Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10485

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10480 and CA264_10485 are separated by 86 nucleotidesCA264_10485 and CA264_10490 are separated by 286 nucleotidesCA264_10490 and CA264_10495 overlap by 4 nucleotides CA264_10480: CA264_10480 - AI-2E family transporter, at 2,430,230 to 2,431,405 _10480 CA264_10485: CA264_10485 - lipoprotein-releasing system ATP-binding protein LolD, at 2,431,492 to 2,432,145 _10485 CA264_10490: CA264_10490 - MobA-like protein, at 2,432,432 to 2,433,016 _10490 CA264_10495: CA264_10495 - alanine dehydrogenase, at 2,433,013 to 2,434,203 _10495 Position (kb) 2431 2432 2433Strain fitness (log2 ratio) -2 -1 0 1 2at 2430.733 kb on + strand, within CA264_10480at 2430.734 kb on - strand, within CA264_10480at 2430.845 kb on + strand, within CA264_10480at 2430.845 kb on + strand, within CA264_10480at 2430.845 kb on + strand, within CA264_10480at 2430.845 kb on + strand, within CA264_10480at 2430.845 kb on + strand, within CA264_10480at 2430.845 kb on + strand, within CA264_10480at 2430.846 kb on - strand, within CA264_10480at 2430.846 kb on - strand, within CA264_10480at 2430.846 kb on - strand, within CA264_10480at 2430.850 kb on + strand, within CA264_10480at 2430.871 kb on - strand, within CA264_10480at 2430.914 kb on - strand, within CA264_10480at 2430.922 kb on + strand, within CA264_10480at 2430.930 kb on + strand, within CA264_10480at 2430.947 kb on + strand, within CA264_10480at 2431.075 kb on - strand, within CA264_10480at 2431.076 kb on + strand, within CA264_10480at 2431.077 kb on - strand, within CA264_10480at 2431.095 kb on + strand, within CA264_10480at 2431.096 kb on - strand, within CA264_10480at 2431.096 kb on - strand, within CA264_10480at 2431.103 kb on + strand, within CA264_10480at 2431.103 kb on + strand, within CA264_10480at 2431.111 kb on + strand, within CA264_10480at 2431.200 kb on + strand, within CA264_10480at 2431.415 kb on + strandat 2431.415 kb on + strandat 2431.416 kb on - strandat 2431.421 kb on + strandat 2431.422 kb on - strandat 2431.469 kb on + strandat 2431.470 kb on - strandat 2431.470 kb on - strandat 2431.471 kb on + strandat 2431.472 kb on - strandat 2431.477 kb on - strandat 2432.144 kb on - strandat 2432.156 kb on - strandat 2432.164 kb on - strandat 2432.171 kb on + strandat 2432.171 kb on + strandat 2432.177 kb on + strandat 2432.177 kb on + strandat 2432.177 kb on + strandat 2432.178 kb on - strandat 2432.178 kb on - strandat 2432.202 kb on + strandat 2432.223 kb on - strandat 2432.223 kb on - strandat 2432.236 kb on + strandat 2432.236 kb on + strandat 2432.237 kb on - strandat 2432.251 kb on - strandat 2432.256 kb on + strandat 2432.256 kb on + strandat 2432.256 kb on + strandat 2432.256 kb on + strandat 2432.256 kb on + strandat 2432.257 kb on - strandat 2432.266 kb on + strandat 2432.267 kb on - strandat 2432.269 kb on - strandat 2432.269 kb on - strandat 2432.312 kb on - strandat 2432.314 kb on - strandat 2432.374 kb on - strandat 2432.377 kb on + strandat 2432.377 kb on + strandat 2432.377 kb on + strandat 2432.378 kb on - strandat 2432.378 kb on - strandat 2432.378 kb on - strandat 2432.378 kb on - strandat 2432.378 kb on - strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.380 kb on - strandat 2432.380 kb on - strandat 2432.380 kb on - strandat 2432.380 kb on - strandat 2432.380 kb on - strandat 2432.429 kb on - strandat 2432.434 kb on - strandat 2432.458 kb on + strandat 2432.477 kb on + strandat 2432.477 kb on + strandat 2432.478 kb on - strandat 2432.594 kb on - strand, within CA264_10490at 2432.695 kb on + strand, within CA264_10490at 2432.698 kb on - strand, within CA264_10490at 2432.757 kb on + strand, within CA264_10490at 2432.822 kb on + strand, within CA264_10490at 2432.841 kb on + strand, within CA264_10490at 2432.842 kb on - strand, within CA264_10490at 2432.916 kb on - strand, within CA264_10490at 2432.951 kb on + strand, within CA264_10490at 2432.951 kb on + strand, within CA264_10490at 2432.952 kb on - strand, within CA264_10490at 2433.016 kb on + strandat 2433.091 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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2,430,733 + CA264_10480 0.43 +1.5
2,430,734 - CA264_10480 0.43 -0.0
2,430,845 + CA264_10480 0.52 -0.7
2,430,845 + CA264_10480 0.52 -0.1
2,430,845 + CA264_10480 0.52 -0.2
2,430,845 + CA264_10480 0.52 -0.3
2,430,845 + CA264_10480 0.52 -0.1
2,430,845 + CA264_10480 0.52 -0.2
2,430,846 - CA264_10480 0.52 +1.7
2,430,846 - CA264_10480 0.52 +1.3
2,430,846 - CA264_10480 0.52 +1.7
2,430,850 + CA264_10480 0.53 -0.9
2,430,871 - CA264_10480 0.55 -0.2
2,430,914 - CA264_10480 0.58 +0.3
2,430,922 + CA264_10480 0.59 +0.4
2,430,930 + CA264_10480 0.60 +0.2
2,430,947 + CA264_10480 0.61 -0.1
2,431,075 - CA264_10480 0.72 -2.2
2,431,076 + CA264_10480 0.72 -0.3
2,431,077 - CA264_10480 0.72 +1.2
2,431,095 + CA264_10480 0.74 -0.4
2,431,096 - CA264_10480 0.74 -0.2
2,431,096 - CA264_10480 0.74 -0.8
2,431,103 + CA264_10480 0.74 -0.9
2,431,103 + CA264_10480 0.74 +0.7
2,431,111 + CA264_10480 0.75 -0.5
2,431,200 + CA264_10480 0.82 -2.3
2,431,415 + -0.5
2,431,415 + -0.1
2,431,416 - -1.3
2,431,421 + -0.8
2,431,422 - -0.1
2,431,469 + +1.0
2,431,470 - -0.9
2,431,470 - +1.1
2,431,471 + -0.7
2,431,472 - -0.3
2,431,477 - +1.9
2,432,144 - +0.8
2,432,156 - -0.9
2,432,164 - +1.5
2,432,171 + -1.0
2,432,171 + +1.7
2,432,177 + +1.1
2,432,177 + -0.0
2,432,177 + -2.0
2,432,178 - -0.9
2,432,178 - +0.1
2,432,202 + +0.7
2,432,223 - +1.3
2,432,223 - +0.5
2,432,236 + -0.3
2,432,236 + -1.2
2,432,237 - -0.3
2,432,251 - -0.2
2,432,256 + -1.3
2,432,256 + -0.2
2,432,256 + -0.3
2,432,256 + +0.3
2,432,256 + -0.6
2,432,257 - -0.6
2,432,266 + +0.7
2,432,267 - +0.1
2,432,269 - +0.7
2,432,269 - -0.8
2,432,312 - +0.4
2,432,314 - -0.5
2,432,374 - +0.6
2,432,377 + -1.0
2,432,377 + -0.9
2,432,377 + -0.7
2,432,378 - -0.4
2,432,378 - +0.3
2,432,378 - +0.1
2,432,378 - +0.7
2,432,378 - +1.3
2,432,379 + -0.5
2,432,379 + +0.7
2,432,379 + +1.5
2,432,379 + -0.1
2,432,379 + +0.3
2,432,379 + -0.1
2,432,379 + -0.3
2,432,379 + -0.6
2,432,379 + -0.3
2,432,379 + -0.4
2,432,379 + +0.6
2,432,380 - -0.9
2,432,380 - -1.3
2,432,380 - -0.9
2,432,380 - +0.2
2,432,380 - -0.1
2,432,429 - +0.1
2,432,434 - -0.3
2,432,458 + +0.1
2,432,477 + +1.0
2,432,477 + -0.9
2,432,478 - +1.7
2,432,594 - CA264_10490 0.28 +0.5
2,432,695 + CA264_10490 0.45 -0.4
2,432,698 - CA264_10490 0.45 +0.7
2,432,757 + CA264_10490 0.56 -0.6
2,432,822 + CA264_10490 0.67 +0.7
2,432,841 + CA264_10490 0.70 -0.1
2,432,842 - CA264_10490 0.70 +0.7
2,432,916 - CA264_10490 0.83 +1.3
2,432,951 + CA264_10490 0.89 -0.4
2,432,951 + CA264_10490 0.89 -1.2
2,432,952 - CA264_10490 0.89 -0.4
2,433,016 + -0.6
2,433,091 + -0.4

Or see this region's nucleotide sequence