Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14600

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14595 and CA264_14600 are separated by 170 nucleotidesCA264_14600 and CA264_14605 are separated by 15 nucleotides CA264_14595: CA264_14595 - sodium-independent anion transporter, at 3,430,743 to 3,432,284 _14595 CA264_14600: CA264_14600 - serine hydrolase, at 3,432,455 to 3,433,606 _14600 CA264_14605: CA264_14605 - hypothetical protein, at 3,433,622 to 3,436,825 _14605 Position (kb) 3432 3433 3434Strain fitness (log2 ratio) -2 -1 0 1 2at 3431.684 kb on + strand, within CA264_14595at 3431.702 kb on - strand, within CA264_14595at 3431.702 kb on - strand, within CA264_14595at 3431.757 kb on - strand, within CA264_14595at 3431.903 kb on + strand, within CA264_14595at 3431.961 kb on + strand, within CA264_14595at 3431.961 kb on + strand, within CA264_14595at 3431.962 kb on - strand, within CA264_14595at 3431.980 kb on + strand, within CA264_14595at 3431.981 kb on - strand, within CA264_14595at 3431.988 kb on + strand, within CA264_14595at 3431.988 kb on + strand, within CA264_14595at 3431.989 kb on - strand, within CA264_14595at 3432.181 kb on + strandat 3432.194 kb on + strandat 3432.195 kb on - strandat 3432.200 kb on - strandat 3432.236 kb on + strandat 3432.236 kb on + strandat 3432.237 kb on - strandat 3432.237 kb on - strandat 3432.272 kb on + strandat 3432.272 kb on + strandat 3432.272 kb on + strandat 3432.287 kb on + strandat 3432.288 kb on - strandat 3432.291 kb on + strandat 3432.291 kb on + strandat 3432.292 kb on - strandat 3432.292 kb on - strandat 3432.298 kb on - strandat 3432.303 kb on - strandat 3432.430 kb on + strandat 3432.435 kb on + strandat 3432.435 kb on + strandat 3432.435 kb on + strandat 3432.436 kb on - strandat 3432.440 kb on + strandat 3432.456 kb on + strandat 3432.456 kb on + strandat 3432.457 kb on - strandat 3432.469 kb on + strandat 3432.469 kb on + strandat 3432.469 kb on + strandat 3432.469 kb on + strandat 3432.470 kb on - strandat 3432.494 kb on + strandat 3432.577 kb on + strand, within CA264_14600at 3432.577 kb on + strand, within CA264_14600at 3432.580 kb on + strand, within CA264_14600at 3432.580 kb on + strand, within CA264_14600at 3432.580 kb on + strand, within CA264_14600at 3432.580 kb on + strand, within CA264_14600at 3432.582 kb on + strand, within CA264_14600at 3432.582 kb on + strand, within CA264_14600at 3432.584 kb on - strand, within CA264_14600at 3432.595 kb on + strand, within CA264_14600at 3432.596 kb on - strand, within CA264_14600at 3432.606 kb on + strand, within CA264_14600at 3432.607 kb on - strand, within CA264_14600at 3432.657 kb on + strand, within CA264_14600at 3432.723 kb on + strand, within CA264_14600at 3432.724 kb on - strand, within CA264_14600at 3432.771 kb on + strand, within CA264_14600at 3432.773 kb on + strand, within CA264_14600at 3432.773 kb on + strand, within CA264_14600at 3432.836 kb on - strand, within CA264_14600at 3432.909 kb on + strand, within CA264_14600at 3433.047 kb on + strand, within CA264_14600at 3433.084 kb on - strand, within CA264_14600at 3433.136 kb on + strand, within CA264_14600at 3433.136 kb on + strand, within CA264_14600at 3433.137 kb on - strand, within CA264_14600at 3433.376 kb on + strand, within CA264_14600at 3433.395 kb on - strand, within CA264_14600at 3433.405 kb on - strand, within CA264_14600at 3433.467 kb on - strand, within CA264_14600at 3433.483 kb on + strand, within CA264_14600at 3433.512 kb on + strandat 3433.518 kb on + strandat 3433.519 kb on - strandat 3433.519 kb on - strandat 3433.542 kb on + strandat 3433.647 kb on + strandat 3433.648 kb on - strandat 3433.655 kb on - strandat 3433.662 kb on - strandat 3433.744 kb on - strandat 3433.768 kb on - strandat 3433.772 kb on - strandat 3433.775 kb on + strandat 3433.776 kb on - strandat 3433.783 kb on + strandat 3433.846 kb on + strandat 3433.875 kb on + strandat 3433.876 kb on - strandat 3433.937 kb on - strandat 3433.953 kb on + strand, within CA264_14605at 3433.953 kb on + strand, within CA264_14605at 3433.953 kb on + strand, within CA264_14605at 3433.954 kb on - strand, within CA264_14605at 3433.954 kb on - strand, within CA264_14605at 3433.958 kb on + strand, within CA264_14605at 3433.958 kb on + strand, within CA264_14605at 3434.131 kb on + strand, within CA264_14605at 3434.132 kb on - strand, within CA264_14605at 3434.189 kb on + strand, within CA264_14605at 3434.189 kb on + strand, within CA264_14605at 3434.190 kb on - strand, within CA264_14605at 3434.190 kb on - strand, within CA264_14605at 3434.204 kb on + strand, within CA264_14605at 3434.230 kb on - strand, within CA264_14605at 3434.230 kb on - strand, within CA264_14605at 3434.230 kb on - strand, within CA264_14605at 3434.280 kb on - strand, within CA264_14605at 3434.358 kb on + strand, within CA264_14605at 3434.424 kb on + strand, within CA264_14605at 3434.462 kb on + strand, within CA264_14605

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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3,431,684 + CA264_14595 0.61 -0.4
3,431,702 - CA264_14595 0.62 +0.5
3,431,702 - CA264_14595 0.62 -0.1
3,431,757 - CA264_14595 0.66 -0.2
3,431,903 + CA264_14595 0.75 -0.4
3,431,961 + CA264_14595 0.79 -0.3
3,431,961 + CA264_14595 0.79 +0.3
3,431,962 - CA264_14595 0.79 -0.2
3,431,980 + CA264_14595 0.80 -0.2
3,431,981 - CA264_14595 0.80 +0.8
3,431,988 + CA264_14595 0.81 +0.1
3,431,988 + CA264_14595 0.81 +1.8
3,431,989 - CA264_14595 0.81 +0.8
3,432,181 + +1.0
3,432,194 + -1.2
3,432,195 - -0.2
3,432,200 - -0.6
3,432,236 + +0.6
3,432,236 + -0.2
3,432,237 - -0.8
3,432,237 - -0.6
3,432,272 + -0.3
3,432,272 + -0.8
3,432,272 + +0.5
3,432,287 + +1.5
3,432,288 - +0.5
3,432,291 + +0.3
3,432,291 + -2.2
3,432,292 - +0.1
3,432,292 - -1.5
3,432,298 - -0.8
3,432,303 - -0.3
3,432,430 + -0.3
3,432,435 + +0.8
3,432,435 + -1.5
3,432,435 + -1.4
3,432,436 - +1.5
3,432,440 + -0.4
3,432,456 + -0.2
3,432,456 + -1.0
3,432,457 - -1.2
3,432,469 + +0.5
3,432,469 + -0.2
3,432,469 + +0.3
3,432,469 + +0.0
3,432,470 - -0.5
3,432,494 + +1.4
3,432,577 + CA264_14600 0.11 -0.1
3,432,577 + CA264_14600 0.11 +0.8
3,432,580 + CA264_14600 0.11 +0.6
3,432,580 + CA264_14600 0.11 +0.2
3,432,580 + CA264_14600 0.11 -0.0
3,432,580 + CA264_14600 0.11 +0.8
3,432,582 + CA264_14600 0.11 -0.2
3,432,582 + CA264_14600 0.11 -1.2
3,432,584 - CA264_14600 0.11 -1.5
3,432,595 + CA264_14600 0.12 -0.4
3,432,596 - CA264_14600 0.12 +0.1
3,432,606 + CA264_14600 0.13 -0.2
3,432,607 - CA264_14600 0.13 +0.5
3,432,657 + CA264_14600 0.18 +1.5
3,432,723 + CA264_14600 0.23 -1.4
3,432,724 - CA264_14600 0.23 -0.6
3,432,771 + CA264_14600 0.27 +0.9
3,432,773 + CA264_14600 0.28 -0.2
3,432,773 + CA264_14600 0.28 -0.8
3,432,836 - CA264_14600 0.33 -1.0
3,432,909 + CA264_14600 0.39 +0.4
3,433,047 + CA264_14600 0.51 -1.2
3,433,084 - CA264_14600 0.55 -0.2
3,433,136 + CA264_14600 0.59 -0.3
3,433,136 + CA264_14600 0.59 -0.9
3,433,137 - CA264_14600 0.59 -0.2
3,433,376 + CA264_14600 0.80 +0.5
3,433,395 - CA264_14600 0.82 -0.0
3,433,405 - CA264_14600 0.82 +1.8
3,433,467 - CA264_14600 0.88 -0.0
3,433,483 + CA264_14600 0.89 -0.3
3,433,512 + -1.0
3,433,518 + -1.2
3,433,519 - +0.0
3,433,519 - -0.2
3,433,542 + -0.3
3,433,647 + -1.0
3,433,648 - -0.8
3,433,655 - -1.5
3,433,662 - -1.3
3,433,744 - -1.8
3,433,768 - +0.6
3,433,772 - -0.6
3,433,775 + +0.8
3,433,776 - -1.8
3,433,783 + -0.8
3,433,846 + +1.0
3,433,875 + +0.8
3,433,876 - -0.1
3,433,937 - -1.6
3,433,953 + CA264_14605 0.10 +0.8
3,433,953 + CA264_14605 0.10 -0.8
3,433,953 + CA264_14605 0.10 +0.8
3,433,954 - CA264_14605 0.10 +0.8
3,433,954 - CA264_14605 0.10 -1.3
3,433,958 + CA264_14605 0.10 -0.5
3,433,958 + CA264_14605 0.10 -0.7
3,434,131 + CA264_14605 0.16 +0.8
3,434,132 - CA264_14605 0.16 -0.8
3,434,189 + CA264_14605 0.18 -0.5
3,434,189 + CA264_14605 0.18 +0.6
3,434,190 - CA264_14605 0.18 -0.8
3,434,190 - CA264_14605 0.18 -0.8
3,434,204 + CA264_14605 0.18 +0.3
3,434,230 - CA264_14605 0.19 +0.1
3,434,230 - CA264_14605 0.19 -1.4
3,434,230 - CA264_14605 0.19 +0.8
3,434,280 - CA264_14605 0.21 -1.3
3,434,358 + CA264_14605 0.23 -0.7
3,434,424 + CA264_14605 0.25 +0.2
3,434,462 + CA264_14605 0.26 -0.5

Or see this region's nucleotide sequence