Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13190 and CA264_13195 are separated by 413 nucleotides CA264_13195 and CA264_13200 are separated by 268 nucleotides
CA264_13190: CA264_13190 - hypothetical protein, at 3,073,243 to 3,076,728
_13190
CA264_13195: CA264_13195 - hypothetical protein, at 3,077,142 to 3,078,170
_13195
CA264_13200: CA264_13200 - lysine--tRNA ligase, at 3,078,439 to 3,079,983
_13200
Position (kb)
3077
3078
3079 Strain fitness (log2 ratio)
-2
-1
0
1 at 3076.150 kb on - strand, within CA264_13190 at 3076.175 kb on + strand, within CA264_13190 at 3076.180 kb on + strand, within CA264_13190 at 3076.181 kb on - strand, within CA264_13190 at 3076.197 kb on + strand, within CA264_13190 at 3076.198 kb on - strand, within CA264_13190 at 3076.198 kb on - strand, within CA264_13190 at 3076.198 kb on - strand, within CA264_13190 at 3076.303 kb on - strand, within CA264_13190 at 3076.347 kb on + strand, within CA264_13190 at 3076.363 kb on - strand, within CA264_13190 at 3076.380 kb on + strand at 3076.424 kb on + strand at 3076.425 kb on - strand at 3076.425 kb on - strand at 3076.425 kb on - strand at 3076.425 kb on - strand at 3076.429 kb on + strand at 3076.430 kb on - strand at 3076.496 kb on + strand at 3076.499 kb on - strand at 3076.503 kb on + strand at 3076.504 kb on - strand at 3076.604 kb on - strand at 3076.604 kb on - strand at 3076.640 kb on + strand at 3076.640 kb on + strand at 3076.722 kb on + strand at 3076.789 kb on - strand at 3076.794 kb on + strand at 3076.794 kb on + strand at 3076.794 kb on + strand at 3076.795 kb on - strand at 3076.817 kb on - strand at 3076.864 kb on - strand at 3076.877 kb on - strand at 3076.878 kb on + strand at 3076.878 kb on + strand at 3076.879 kb on - strand at 3076.880 kb on + strand at 3076.880 kb on + strand at 3076.893 kb on - strand at 3076.933 kb on + strand at 3077.141 kb on + strand at 3077.248 kb on - strand, within CA264_13195 at 3077.272 kb on + strand, within CA264_13195 at 3077.272 kb on + strand, within CA264_13195 at 3077.273 kb on - strand, within CA264_13195 at 3077.279 kb on + strand, within CA264_13195 at 3077.279 kb on + strand, within CA264_13195 at 3077.359 kb on + strand, within CA264_13195 at 3077.434 kb on - strand, within CA264_13195 at 3077.472 kb on + strand, within CA264_13195 at 3077.473 kb on - strand, within CA264_13195 at 3077.473 kb on - strand, within CA264_13195 at 3077.473 kb on - strand, within CA264_13195 at 3077.475 kb on + strand, within CA264_13195 at 3077.476 kb on - strand, within CA264_13195 at 3077.583 kb on + strand, within CA264_13195 at 3077.584 kb on - strand, within CA264_13195 at 3077.620 kb on - strand, within CA264_13195 at 3077.658 kb on + strand, within CA264_13195 at 3077.659 kb on - strand, within CA264_13195 at 3077.816 kb on - strand, within CA264_13195 at 3077.868 kb on - strand, within CA264_13195 at 3077.871 kb on - strand, within CA264_13195 at 3077.939 kb on - strand, within CA264_13195 at 3077.958 kb on - strand, within CA264_13195 at 3077.995 kb on - strand, within CA264_13195 at 3078.018 kb on + strand, within CA264_13195 at 3078.019 kb on - strand, within CA264_13195 at 3078.103 kb on + strand at 3078.103 kb on + strand at 3078.123 kb on - strand at 3078.169 kb on - strand at 3078.253 kb on + strand at 3078.253 kb on + strand at 3078.270 kb on - strand at 3078.274 kb on + strand at 3078.386 kb on + strand at 3078.410 kb on - strand at 3078.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 3,076,150 - CA264_13190 0.83 -0.7 3,076,175 + CA264_13190 0.84 -0.4 3,076,180 + CA264_13190 0.84 -0.5 3,076,181 - CA264_13190 0.84 -0.2 3,076,197 + CA264_13190 0.85 -1.3 3,076,198 - CA264_13190 0.85 +0.8 3,076,198 - CA264_13190 0.85 +0.8 3,076,198 - CA264_13190 0.85 -1.3 3,076,303 - CA264_13190 0.88 +0.8 3,076,347 + CA264_13190 0.89 +0.0 3,076,363 - CA264_13190 0.90 -0.9 3,076,380 + -1.0 3,076,424 + +1.1 3,076,425 - +0.8 3,076,425 - -0.4 3,076,425 - +0.2 3,076,425 - -0.2 3,076,429 + -0.8 3,076,430 - -0.2 3,076,496 + -0.4 3,076,499 - -0.4 3,076,503 + -0.6 3,076,504 - +0.2 3,076,604 - +0.5 3,076,604 - -0.5 3,076,640 + -0.3 3,076,640 + +0.8 3,076,722 + -0.8 3,076,789 - -1.2 3,076,794 + +0.0 3,076,794 + -0.5 3,076,794 + -0.2 3,076,795 - -1.6 3,076,817 - +0.7 3,076,864 - -0.5 3,076,877 - +0.1 3,076,878 + +0.1 3,076,878 + -0.8 3,076,879 - +0.3 3,076,880 + +1.0 3,076,880 + -0.1 3,076,893 - -0.2 3,076,933 + -0.6 3,077,141 + +0.9 3,077,248 - CA264_13195 0.10 +0.1 3,077,272 + CA264_13195 0.13 +1.5 3,077,272 + CA264_13195 0.13 +1.1 3,077,273 - CA264_13195 0.13 -0.1 3,077,279 + CA264_13195 0.13 +0.8 3,077,279 + CA264_13195 0.13 -0.4 3,077,359 + CA264_13195 0.21 -0.0 3,077,434 - CA264_13195 0.28 -2.0 3,077,472 + CA264_13195 0.32 -0.6 3,077,473 - CA264_13195 0.32 +0.2 3,077,473 - CA264_13195 0.32 +0.2 3,077,473 - CA264_13195 0.32 +0.5 3,077,475 + CA264_13195 0.32 -0.2 3,077,476 - CA264_13195 0.32 -1.8 3,077,583 + CA264_13195 0.43 -0.4 3,077,584 - CA264_13195 0.43 -0.6 3,077,620 - CA264_13195 0.46 +0.4 3,077,658 + CA264_13195 0.50 +0.2 3,077,659 - CA264_13195 0.50 +0.5 3,077,816 - CA264_13195 0.66 -0.3 3,077,868 - CA264_13195 0.71 -0.6 3,077,871 - CA264_13195 0.71 -1.1 3,077,939 - CA264_13195 0.77 +0.2 3,077,958 - CA264_13195 0.79 -0.5 3,077,995 - CA264_13195 0.83 -2.4 3,078,018 + CA264_13195 0.85 -0.3 3,078,019 - CA264_13195 0.85 +0.4 3,078,103 + -0.9 3,078,103 + -0.3 3,078,123 - -0.4 3,078,169 - -0.5 3,078,253 + +0.4 3,078,253 + -0.4 3,078,270 - -1.8 3,078,274 + +0.4 3,078,386 + -0.5 3,078,410 - +0.8 3,078,447 - +1.1
Or see this region's nucleotide sequence