Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09905 and CA264_09910 are separated by 191 nucleotides CA264_09910 and CA264_09915 are separated by 342 nucleotides CA264_09915 and CA264_09920 overlap by 139 nucleotides
CA264_09905: CA264_09905 - hypothetical protein, at 2,309,582 to 2,310,607
_09905
CA264_09910: CA264_09910 - hypothetical protein, at 2,310,799 to 2,311,374
_09910
CA264_09915: CA264_09915 - hypothetical protein, at 2,311,717 to 2,311,902
_09915
CA264_09920: CA264_09920 - IS5/IS1182 family transposase, at 2,311,764 to 2,312,237
_09920
Position (kb)
2310
2311
2312 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2309.810 kb on + strand, within CA264_09905 at 2309.890 kb on + strand, within CA264_09905 at 2309.891 kb on - strand, within CA264_09905 at 2309.891 kb on - strand, within CA264_09905 at 2309.891 kb on - strand, within CA264_09905 at 2309.917 kb on + strand, within CA264_09905 at 2310.036 kb on - strand, within CA264_09905 at 2310.036 kb on - strand, within CA264_09905 at 2310.039 kb on - strand, within CA264_09905 at 2310.039 kb on - strand, within CA264_09905 at 2310.039 kb on - strand, within CA264_09905 at 2310.085 kb on + strand, within CA264_09905 at 2310.085 kb on + strand, within CA264_09905 at 2310.096 kb on - strand, within CA264_09905 at 2310.159 kb on + strand, within CA264_09905 at 2310.159 kb on + strand, within CA264_09905 at 2310.160 kb on - strand, within CA264_09905 at 2310.160 kb on - strand, within CA264_09905 at 2310.160 kb on - strand, within CA264_09905 at 2310.172 kb on + strand, within CA264_09905 at 2310.188 kb on + strand, within CA264_09905 at 2310.234 kb on - strand, within CA264_09905 at 2310.317 kb on + strand, within CA264_09905 at 2310.318 kb on - strand, within CA264_09905 at 2310.318 kb on - strand, within CA264_09905 at 2310.330 kb on - strand, within CA264_09905 at 2310.587 kb on + strand at 2310.587 kb on + strand at 2310.588 kb on - strand at 2310.588 kb on - strand at 2310.592 kb on + strand at 2310.592 kb on + strand at 2310.592 kb on + strand at 2310.592 kb on + strand at 2310.593 kb on - strand at 2310.663 kb on - strand at 2310.681 kb on - strand at 2310.697 kb on + strand at 2310.795 kb on + strand at 2310.800 kb on + strand at 2310.800 kb on + strand at 2310.800 kb on + strand at 2310.806 kb on - strand at 2310.806 kb on - strand at 2310.910 kb on - strand, within CA264_09910 at 2310.913 kb on + strand, within CA264_09910 at 2310.918 kb on - strand, within CA264_09910 at 2311.096 kb on - strand, within CA264_09910 at 2311.098 kb on - strand, within CA264_09910 at 2311.098 kb on - strand, within CA264_09910 at 2311.108 kb on - strand, within CA264_09910 at 2311.109 kb on + strand, within CA264_09910 at 2311.146 kb on - strand, within CA264_09910 at 2311.146 kb on - strand, within CA264_09910 at 2311.172 kb on - strand, within CA264_09910 at 2311.197 kb on + strand, within CA264_09910 at 2311.198 kb on - strand, within CA264_09910 at 2311.374 kb on + strand at 2311.374 kb on + strand at 2311.374 kb on + strand at 2311.375 kb on - strand at 2311.375 kb on - strand at 2311.375 kb on - strand at 2311.375 kb on - strand at 2311.375 kb on - strand at 2311.375 kb on - strand at 2311.378 kb on + strand at 2311.378 kb on + strand at 2311.379 kb on - strand at 2311.414 kb on + strand at 2311.414 kb on + strand at 2311.415 kb on - strand at 2311.452 kb on + strand at 2311.453 kb on - strand at 2311.567 kb on + strand at 2311.568 kb on - strand at 2311.568 kb on - strand at 2311.568 kb on - strand at 2311.568 kb on - strand at 2311.568 kb on - strand at 2311.568 kb on - strand at 2311.568 kb on - strand at 2311.606 kb on + strand at 2311.638 kb on - strand at 2311.670 kb on - strand at 2311.688 kb on + strand at 2311.743 kb on + strand, within CA264_09915 at 2311.743 kb on + strand, within CA264_09915 at 2311.743 kb on + strand, within CA264_09915 at 2311.744 kb on - strand, within CA264_09915 at 2311.744 kb on - strand, within CA264_09915 at 2311.744 kb on - strand, within CA264_09915 at 2311.796 kb on + strand at 2311.818 kb on - strand at 2311.888 kb on - strand at 2312.026 kb on + strand, within CA264_09920 at 2312.067 kb on + strand, within CA264_09920 at 2312.068 kb on - strand, within CA264_09920 at 2312.299 kb on + strand at 2312.300 kb on - strand at 2312.300 kb on - strand at 2312.300 kb on - strand at 2312.302 kb on + strand at 2312.303 kb on - strand at 2312.303 kb on - strand at 2312.305 kb on + strand at 2312.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 2,309,810 + CA264_09905 0.22 +2.1 2,309,890 + CA264_09905 0.30 -0.6 2,309,891 - CA264_09905 0.30 -1.3 2,309,891 - CA264_09905 0.30 -1.4 2,309,891 - CA264_09905 0.30 -0.4 2,309,917 + CA264_09905 0.33 +2.3 2,310,036 - CA264_09905 0.44 -1.2 2,310,036 - CA264_09905 0.44 -0.3 2,310,039 - CA264_09905 0.45 -2.0 2,310,039 - CA264_09905 0.45 -1.6 2,310,039 - CA264_09905 0.45 -1.0 2,310,085 + CA264_09905 0.49 +0.3 2,310,085 + CA264_09905 0.49 -0.2 2,310,096 - CA264_09905 0.50 -0.4 2,310,159 + CA264_09905 0.56 +0.1 2,310,159 + CA264_09905 0.56 -1.0 2,310,160 - CA264_09905 0.56 -0.2 2,310,160 - CA264_09905 0.56 -0.4 2,310,160 - CA264_09905 0.56 +0.8 2,310,172 + CA264_09905 0.58 +0.8 2,310,188 + CA264_09905 0.59 -0.6 2,310,234 - CA264_09905 0.64 +1.3 2,310,317 + CA264_09905 0.72 -0.4 2,310,318 - CA264_09905 0.72 -0.9 2,310,318 - CA264_09905 0.72 +0.2 2,310,330 - CA264_09905 0.73 -0.7 2,310,587 + -0.3 2,310,587 + -0.2 2,310,588 - -0.2 2,310,588 - +0.1 2,310,592 + -0.7 2,310,592 + -0.2 2,310,592 + +1.0 2,310,592 + +0.9 2,310,593 - -1.1 2,310,663 - +0.2 2,310,681 - +0.0 2,310,697 + -0.4 2,310,795 + -0.3 2,310,800 + -0.2 2,310,800 + -0.6 2,310,800 + +0.0 2,310,806 - -1.3 2,310,806 - -2.0 2,310,910 - CA264_09910 0.19 -0.6 2,310,913 + CA264_09910 0.20 +1.3 2,310,918 - CA264_09910 0.21 -0.2 2,311,096 - CA264_09910 0.52 -0.9 2,311,098 - CA264_09910 0.52 +0.3 2,311,098 - CA264_09910 0.52 -0.7 2,311,108 - CA264_09910 0.54 +0.4 2,311,109 + CA264_09910 0.54 -2.2 2,311,146 - CA264_09910 0.60 -0.6 2,311,146 - CA264_09910 0.60 -0.6 2,311,172 - CA264_09910 0.65 -1.2 2,311,197 + CA264_09910 0.69 -0.2 2,311,198 - CA264_09910 0.69 -1.5 2,311,374 + -0.8 2,311,374 + -0.4 2,311,374 + -1.0 2,311,375 - -0.4 2,311,375 - -0.6 2,311,375 - +0.4 2,311,375 - -0.9 2,311,375 - -0.1 2,311,375 - -0.3 2,311,378 + -0.2 2,311,378 + -0.5 2,311,379 - +0.2 2,311,414 + -1.8 2,311,414 + -0.2 2,311,415 - -1.0 2,311,452 + -0.5 2,311,453 - +0.4 2,311,567 + -1.2 2,311,568 - -0.2 2,311,568 - +0.3 2,311,568 - -0.2 2,311,568 - +1.6 2,311,568 - -0.6 2,311,568 - +0.3 2,311,568 - +1.4 2,311,606 + -1.2 2,311,638 - +0.3 2,311,670 - +1.8 2,311,688 + +0.7 2,311,743 + CA264_09915 0.14 +0.4 2,311,743 + CA264_09915 0.14 +0.2 2,311,743 + CA264_09915 0.14 +1.2 2,311,744 - CA264_09915 0.15 +0.8 2,311,744 - CA264_09915 0.15 -2.2 2,311,744 - CA264_09915 0.15 -0.7 2,311,796 + -0.3 2,311,818 - -0.5 2,311,888 - +0.1 2,312,026 + CA264_09920 0.55 -1.2 2,312,067 + CA264_09920 0.64 +0.8 2,312,068 - CA264_09920 0.64 +0.8 2,312,299 + +0.2 2,312,300 - -0.7 2,312,300 - -0.2 2,312,300 - -0.1 2,312,302 + +0.8 2,312,303 - +0.8 2,312,303 - +0.6 2,312,305 + +0.2 2,312,306 - +0.2
Or see this region's nucleotide sequence