 kb on - strand, within CA264_17755 at 4131.343 kb on + strand, within CA264_17755 at 4131.455 kb on + strand, within CA264_17755 at 4131.455 kb on + strand, within CA264_17755 at 4131.514 kb on + strand, within CA264_17755 at 4131.515 kb on - strand, within CA264_17755 at 4131.515 kb on - strand, within CA264_17755 at 4131.515 kb on - strand, within CA264_17755 at 4131.614 kb on + strand, within CA264_17755 at 4131.618 kb on - strand, within CA264_17755 at 4131.676 kb on - strand, within CA264_17755 at 4131.676 kb on - strand, within CA264_17755 at 4131.690 kb on - strand, within CA264_17755 at 4131.690 kb on - strand, within CA264_17755 at 4131.690 kb on - strand, within CA264_17755 at 4131.736 kb on - strand, within CA264_17755 at 4131.818 kb on + strand, within CA264_17755 at 4131.842 kb on + strand, within CA264_17755 at 4131.851 kb on + strand, within CA264_17755 at 4131.852 kb on - strand, within CA264_17755 at 4131.852 kb on - strand, within CA264_17755 at 4131.853 kb on + strand, within CA264_17755 at 4131.854 kb on - strand, within CA264_17755 at 4131.996 kb on - strand, within CA264_17755 at 4131.996 kb on - strand, within CA264_17755 at 4131.996 kb on - strand, within CA264_17755 at 4132.044 kb on + strand at 4132.045 kb on - strand at 4132.045 kb on - strand at 4132.045 kb on - strand at 4132.113 kb on + strand at 4132.114 kb on - strand at 4132.143 kb on + strand at 4132.146 kb on - strand at 4132.146 kb on - strand at 4132.146 kb on - strand at 4132.152 kb on - strand at 4132.160 kb on - strand at 4132.164 kb on - strand at 4132.317 kb on + strand at 4132.341 kb on + strand at 4132.342 kb on - strand at 4132.511 kb on + strand, within CA264_17760 at 4132.512 kb on - strand, within CA264_17760 at 4132.579 kb on - strand, within CA264_17760 at 4132.707 kb on + strand, within CA264_17760 at 4132.708 kb on - strand, within CA264_17760 at 4132.708 kb on - strand, within CA264_17760 at 4132.777 kb on + strand, within CA264_17760 at 4132.833 kb on + strand, within CA264_17760 at 4132.838 kb on + strand, within CA264_17760 at 4132.838 kb on + strand, within CA264_17760 at 4132.838 kb on + strand, within CA264_17760 at 4132.843 kb on - strand, within CA264_17760 at 4132.843 kb on - strand, within CA264_17760 at 4132.843 kb on - strand, within CA264_17760 at 4132.988 kb on + strand, within CA264_17760 at 4133.025 kb on + strand, within CA264_17760 at 4133.058 kb on + strand, within CA264_17760 at 4133.075 kb on + strand, within CA264_17760 at 4133.076 kb on - strand, within CA264_17760 at 4133.076 kb on - strand, within CA264_17760 at 4133.076 kb on - strand, within CA264_17760 at 4133.076 kb on - strand, within CA264_17760 at 4133.079 kb on + strand, within CA264_17760 at 4133.080 kb on - strand, within CA264_17760
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 4,129,484 - CA264_17745 0.42 -0.1 4,129,505 - CA264_17745 0.46 -1.1 4,129,613 - CA264_17745 0.63 -0.8 4,129,792 + -2.0 4,129,793 - -0.1 4,129,850 + -1.4 4,129,850 + -2.9 4,129,851 - -0.5 4,129,865 + -2.2 4,129,865 + -0.6 4,129,865 + -2.7 4,129,865 + -0.7 4,129,874 - -0.6 4,129,894 + CA264_17750 0.11 -0.7 4,129,895 - CA264_17750 0.11 -0.2 4,129,967 + CA264_17750 0.29 -3.7 4,130,059 + CA264_17750 0.51 -0.7 4,130,061 + CA264_17750 0.52 -1.4 4,130,062 - CA264_17750 0.52 -2.4 4,130,062 - CA264_17750 0.52 -0.7 4,130,062 - CA264_17750 0.52 -2.1 4,130,237 - -1.3 4,130,237 - -0.8 4,130,283 + -2.9 4,130,283 + -1.7 4,130,284 - -1.1 4,130,291 - -2.0 4,130,304 + +1.9 4,130,308 + -1.1 4,130,309 - -1.3 4,130,362 + -1.1 4,130,363 - -1.4 4,130,469 + -4.4 4,130,565 + -1.3 4,130,566 - +0.9 4,130,730 + CA264_17755 0.18 +0.3 4,130,731 - CA264_17755 0.18 +0.6 4,130,790 - CA264_17755 0.21 -1.1 4,131,343 + CA264_17755 0.52 -1.1 4,131,455 + CA264_17755 0.59 -1.4 4,131,455 + CA264_17755 0.59 -3.8 4,131,514 + CA264_17755 0.62 -2.3 4,131,515 - CA264_17755 0.62 -0.9 4,131,515 - CA264_17755 0.62 -2.0 4,131,515 - CA264_17755 0.62 -1.6 4,131,614 + CA264_17755 0.68 -3.4 4,131,618 - CA264_17755 0.68 -2.8 4,131,676 - CA264_17755 0.71 -1.3 4,131,676 - CA264_17755 0.71 -1.1 4,131,690 - CA264_17755 0.72 -1.1 4,131,690 - CA264_17755 0.72 -1.9 4,131,690 - CA264_17755 0.72 +0.7 4,131,736 - CA264_17755 0.74 -1.4 4,131,818 + CA264_17755 0.79 -1.9 4,131,842 + CA264_17755 0.80 -3.5 4,131,851 + CA264_17755 0.81 -3.1 4,131,852 - CA264_17755 0.81 -1.1 4,131,852 - CA264_17755 0.81 -0.1 4,131,853 + CA264_17755 0.81 -2.2 4,131,854 - CA264_17755 0.81 -0.3 4,131,996 - CA264_17755 0.89 -2.1 4,131,996 - CA264_17755 0.89 -1.4 4,131,996 - CA264_17755 0.89 -1.1 4,132,044 + -2.3 4,132,045 - -3.6 4,132,045 - -1.8 4,132,045 - +1.5 4,132,113 + -2.2 4,132,114 - -3.4 4,132,143 + -1.7 4,132,146 - +0.5 4,132,146 - -2.7 4,132,146 - -4.0 4,132,152 - -3.2 4,132,160 - -2.3 4,132,164 - -1.9 4,132,317 + -2.5 4,132,341 + -1.8 4,132,342 - -0.8 4,132,511 + CA264_17760 0.15 -0.4 4,132,512 - CA264_17760 0.15 -0.1 4,132,579 - CA264_17760 0.21 -0.3 4,132,707 + CA264_17760 0.33 -1.6 4,132,708 - CA264_17760 0.33 -1.5 4,132,708 - CA264_17760 0.33 +0.2 4,132,777 + CA264_17760 0.39 -1.7 4,132,833 + CA264_17760 0.44 +0.9 4,132,838 + CA264_17760 0.45 -3.2 4,132,838 + CA264_17760 0.45 -2.9 4,132,838 + CA264_17760 0.45 -2.6 4,132,843 - CA264_17760 0.45 -0.5 4,132,843 - CA264_17760 0.45 -1.8 4,132,843 - CA264_17760 0.45 -1.1 4,132,988 + CA264_17760 0.58 -0.1 4,133,025 + CA264_17760 0.62 -4.4 4,133,058 + CA264_17760 0.65 -4.0 4,133,075 + CA264_17760 0.66 -1.7 4,133,076 - CA264_17760 0.66 -1.1 4,133,076 - CA264_17760 0.66 -0.5 4,133,076 - CA264_17760 0.66 +0.4 4,133,076 - CA264_17760 0.66 -0.8 4,133,079 + CA264_17760 0.67 -0.1 4,133,080 - CA264_17760 0.67 -0.9
Or see this region's nucleotide sequence