Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14195

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14185 and CA264_14190 are separated by 74 nucleotidesCA264_14190 and CA264_14195 are separated by 369 nucleotidesCA264_14195 and CA264_14200 are separated by 227 nucleotidesCA264_14200 and CA264_14205 are separated by 80 nucleotides CA264_14185: CA264_14185 - noncanonical pyrimidine nucleotidase, YjjG family, at 3,330,723 to 3,331,424 _14185 CA264_14190: CA264_14190 - hypothetical protein, at 3,331,499 to 3,331,918 _14190 CA264_14195: CA264_14195 - 1-pyrroline-5-carboxylate dehydrogenase, at 3,332,288 to 3,333,922 _14195 CA264_14200: CA264_14200 - NADH-quinone oxidoreductase subunit A, at 3,334,150 to 3,334,530 _14200 CA264_14205: CA264_14205 - NADH-quinone oxidoreductase subunit B, at 3,334,611 to 3,335,165 _14205 Position (kb) 3332 3333 3334Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3331.288 kb on - strand, within CA264_14185at 3331.299 kb on - strand, within CA264_14185at 3331.300 kb on + strand, within CA264_14185at 3331.301 kb on - strand, within CA264_14185at 3331.333 kb on + strand, within CA264_14185at 3331.383 kb on + strandat 3331.383 kb on + strandat 3331.408 kb on + strandat 3331.408 kb on + strandat 3331.409 kb on - strandat 3331.409 kb on - strandat 3331.465 kb on - strandat 3331.500 kb on + strandat 3331.501 kb on - strandat 3331.501 kb on - strandat 3331.555 kb on + strand, within CA264_14190at 3331.610 kb on - strand, within CA264_14190at 3331.718 kb on - strand, within CA264_14190at 3331.720 kb on - strand, within CA264_14190at 3331.747 kb on - strand, within CA264_14190at 3331.834 kb on + strand, within CA264_14190at 3331.834 kb on + strand, within CA264_14190at 3331.834 kb on + strand, within CA264_14190at 3331.896 kb on + strandat 3331.919 kb on - strandat 3331.970 kb on + strandat 3331.970 kb on + strandat 3331.971 kb on - strandat 3331.985 kb on + strandat 3332.006 kb on + strandat 3332.216 kb on + strandat 3332.216 kb on + strandat 3332.216 kb on + strandat 3332.216 kb on + strandat 3332.217 kb on - strandat 3332.217 kb on - strandat 3332.240 kb on - strandat 3332.245 kb on + strandat 3332.245 kb on + strandat 3332.246 kb on - strandat 3332.246 kb on - strandat 3332.275 kb on - strandat 3332.279 kb on - strandat 3332.279 kb on - strandat 3332.279 kb on - strandat 3332.279 kb on - strandat 3332.279 kb on - strandat 3332.279 kb on - strandat 3332.281 kb on - strandat 3332.285 kb on + strandat 3332.285 kb on + strandat 3332.310 kb on + strandat 3332.423 kb on + strandat 3332.423 kb on + strandat 3332.424 kb on - strandat 3332.424 kb on - strandat 3332.741 kb on - strand, within CA264_14195at 3332.750 kb on + strand, within CA264_14195at 3332.750 kb on + strand, within CA264_14195at 3332.751 kb on - strand, within CA264_14195at 3332.751 kb on - strand, within CA264_14195at 3332.765 kb on + strand, within CA264_14195at 3332.765 kb on + strand, within CA264_14195at 3332.999 kb on - strand, within CA264_14195at 3333.012 kb on - strand, within CA264_14195at 3333.012 kb on - strand, within CA264_14195at 3333.016 kb on - strand, within CA264_14195at 3333.026 kb on - strand, within CA264_14195at 3333.138 kb on - strand, within CA264_14195at 3333.139 kb on + strand, within CA264_14195at 3333.139 kb on + strand, within CA264_14195at 3333.159 kb on + strand, within CA264_14195at 3333.186 kb on + strand, within CA264_14195at 3333.186 kb on + strand, within CA264_14195at 3333.288 kb on - strand, within CA264_14195at 3333.349 kb on + strand, within CA264_14195at 3333.501 kb on - strand, within CA264_14195at 3333.543 kb on - strand, within CA264_14195at 3333.578 kb on - strand, within CA264_14195at 3333.587 kb on + strand, within CA264_14195at 3333.587 kb on + strand, within CA264_14195at 3333.587 kb on + strand, within CA264_14195at 3333.588 kb on - strand, within CA264_14195at 3333.695 kb on + strand, within CA264_14195at 3333.734 kb on + strand, within CA264_14195at 3333.735 kb on - strand, within CA264_14195at 3333.859 kb on + strandat 3333.859 kb on + strandat 3333.886 kb on - strandat 3333.923 kb on + strandat 3333.925 kb on + strandat 3333.926 kb on - strandat 3333.926 kb on - strandat 3333.946 kb on + strandat 3333.996 kb on + strandat 3334.072 kb on + strandat 3334.073 kb on - strandat 3334.073 kb on - strandat 3334.078 kb on + strandat 3334.078 kb on + strandat 3334.078 kb on + strandat 3334.078 kb on + strandat 3334.083 kb on + strandat 3334.084 kb on - strandat 3334.106 kb on + strandat 3334.106 kb on + strandat 3334.107 kb on - strandat 3334.107 kb on - strandat 3334.107 kb on - strandat 3334.107 kb on - strandat 3334.109 kb on - strandat 3334.164 kb on - strandat 3334.164 kb on - strandat 3334.176 kb on - strandat 3334.176 kb on - strandat 3334.176 kb on - strandat 3334.191 kb on - strand, within CA264_14200at 3334.517 kb on + strandat 3334.537 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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3,331,288 - CA264_14185 0.80 -0.3
3,331,299 - CA264_14185 0.82 -0.4
3,331,300 + CA264_14185 0.82 +0.5
3,331,301 - CA264_14185 0.82 +0.2
3,331,333 + CA264_14185 0.87 -0.3
3,331,383 + +1.6
3,331,383 + -0.0
3,331,408 + -0.9
3,331,408 + +0.8
3,331,409 - -0.2
3,331,409 - +0.8
3,331,465 - +0.9
3,331,500 + +0.1
3,331,501 - +0.6
3,331,501 - +0.0
3,331,555 + CA264_14190 0.13 +0.7
3,331,610 - CA264_14190 0.26 -0.1
3,331,718 - CA264_14190 0.52 -1.2
3,331,720 - CA264_14190 0.53 +1.4
3,331,747 - CA264_14190 0.59 +1.5
3,331,834 + CA264_14190 0.80 +0.7
3,331,834 + CA264_14190 0.80 +2.1
3,331,834 + CA264_14190 0.80 +1.5
3,331,896 + -0.6
3,331,919 - +1.5
3,331,970 + +0.5
3,331,970 + +0.2
3,331,971 - +0.8
3,331,985 + +0.8
3,332,006 + +1.0
3,332,216 + -0.2
3,332,216 + +0.4
3,332,216 + +0.9
3,332,216 + +0.9
3,332,217 - -0.5
3,332,217 - -0.1
3,332,240 - +0.3
3,332,245 + +0.4
3,332,245 + +0.4
3,332,246 - +1.5
3,332,246 - +0.6
3,332,275 - -1.8
3,332,279 - -0.3
3,332,279 - -0.9
3,332,279 - -2.9
3,332,279 - -0.9
3,332,279 - -0.2
3,332,279 - +0.1
3,332,281 - -0.3
3,332,285 + -0.7
3,332,285 + +0.8
3,332,310 + -0.2
3,332,423 + -0.8
3,332,423 + -0.7
3,332,424 - -0.4
3,332,424 - -0.4
3,332,741 - CA264_14195 0.28 -0.9
3,332,750 + CA264_14195 0.28 -0.7
3,332,750 + CA264_14195 0.28 -0.8
3,332,751 - CA264_14195 0.28 +1.4
3,332,751 - CA264_14195 0.28 -0.4
3,332,765 + CA264_14195 0.29 -0.6
3,332,765 + CA264_14195 0.29 +0.8
3,332,999 - CA264_14195 0.43 -0.9
3,333,012 - CA264_14195 0.44 +0.2
3,333,012 - CA264_14195 0.44 -0.2
3,333,016 - CA264_14195 0.45 -0.4
3,333,026 - CA264_14195 0.45 -1.2
3,333,138 - CA264_14195 0.52 -1.0
3,333,139 + CA264_14195 0.52 -0.7
3,333,139 + CA264_14195 0.52 -1.9
3,333,159 + CA264_14195 0.53 -0.7
3,333,186 + CA264_14195 0.55 +0.1
3,333,186 + CA264_14195 0.55 -1.6
3,333,288 - CA264_14195 0.61 +0.2
3,333,349 + CA264_14195 0.65 -1.2
3,333,501 - CA264_14195 0.74 -1.5
3,333,543 - CA264_14195 0.77 -0.4
3,333,578 - CA264_14195 0.79 -0.1
3,333,587 + CA264_14195 0.79 -0.8
3,333,587 + CA264_14195 0.79 -0.8
3,333,587 + CA264_14195 0.79 -1.8
3,333,588 - CA264_14195 0.80 -1.4
3,333,695 + CA264_14195 0.86 -0.3
3,333,734 + CA264_14195 0.88 +0.2
3,333,735 - CA264_14195 0.89 -0.4
3,333,859 + -1.3
3,333,859 + +1.8
3,333,886 - -0.8
3,333,923 + -0.0
3,333,925 + +0.5
3,333,926 - -0.8
3,333,926 - -0.7
3,333,946 + +0.4
3,333,996 + +0.1
3,334,072 + -0.5
3,334,073 - +0.2
3,334,073 - -0.6
3,334,078 + +0.8
3,334,078 + -0.2
3,334,078 + +0.8
3,334,078 + -0.3
3,334,083 + +0.1
3,334,084 - -0.4
3,334,106 + +0.1
3,334,106 + +0.9
3,334,107 - -1.8
3,334,107 - -1.5
3,334,107 - -1.3
3,334,107 - -0.5
3,334,109 - +0.1
3,334,164 - -0.3
3,334,164 - +0.3
3,334,176 - -0.7
3,334,176 - +0.1
3,334,176 - -0.2
3,334,191 - CA264_14200 0.11 +0.8
3,334,517 + +2.3
3,334,537 - +1.8

Or see this region's nucleotide sequence