Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14060 and CA264_14065 are separated by 202 nucleotides CA264_14065 and CA264_14070 are separated by 200 nucleotides
CA264_14060: CA264_14060 - ATP-binding protein, at 3,295,051 to 3,296,409
_14060
CA264_14065: CA264_14065 - cyclopropane-fatty-acyl-phospholipid synthase, at 3,296,612 to 3,297,733
_14065
CA264_14070: CA264_14070 - catalase, at 3,297,934 to 3,299,571
_14070
Position (kb)
3296
3297
3298 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3295.620 kb on - strand, within CA264_14060 at 3295.620 kb on - strand, within CA264_14060 at 3295.685 kb on + strand, within CA264_14060 at 3295.984 kb on + strand, within CA264_14060 at 3296.002 kb on - strand, within CA264_14060 at 3296.008 kb on - strand, within CA264_14060 at 3296.067 kb on - strand, within CA264_14060 at 3296.178 kb on + strand, within CA264_14060 at 3296.180 kb on + strand, within CA264_14060 at 3296.229 kb on + strand, within CA264_14060 at 3296.334 kb on + strand at 3296.335 kb on - strand at 3296.357 kb on + strand at 3296.357 kb on + strand at 3296.357 kb on + strand at 3296.358 kb on - strand at 3296.358 kb on - strand at 3296.358 kb on - strand at 3296.364 kb on - strand at 3296.364 kb on - strand at 3296.394 kb on + strand at 3296.561 kb on + strand at 3296.562 kb on - strand at 3296.562 kb on - strand at 3296.563 kb on + strand at 3296.563 kb on + strand at 3296.569 kb on + strand at 3296.569 kb on + strand at 3296.569 kb on + strand at 3296.570 kb on - strand at 3296.580 kb on - strand at 3296.592 kb on + strand at 3296.592 kb on + strand at 3296.629 kb on - strand at 3296.721 kb on - strand at 3296.722 kb on + strand at 3296.723 kb on - strand at 3296.734 kb on - strand, within CA264_14065 at 3296.834 kb on + strand, within CA264_14065 at 3296.834 kb on + strand, within CA264_14065 at 3296.834 kb on + strand, within CA264_14065 at 3296.967 kb on + strand, within CA264_14065 at 3296.968 kb on - strand, within CA264_14065 at 3296.991 kb on - strand, within CA264_14065 at 3297.069 kb on + strand, within CA264_14065 at 3297.162 kb on + strand, within CA264_14065 at 3297.162 kb on + strand, within CA264_14065 at 3297.189 kb on + strand, within CA264_14065 at 3297.189 kb on + strand, within CA264_14065 at 3297.396 kb on - strand, within CA264_14065 at 3297.431 kb on + strand, within CA264_14065 at 3297.431 kb on + strand, within CA264_14065 at 3297.432 kb on - strand, within CA264_14065 at 3297.629 kb on + strand at 3297.800 kb on + strand at 3297.859 kb on - strand at 3297.882 kb on + strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.884 kb on + strand at 3297.884 kb on + strand at 3297.890 kb on + strand at 3297.897 kb on + strand at 3297.897 kb on + strand at 3297.898 kb on - strand at 3297.898 kb on - strand at 3297.898 kb on - strand at 3297.898 kb on - strand at 3297.905 kb on + strand at 3297.909 kb on + strand at 3297.910 kb on - strand at 3298.343 kb on - strand, within CA264_14070 at 3298.383 kb on + strand, within CA264_14070 at 3298.384 kb on - strand, within CA264_14070 at 3298.559 kb on - strand, within CA264_14070 at 3298.591 kb on + strand, within CA264_14070 at 3298.592 kb on - strand, within CA264_14070 at 3298.593 kb on + strand, within CA264_14070 at 3298.594 kb on - strand, within CA264_14070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 3,295,620 - CA264_14060 0.42 -0.1 3,295,620 - CA264_14060 0.42 -0.4 3,295,685 + CA264_14060 0.47 -1.7 3,295,984 + CA264_14060 0.69 -0.2 3,296,002 - CA264_14060 0.70 +0.5 3,296,008 - CA264_14060 0.70 +0.2 3,296,067 - CA264_14060 0.75 +0.8 3,296,178 + CA264_14060 0.83 -0.2 3,296,180 + CA264_14060 0.83 +0.6 3,296,229 + CA264_14060 0.87 -1.4 3,296,334 + -0.7 3,296,335 - +1.4 3,296,357 + -1.3 3,296,357 + +0.3 3,296,357 + +0.8 3,296,358 - -0.0 3,296,358 - +0.3 3,296,358 - -1.3 3,296,364 - -0.4 3,296,364 - +0.2 3,296,394 + +0.2 3,296,561 + -0.2 3,296,562 - -0.1 3,296,562 - +0.1 3,296,563 + +0.1 3,296,563 + -0.1 3,296,569 + +0.3 3,296,569 + -0.1 3,296,569 + +0.1 3,296,570 - -0.2 3,296,580 - -1.0 3,296,592 + -1.5 3,296,592 + +0.5 3,296,629 - -0.3 3,296,721 - -0.3 3,296,722 + -0.4 3,296,723 - +0.2 3,296,734 - CA264_14065 0.11 +0.3 3,296,834 + CA264_14065 0.20 -0.4 3,296,834 + CA264_14065 0.20 -1.3 3,296,834 + CA264_14065 0.20 -0.2 3,296,967 + CA264_14065 0.32 -0.9 3,296,968 - CA264_14065 0.32 -1.8 3,296,991 - CA264_14065 0.34 +0.5 3,297,069 + CA264_14065 0.41 -1.0 3,297,162 + CA264_14065 0.49 +1.1 3,297,162 + CA264_14065 0.49 +0.7 3,297,189 + CA264_14065 0.51 +1.0 3,297,189 + CA264_14065 0.51 -0.5 3,297,396 - CA264_14065 0.70 +0.4 3,297,431 + CA264_14065 0.73 -0.6 3,297,431 + CA264_14065 0.73 -0.6 3,297,432 - CA264_14065 0.73 +1.3 3,297,629 + -0.3 3,297,800 + -0.4 3,297,859 - +0.1 3,297,882 + -0.7 3,297,883 - +0.9 3,297,883 - +0.0 3,297,883 - -1.2 3,297,883 - +0.7 3,297,883 - -0.9 3,297,883 - -0.2 3,297,883 - +0.6 3,297,883 - +0.4 3,297,884 + -0.1 3,297,884 + +0.3 3,297,890 + +2.1 3,297,897 + +0.1 3,297,897 + +0.8 3,297,898 - +0.4 3,297,898 - +0.8 3,297,898 - +0.8 3,297,898 - -0.1 3,297,905 + -0.0 3,297,909 + +0.6 3,297,910 - -0.1 3,298,343 - CA264_14070 0.25 -0.9 3,298,383 + CA264_14070 0.27 +0.1 3,298,384 - CA264_14070 0.27 -0.1 3,298,559 - CA264_14070 0.38 +0.4 3,298,591 + CA264_14070 0.40 -1.9 3,298,592 - CA264_14070 0.40 -1.7 3,298,593 + CA264_14070 0.40 -0.4 3,298,594 - CA264_14070 0.40 -0.1
Or see this region's nucleotide sequence