Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15635

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15625 and CA264_15630 are separated by 204 nucleotidesCA264_15630 and CA264_15635 are separated by 91 nucleotidesCA264_15635 and CA264_15640 are separated by 141 nucleotides CA264_15625: CA264_15625 - sterol desaturase, at 3,652,488 to 3,653,270 _15625 CA264_15630: CA264_15630 - haloacid dehalogenase, type II, at 3,653,475 to 3,654,173 _15630 CA264_15635: CA264_15635 - hypothetical protein, at 3,654,265 to 3,655,440 _15635 CA264_15640: CA264_15640 - hypothetical protein, at 3,655,582 to 3,656,283 _15640 Position (kb) 3654 3655 3656Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3653.277 kb on - strandat 3653.277 kb on - strandat 3653.283 kb on + strandat 3653.283 kb on + strandat 3653.284 kb on - strandat 3653.284 kb on - strandat 3653.288 kb on - strandat 3653.294 kb on + strandat 3653.294 kb on + strandat 3653.295 kb on - strandat 3653.296 kb on + strandat 3653.300 kb on + strandat 3653.300 kb on + strandat 3653.301 kb on - strandat 3653.301 kb on - strandat 3653.306 kb on + strandat 3653.307 kb on - strandat 3653.307 kb on - strandat 3653.307 kb on - strandat 3653.307 kb on - strandat 3653.312 kb on + strandat 3653.312 kb on + strandat 3653.423 kb on - strandat 3653.426 kb on + strandat 3653.427 kb on - strandat 3653.427 kb on - strandat 3653.454 kb on + strandat 3653.454 kb on + strandat 3653.530 kb on + strandat 3653.530 kb on + strandat 3653.603 kb on + strand, within CA264_15630at 3653.623 kb on + strand, within CA264_15630at 3653.623 kb on + strand, within CA264_15630at 3653.624 kb on - strand, within CA264_15630at 3653.657 kb on + strand, within CA264_15630at 3653.661 kb on + strand, within CA264_15630at 3653.662 kb on - strand, within CA264_15630at 3653.729 kb on - strand, within CA264_15630at 3653.729 kb on - strand, within CA264_15630at 3653.962 kb on - strand, within CA264_15630at 3654.097 kb on - strand, within CA264_15630at 3654.166 kb on + strandat 3654.182 kb on + strandat 3654.183 kb on - strandat 3654.183 kb on - strandat 3654.238 kb on + strandat 3654.239 kb on - strandat 3654.249 kb on + strandat 3654.249 kb on + strandat 3654.249 kb on + strandat 3654.250 kb on - strandat 3654.250 kb on - strandat 3654.250 kb on - strandat 3654.275 kb on + strandat 3654.276 kb on - strandat 3654.349 kb on - strandat 3654.491 kb on + strand, within CA264_15635at 3654.569 kb on + strand, within CA264_15635at 3654.570 kb on - strand, within CA264_15635at 3654.603 kb on + strand, within CA264_15635at 3654.604 kb on - strand, within CA264_15635at 3654.604 kb on - strand, within CA264_15635at 3654.622 kb on + strand, within CA264_15635at 3654.623 kb on - strand, within CA264_15635at 3654.624 kb on + strand, within CA264_15635at 3654.624 kb on + strand, within CA264_15635at 3654.624 kb on + strand, within CA264_15635at 3654.624 kb on + strand, within CA264_15635at 3654.625 kb on - strand, within CA264_15635at 3654.625 kb on - strand, within CA264_15635at 3654.625 kb on - strand, within CA264_15635at 3654.625 kb on - strand, within CA264_15635at 3654.625 kb on - strand, within CA264_15635at 3654.625 kb on - strand, within CA264_15635at 3654.701 kb on + strand, within CA264_15635at 3654.701 kb on + strand, within CA264_15635at 3654.701 kb on + strand, within CA264_15635at 3654.702 kb on - strand, within CA264_15635at 3654.744 kb on - strand, within CA264_15635at 3654.763 kb on - strand, within CA264_15635at 3654.783 kb on + strand, within CA264_15635at 3654.835 kb on - strand, within CA264_15635at 3654.860 kb on + strand, within CA264_15635at 3654.860 kb on + strand, within CA264_15635at 3654.861 kb on - strand, within CA264_15635at 3654.927 kb on - strand, within CA264_15635at 3654.927 kb on - strand, within CA264_15635at 3655.210 kb on + strand, within CA264_15635at 3655.210 kb on + strand, within CA264_15635at 3655.211 kb on - strand, within CA264_15635at 3655.213 kb on - strand, within CA264_15635at 3655.292 kb on + strand, within CA264_15635at 3655.293 kb on - strand, within CA264_15635at 3655.293 kb on - strand, within CA264_15635at 3655.333 kb on - strandat 3655.336 kb on + strandat 3655.337 kb on - strandat 3655.361 kb on + strandat 3655.361 kb on + strandat 3655.362 kb on - strandat 3655.398 kb on + strandat 3655.398 kb on + strandat 3655.399 kb on - strandat 3655.399 kb on - strandat 3655.399 kb on - strandat 3655.399 kb on - strandat 3655.401 kb on + strandat 3655.401 kb on + strandat 3655.443 kb on - strandat 3655.461 kb on + strandat 3655.472 kb on + strandat 3655.484 kb on - strandat 3655.485 kb on + strandat 3655.486 kb on - strandat 3655.491 kb on + strandat 3655.491 kb on + strandat 3655.491 kb on + strandat 3655.505 kb on + strandat 3655.505 kb on + strandat 3655.505 kb on + strandat 3655.506 kb on - strandat 3655.511 kb on - strandat 3655.552 kb on + strandat 3655.577 kb on - strandat 3655.616 kb on + strandat 3655.616 kb on + strandat 3655.616 kb on + strandat 3655.618 kb on + strandat 3655.618 kb on + strandat 3655.619 kb on - strandat 3655.628 kb on + strandat 3655.628 kb on + strandat 3655.693 kb on + strand, within CA264_15640at 3655.694 kb on - strand, within CA264_15640at 3655.699 kb on + strand, within CA264_15640at 3655.700 kb on - strand, within CA264_15640at 3655.713 kb on + strand, within CA264_15640at 3655.723 kb on + strand, within CA264_15640at 3655.723 kb on + strand, within CA264_15640at 3655.724 kb on - strand, within CA264_15640at 3655.752 kb on + strand, within CA264_15640at 3655.760 kb on + strand, within CA264_15640at 3655.805 kb on + strand, within CA264_15640at 3655.821 kb on + strand, within CA264_15640at 3655.821 kb on + strand, within CA264_15640at 3655.821 kb on + strand, within CA264_15640at 3655.821 kb on + strand, within CA264_15640at 3655.821 kb on + strand, within CA264_15640at 3655.823 kb on + strand, within CA264_15640at 3655.824 kb on - strand, within CA264_15640at 3655.874 kb on + strand, within CA264_15640at 3655.938 kb on + strand, within CA264_15640at 3655.939 kb on - strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.941 kb on - strand, within CA264_15640at 3655.941 kb on - strand, within CA264_15640at 3655.953 kb on + strand, within CA264_15640at 3656.027 kb on + strand, within CA264_15640at 3656.027 kb on + strand, within CA264_15640at 3656.028 kb on - strand, within CA264_15640at 3656.058 kb on + strand, within CA264_15640at 3656.066 kb on + strand, within CA264_15640at 3656.067 kb on - strand, within CA264_15640at 3656.094 kb on - strand, within CA264_15640at 3656.154 kb on - strand, within CA264_15640at 3656.203 kb on + strand, within CA264_15640at 3656.204 kb on - strand, within CA264_15640at 3656.204 kb on - strand, within CA264_15640at 3656.204 kb on - strand, within CA264_15640at 3656.242 kb on + strandat 3656.291 kb on - strandat 3656.382 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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3,653,277 - -0.7
3,653,277 - +0.2
3,653,283 + +0.4
3,653,283 + +2.9
3,653,284 - -2.1
3,653,284 - -0.7
3,653,288 - -0.7
3,653,294 + +0.5
3,653,294 + +0.1
3,653,295 - +0.3
3,653,296 + +0.3
3,653,300 + -0.4
3,653,300 + -0.5
3,653,301 - +1.1
3,653,301 - +0.1
3,653,306 + -0.3
3,653,307 - -0.1
3,653,307 - +0.9
3,653,307 - +0.9
3,653,307 - -0.1
3,653,312 + -0.3
3,653,312 + +0.2
3,653,423 - +0.2
3,653,426 + -0.7
3,653,427 - +0.1
3,653,427 - +1.2
3,653,454 + -0.7
3,653,454 + +0.3
3,653,530 + +0.7
3,653,530 + +0.3
3,653,603 + CA264_15630 0.18 -0.9
3,653,623 + CA264_15630 0.21 +0.9
3,653,623 + CA264_15630 0.21 -0.7
3,653,624 - CA264_15630 0.21 -1.1
3,653,657 + CA264_15630 0.26 +0.4
3,653,661 + CA264_15630 0.27 +0.7
3,653,662 - CA264_15630 0.27 -0.7
3,653,729 - CA264_15630 0.36 -0.6
3,653,729 - CA264_15630 0.36 -0.1
3,653,962 - CA264_15630 0.70 +0.5
3,654,097 - CA264_15630 0.89 +0.7
3,654,166 + +0.3
3,654,182 + +0.6
3,654,183 - -0.5
3,654,183 - -0.3
3,654,238 + -0.6
3,654,239 - -1.1
3,654,249 + -0.8
3,654,249 + +0.4
3,654,249 + -0.7
3,654,250 - -0.8
3,654,250 - +0.0
3,654,250 - +0.1
3,654,275 + -1.1
3,654,276 - -0.8
3,654,349 - +0.8
3,654,491 + CA264_15635 0.19 -0.1
3,654,569 + CA264_15635 0.26 +0.6
3,654,570 - CA264_15635 0.26 +0.3
3,654,603 + CA264_15635 0.29 +0.0
3,654,604 - CA264_15635 0.29 +0.4
3,654,604 - CA264_15635 0.29 +0.7
3,654,622 + CA264_15635 0.30 -0.3
3,654,623 - CA264_15635 0.30 +0.6
3,654,624 + CA264_15635 0.31 -0.7
3,654,624 + CA264_15635 0.31 -0.9
3,654,624 + CA264_15635 0.31 +0.2
3,654,624 + CA264_15635 0.31 +0.9
3,654,625 - CA264_15635 0.31 +0.5
3,654,625 - CA264_15635 0.31 -0.6
3,654,625 - CA264_15635 0.31 +0.9
3,654,625 - CA264_15635 0.31 +0.8
3,654,625 - CA264_15635 0.31 +0.4
3,654,625 - CA264_15635 0.31 +0.4
3,654,701 + CA264_15635 0.37 -0.1
3,654,701 + CA264_15635 0.37 +0.9
3,654,701 + CA264_15635 0.37 -0.3
3,654,702 - CA264_15635 0.37 +0.5
3,654,744 - CA264_15635 0.41 -0.8
3,654,763 - CA264_15635 0.42 +0.2
3,654,783 + CA264_15635 0.44 +0.4
3,654,835 - CA264_15635 0.48 -0.3
3,654,860 + CA264_15635 0.51 +0.6
3,654,860 + CA264_15635 0.51 -0.4
3,654,861 - CA264_15635 0.51 +0.2
3,654,927 - CA264_15635 0.56 -0.7
3,654,927 - CA264_15635 0.56 +0.9
3,655,210 + CA264_15635 0.80 +0.2
3,655,210 + CA264_15635 0.80 +0.4
3,655,211 - CA264_15635 0.80 -0.1
3,655,213 - CA264_15635 0.81 -0.2
3,655,292 + CA264_15635 0.87 +0.1
3,655,293 - CA264_15635 0.87 +2.0
3,655,293 - CA264_15635 0.87 +0.7
3,655,333 - +0.7
3,655,336 + +1.1
3,655,337 - +0.5
3,655,361 + +0.4
3,655,361 + +0.9
3,655,362 - -0.6
3,655,398 + +0.0
3,655,398 + -1.1
3,655,399 - -0.1
3,655,399 - +0.4
3,655,399 - -0.1
3,655,399 - +0.9
3,655,401 + -3.0
3,655,401 + +0.3
3,655,443 - -0.1
3,655,461 + +0.7
3,655,472 + +0.5
3,655,484 - +0.3
3,655,485 + +1.9
3,655,486 - +0.9
3,655,491 + +0.2
3,655,491 + -0.1
3,655,491 + +0.9
3,655,505 + +0.0
3,655,505 + -0.7
3,655,505 + -0.3
3,655,506 - +2.5
3,655,511 - +0.4
3,655,552 + +0.2
3,655,577 - +0.3
3,655,616 + -0.2
3,655,616 + +0.5
3,655,616 + +0.5
3,655,618 + +0.2
3,655,618 + -0.3
3,655,619 - +0.9
3,655,628 + +0.5
3,655,628 + -0.9
3,655,693 + CA264_15640 0.16 +1.0
3,655,694 - CA264_15640 0.16 +0.8
3,655,699 + CA264_15640 0.17 -0.8
3,655,700 - CA264_15640 0.17 +0.7
3,655,713 + CA264_15640 0.19 +1.3
3,655,723 + CA264_15640 0.20 -0.4
3,655,723 + CA264_15640 0.20 -0.7
3,655,724 - CA264_15640 0.20 +0.0
3,655,752 + CA264_15640 0.24 +0.6
3,655,760 + CA264_15640 0.25 +0.1
3,655,805 + CA264_15640 0.32 -0.9
3,655,821 + CA264_15640 0.34 +0.2
3,655,821 + CA264_15640 0.34 +0.3
3,655,821 + CA264_15640 0.34 -1.4
3,655,821 + CA264_15640 0.34 -0.3
3,655,821 + CA264_15640 0.34 +0.2
3,655,823 + CA264_15640 0.34 +0.2
3,655,824 - CA264_15640 0.34 +1.5
3,655,874 + CA264_15640 0.42 -1.1
3,655,938 + CA264_15640 0.51 -1.4
3,655,939 - CA264_15640 0.51 +1.9
3,655,940 + CA264_15640 0.51 +0.9
3,655,940 + CA264_15640 0.51 +1.4
3,655,940 + CA264_15640 0.51 +1.4
3,655,940 + CA264_15640 0.51 -1.6
3,655,940 + CA264_15640 0.51 +0.4
3,655,940 + CA264_15640 0.51 -0.3
3,655,940 + CA264_15640 0.51 -0.7
3,655,940 + CA264_15640 0.51 -1.3
3,655,941 - CA264_15640 0.51 +0.3
3,655,941 - CA264_15640 0.51 +0.4
3,655,953 + CA264_15640 0.53 +0.2
3,656,027 + CA264_15640 0.63 -0.2
3,656,027 + CA264_15640 0.63 -0.1
3,656,028 - CA264_15640 0.64 +0.3
3,656,058 + CA264_15640 0.68 +0.5
3,656,066 + CA264_15640 0.69 +1.1
3,656,067 - CA264_15640 0.69 -0.2
3,656,094 - CA264_15640 0.73 +0.3
3,656,154 - CA264_15640 0.81 -0.2
3,656,203 + CA264_15640 0.88 -0.2
3,656,204 - CA264_15640 0.89 +0.8
3,656,204 - CA264_15640 0.89 +0.3
3,656,204 - CA264_15640 0.89 +1.1
3,656,242 + -0.2
3,656,291 - -0.7
3,656,382 + -0.7

Or see this region's nucleotide sequence