Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15815

Experiment: m.b. Tetracycline 0.003 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_15800 and CA264_15805 are separated by 139 nucleotidesCA264_15805 and CA264_15810 are separated by 38 nucleotidesCA264_15810 and CA264_15815 are separated by 7 nucleotidesCA264_15815 and CA264_15820 are separated by 203 nucleotides CA264_15800: CA264_15800 - hypothetical protein, at 3,687,017 to 3,687,549 _15800 CA264_15805: CA264_15805 - hypothetical protein, at 3,687,689 to 3,687,928 _15805 CA264_15810: CA264_15810 - hypothetical protein, at 3,687,967 to 3,688,353 _15810 CA264_15815: CA264_15815 - hypothetical protein, at 3,688,361 to 3,688,936 _15815 CA264_15820: CA264_15820 - transcription-repair coupling factor, at 3,689,140 to 3,692,511 _15820 Position (kb) 3688 3689Strain fitness (log2 ratio) -2 -1 0 1 2at 3687.362 kb on + strand, within CA264_15800at 3687.400 kb on - strand, within CA264_15800at 3687.459 kb on + strand, within CA264_15800at 3687.554 kb on + strandat 3687.557 kb on + strandat 3687.560 kb on - strandat 3687.560 kb on - strandat 3687.567 kb on + strandat 3687.568 kb on - strandat 3687.589 kb on - strandat 3687.604 kb on - strandat 3687.770 kb on + strand, within CA264_15805at 3687.771 kb on - strand, within CA264_15805at 3687.833 kb on + strand, within CA264_15805at 3687.833 kb on + strand, within CA264_15805at 3687.834 kb on - strand, within CA264_15805at 3687.900 kb on + strand, within CA264_15805at 3687.901 kb on - strand, within CA264_15805at 3687.901 kb on - strand, within CA264_15805at 3687.942 kb on - strandat 3688.008 kb on + strand, within CA264_15810at 3688.024 kb on + strand, within CA264_15810at 3688.062 kb on + strand, within CA264_15810at 3688.064 kb on + strand, within CA264_15810at 3688.090 kb on + strand, within CA264_15810at 3688.090 kb on + strand, within CA264_15810at 3688.171 kb on + strand, within CA264_15810at 3688.171 kb on + strand, within CA264_15810at 3688.180 kb on + strand, within CA264_15810at 3688.203 kb on + strand, within CA264_15810at 3688.276 kb on - strand, within CA264_15810at 3688.299 kb on + strand, within CA264_15810at 3688.359 kb on - strandat 3688.402 kb on + strandat 3688.402 kb on + strandat 3688.409 kb on + strandat 3688.441 kb on + strand, within CA264_15815at 3688.442 kb on - strand, within CA264_15815at 3688.446 kb on - strand, within CA264_15815at 3688.457 kb on - strand, within CA264_15815at 3688.457 kb on - strand, within CA264_15815at 3688.466 kb on - strand, within CA264_15815at 3688.481 kb on - strand, within CA264_15815at 3688.499 kb on + strand, within CA264_15815at 3688.499 kb on + strand, within CA264_15815at 3688.510 kb on + strand, within CA264_15815at 3688.561 kb on - strand, within CA264_15815at 3688.655 kb on + strand, within CA264_15815at 3688.656 kb on - strand, within CA264_15815at 3688.674 kb on - strand, within CA264_15815at 3688.690 kb on + strand, within CA264_15815at 3688.690 kb on + strand, within CA264_15815at 3688.690 kb on + strand, within CA264_15815at 3688.690 kb on + strand, within CA264_15815at 3688.691 kb on - strand, within CA264_15815at 3688.773 kb on + strand, within CA264_15815at 3688.774 kb on - strand, within CA264_15815at 3688.774 kb on - strand, within CA264_15815at 3688.774 kb on - strand, within CA264_15815at 3688.803 kb on + strand, within CA264_15815at 3688.803 kb on + strand, within CA264_15815at 3688.803 kb on + strand, within CA264_15815at 3688.804 kb on - strand, within CA264_15815at 3688.829 kb on + strand, within CA264_15815at 3688.835 kb on + strand, within CA264_15815at 3688.836 kb on - strand, within CA264_15815at 3688.883 kb on - strandat 3688.900 kb on - strandat 3688.914 kb on - strandat 3688.916 kb on - strandat 3688.945 kb on - strandat 3688.950 kb on - strandat 3688.984 kb on + strandat 3688.984 kb on + strandat 3688.989 kb on + strandat 3688.989 kb on + strandat 3689.040 kb on - strandat 3689.053 kb on + strandat 3689.053 kb on + strandat 3689.053 kb on + strandat 3689.054 kb on - strandat 3689.054 kb on - strandat 3689.059 kb on + strandat 3689.097 kb on - strandat 3689.128 kb on + strandat 3689.147 kb on + strandat 3689.160 kb on - strandat 3689.342 kb on - strandat 3689.342 kb on - strandat 3689.348 kb on - strandat 3689.348 kb on - strandat 3689.407 kb on + strandat 3689.408 kb on - strandat 3689.408 kb on - strandat 3689.419 kb on + strandat 3689.419 kb on + strandat 3689.419 kb on + strandat 3689.420 kb on - strandat 3689.421 kb on + strandat 3689.450 kb on + strandat 3689.451 kb on - strandat 3689.451 kb on - strandat 3689.571 kb on + strand, within CA264_15820at 3689.588 kb on + strand, within CA264_15820at 3689.589 kb on - strand, within CA264_15820at 3689.635 kb on + strand, within CA264_15820at 3689.662 kb on + strand, within CA264_15820at 3689.677 kb on + strand, within CA264_15820at 3689.678 kb on - strand, within CA264_15820at 3689.678 kb on - strand, within CA264_15820at 3689.707 kb on + strand, within CA264_15820at 3689.713 kb on + strand, within CA264_15820at 3689.731 kb on + strand, within CA264_15820at 3689.766 kb on + strand, within CA264_15820at 3689.769 kb on - strand, within CA264_15820at 3689.838 kb on - strand, within CA264_15820at 3689.849 kb on + strand, within CA264_15820at 3689.850 kb on - strand, within CA264_15820at 3689.910 kb on + strand, within CA264_15820at 3689.910 kb on + strand, within CA264_15820at 3689.919 kb on - strand, within CA264_15820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
remove
3,687,362 + CA264_15800 0.65 +0.2
3,687,400 - CA264_15800 0.72 -0.7
3,687,459 + CA264_15800 0.83 +0.3
3,687,554 + +0.9
3,687,557 + -0.7
3,687,560 - +1.9
3,687,560 - -0.3
3,687,567 + -0.5
3,687,568 - -0.0
3,687,589 - -1.7
3,687,604 - -0.5
3,687,770 + CA264_15805 0.34 -0.6
3,687,771 - CA264_15805 0.34 +1.0
3,687,833 + CA264_15805 0.60 +0.1
3,687,833 + CA264_15805 0.60 -0.7
3,687,834 - CA264_15805 0.60 -0.9
3,687,900 + CA264_15805 0.88 -0.7
3,687,901 - CA264_15805 0.88 -0.3
3,687,901 - CA264_15805 0.88 -1.8
3,687,942 - -0.1
3,688,008 + CA264_15810 0.11 -2.0
3,688,024 + CA264_15810 0.15 -0.8
3,688,062 + CA264_15810 0.25 -1.1
3,688,064 + CA264_15810 0.25 +0.2
3,688,090 + CA264_15810 0.32 -0.9
3,688,090 + CA264_15810 0.32 -0.6
3,688,171 + CA264_15810 0.53 -0.1
3,688,171 + CA264_15810 0.53 -0.9
3,688,180 + CA264_15810 0.55 -0.8
3,688,203 + CA264_15810 0.61 +0.7
3,688,276 - CA264_15810 0.80 -1.7
3,688,299 + CA264_15810 0.86 +0.6
3,688,359 - -0.5
3,688,402 + -0.2
3,688,402 + -0.5
3,688,409 + -0.3
3,688,441 + CA264_15815 0.14 -0.7
3,688,442 - CA264_15815 0.14 +0.0
3,688,446 - CA264_15815 0.15 -1.4
3,688,457 - CA264_15815 0.17 -2.6
3,688,457 - CA264_15815 0.17 -0.4
3,688,466 - CA264_15815 0.18 -1.1
3,688,481 - CA264_15815 0.21 +0.5
3,688,499 + CA264_15815 0.24 -1.1
3,688,499 + CA264_15815 0.24 +0.9
3,688,510 + CA264_15815 0.26 -0.4
3,688,561 - CA264_15815 0.35 +1.5
3,688,655 + CA264_15815 0.51 -0.4
3,688,656 - CA264_15815 0.51 -0.7
3,688,674 - CA264_15815 0.54 -0.5
3,688,690 + CA264_15815 0.57 +0.0
3,688,690 + CA264_15815 0.57 -0.5
3,688,690 + CA264_15815 0.57 -0.1
3,688,690 + CA264_15815 0.57 -0.3
3,688,691 - CA264_15815 0.57 +0.6
3,688,773 + CA264_15815 0.72 -0.8
3,688,774 - CA264_15815 0.72 -0.5
3,688,774 - CA264_15815 0.72 -0.3
3,688,774 - CA264_15815 0.72 -1.2
3,688,803 + CA264_15815 0.77 -0.4
3,688,803 + CA264_15815 0.77 -0.3
3,688,803 + CA264_15815 0.77 -0.1
3,688,804 - CA264_15815 0.77 -0.8
3,688,829 + CA264_15815 0.81 -2.1
3,688,835 + CA264_15815 0.82 +0.3
3,688,836 - CA264_15815 0.82 +1.2
3,688,883 - -0.4
3,688,900 - -0.9
3,688,914 - -0.8
3,688,916 - -0.1
3,688,945 - -0.9
3,688,950 - -0.1
3,688,984 + +0.3
3,688,984 + -0.7
3,688,989 + -0.3
3,688,989 + +0.2
3,689,040 - +0.3
3,689,053 + -1.9
3,689,053 + -1.1
3,689,053 + -0.1
3,689,054 - -0.6
3,689,054 - -0.6
3,689,059 + +0.9
3,689,097 - -1.0
3,689,128 + -0.1
3,689,147 + +0.8
3,689,160 - -1.1
3,689,342 - +0.8
3,689,342 - -0.2
3,689,348 - +0.1
3,689,348 - +1.0
3,689,407 + +0.5
3,689,408 - -0.4
3,689,408 - +0.9
3,689,419 + +0.3
3,689,419 + +0.4
3,689,419 + +1.3
3,689,420 - -0.4
3,689,421 + +0.4
3,689,450 + +1.3
3,689,451 - +0.9
3,689,451 - +0.3
3,689,571 + CA264_15820 0.13 +0.5
3,689,588 + CA264_15820 0.13 -0.2
3,689,589 - CA264_15820 0.13 -1.0
3,689,635 + CA264_15820 0.15 -0.0
3,689,662 + CA264_15820 0.15 +0.3
3,689,677 + CA264_15820 0.16 -1.4
3,689,678 - CA264_15820 0.16 +0.3
3,689,678 - CA264_15820 0.16 +0.4
3,689,707 + CA264_15820 0.17 -0.1
3,689,713 + CA264_15820 0.17 -0.5
3,689,731 + CA264_15820 0.18 -0.3
3,689,766 + CA264_15820 0.19 +1.5
3,689,769 - CA264_15820 0.19 -0.3
3,689,838 - CA264_15820 0.21 -0.4
3,689,849 + CA264_15820 0.21 +0.9
3,689,850 - CA264_15820 0.21 +0.3
3,689,910 + CA264_15820 0.23 +1.4
3,689,910 + CA264_15820 0.23 +1.5
3,689,919 - CA264_15820 0.23 +0.0

Or see this region's nucleotide sequence