Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11465

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11460 and CA264_11465 are separated by 455 nucleotidesCA264_11465 and CA264_11470 are separated by 300 nucleotides CA264_11460: CA264_11460 - SusC/RagA family TonB-linked outer membrane protein, at 2,657,787 to 2,660,840 _11460 CA264_11465: CA264_11465 - transcriptional regulator, at 2,661,296 to 2,662,060 _11465 CA264_11470: CA264_11470 - peptidase M16, at 2,662,361 to 2,665,198 _11470 Position (kb) 2661 2662 2663Strain fitness (log2 ratio) -2 -1 0 1 2at 2660.330 kb on + strand, within CA264_11460at 2660.330 kb on + strand, within CA264_11460at 2660.346 kb on + strand, within CA264_11460at 2660.406 kb on - strand, within CA264_11460at 2660.412 kb on + strand, within CA264_11460at 2660.435 kb on + strand, within CA264_11460at 2660.436 kb on - strand, within CA264_11460at 2660.589 kb on + strandat 2660.611 kb on - strandat 2660.631 kb on - strandat 2660.657 kb on + strandat 2660.657 kb on + strandat 2660.657 kb on + strandat 2660.657 kb on + strandat 2660.658 kb on - strandat 2660.659 kb on + strandat 2660.660 kb on - strandat 2660.681 kb on + strandat 2660.682 kb on - strandat 2660.770 kb on - strandat 2660.823 kb on - strandat 2660.825 kb on - strandat 2660.825 kb on - strandat 2660.836 kb on - strandat 2660.836 kb on - strandat 2660.841 kb on - strandat 2660.846 kb on - strandat 2660.846 kb on - strandat 2660.916 kb on + strandat 2660.917 kb on - strandat 2661.142 kb on - strandat 2661.147 kb on + strandat 2661.148 kb on - strandat 2661.154 kb on + strandat 2661.158 kb on - strandat 2661.160 kb on + strandat 2661.279 kb on + strandat 2661.301 kb on + strandat 2661.369 kb on + strandat 2661.414 kb on + strand, within CA264_11465at 2661.479 kb on + strand, within CA264_11465at 2661.496 kb on + strand, within CA264_11465at 2661.586 kb on + strand, within CA264_11465at 2661.634 kb on + strand, within CA264_11465at 2661.726 kb on + strand, within CA264_11465at 2661.727 kb on - strand, within CA264_11465at 2661.772 kb on + strand, within CA264_11465at 2661.773 kb on - strand, within CA264_11465at 2661.778 kb on - strand, within CA264_11465at 2661.844 kb on + strand, within CA264_11465at 2661.844 kb on + strand, within CA264_11465at 2661.844 kb on + strand, within CA264_11465at 2661.870 kb on + strand, within CA264_11465at 2661.955 kb on - strand, within CA264_11465at 2661.977 kb on + strand, within CA264_11465at 2661.977 kb on + strand, within CA264_11465at 2661.977 kb on + strand, within CA264_11465at 2662.024 kb on - strandat 2662.051 kb on - strandat 2662.099 kb on + strandat 2662.187 kb on + strandat 2662.187 kb on + strandat 2662.193 kb on + strandat 2662.211 kb on - strandat 2662.211 kb on - strandat 2662.216 kb on + strandat 2662.219 kb on + strandat 2662.219 kb on + strandat 2662.219 kb on + strandat 2662.242 kb on - strandat 2662.242 kb on - strandat 2662.281 kb on + strandat 2662.299 kb on + strandat 2662.317 kb on - strandat 2662.326 kb on - strandat 2662.330 kb on + strandat 2662.331 kb on - strandat 2662.363 kb on - strandat 2662.416 kb on - strandat 2662.419 kb on + strandat 2662.419 kb on + strandat 2662.423 kb on + strandat 2662.424 kb on - strandat 2662.424 kb on - strandat 2662.424 kb on - strandat 2662.475 kb on - strandat 2662.508 kb on - strandat 2662.527 kb on + strandat 2662.711 kb on - strand, within CA264_11470at 2662.714 kb on + strand, within CA264_11470at 2662.838 kb on - strand, within CA264_11470at 2662.852 kb on - strand, within CA264_11470at 2662.869 kb on + strand, within CA264_11470at 2662.891 kb on + strand, within CA264_11470at 2662.892 kb on - strand, within CA264_11470at 2662.943 kb on + strand, within CA264_11470at 2662.950 kb on - strand, within CA264_11470at 2662.957 kb on + strand, within CA264_11470at 2662.957 kb on + strand, within CA264_11470at 2662.957 kb on + strand, within CA264_11470at 2662.958 kb on - strand, within CA264_11470at 2662.999 kb on - strand, within CA264_11470at 2663.010 kb on - strand, within CA264_11470

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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2,660,330 + CA264_11460 0.83 -0.7
2,660,330 + CA264_11460 0.83 -0.7
2,660,346 + CA264_11460 0.84 -0.1
2,660,406 - CA264_11460 0.86 +0.5
2,660,412 + CA264_11460 0.86 -0.8
2,660,435 + CA264_11460 0.87 -1.3
2,660,436 - CA264_11460 0.87 +1.7
2,660,589 + -0.1
2,660,611 - +0.1
2,660,631 - -1.8
2,660,657 + -1.4
2,660,657 + -1.1
2,660,657 + -0.9
2,660,657 + +0.4
2,660,658 - -0.0
2,660,659 + -1.1
2,660,660 - -0.3
2,660,681 + -0.9
2,660,682 - +0.2
2,660,770 - +0.2
2,660,823 - +0.3
2,660,825 - -0.4
2,660,825 - +0.1
2,660,836 - +0.7
2,660,836 - +0.4
2,660,841 - -1.0
2,660,846 - +0.5
2,660,846 - -0.8
2,660,916 + -1.7
2,660,917 - -0.6
2,661,142 - -0.2
2,661,147 + -1.4
2,661,148 - -0.3
2,661,154 + -0.8
2,661,158 - +2.1
2,661,160 + -0.1
2,661,279 + -0.7
2,661,301 + -0.4
2,661,369 + -0.4
2,661,414 + CA264_11465 0.15 +1.0
2,661,479 + CA264_11465 0.24 -0.3
2,661,496 + CA264_11465 0.26 -0.8
2,661,586 + CA264_11465 0.38 +1.2
2,661,634 + CA264_11465 0.44 +0.1
2,661,726 + CA264_11465 0.56 -0.0
2,661,727 - CA264_11465 0.56 -0.1
2,661,772 + CA264_11465 0.62 -1.5
2,661,773 - CA264_11465 0.62 -0.3
2,661,778 - CA264_11465 0.63 +0.3
2,661,844 + CA264_11465 0.72 -0.3
2,661,844 + CA264_11465 0.72 -2.1
2,661,844 + CA264_11465 0.72 +0.3
2,661,870 + CA264_11465 0.75 +0.2
2,661,955 - CA264_11465 0.86 -0.1
2,661,977 + CA264_11465 0.89 +1.1
2,661,977 + CA264_11465 0.89 -0.6
2,661,977 + CA264_11465 0.89 +0.0
2,662,024 - -0.8
2,662,051 - -1.1
2,662,099 + -0.0
2,662,187 + +0.5
2,662,187 + +0.2
2,662,193 + +0.4
2,662,211 - -0.1
2,662,211 - +0.7
2,662,216 + -0.5
2,662,219 + +0.2
2,662,219 + -0.7
2,662,219 + +0.0
2,662,242 - +0.4
2,662,242 - -0.6
2,662,281 + +0.0
2,662,299 + +0.3
2,662,317 - -1.3
2,662,326 - -0.8
2,662,330 + -0.7
2,662,331 - -0.2
2,662,363 - -0.9
2,662,416 - +0.1
2,662,419 + -0.1
2,662,419 + -0.4
2,662,423 + -0.2
2,662,424 - -0.8
2,662,424 - +2.3
2,662,424 - +0.4
2,662,475 - +0.7
2,662,508 - -0.8
2,662,527 + -0.8
2,662,711 - CA264_11470 0.12 -0.3
2,662,714 + CA264_11470 0.12 -1.1
2,662,838 - CA264_11470 0.17 -1.6
2,662,852 - CA264_11470 0.17 -0.4
2,662,869 + CA264_11470 0.18 -0.5
2,662,891 + CA264_11470 0.19 +2.0
2,662,892 - CA264_11470 0.19 -0.3
2,662,943 + CA264_11470 0.21 +2.3
2,662,950 - CA264_11470 0.21 +0.7
2,662,957 + CA264_11470 0.21 -1.1
2,662,957 + CA264_11470 0.21 +0.2
2,662,957 + CA264_11470 0.21 +0.3
2,662,958 - CA264_11470 0.21 -0.0
2,662,999 - CA264_11470 0.22 +0.2
2,663,010 - CA264_11470 0.23 -0.2

Or see this region's nucleotide sequence