Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09080

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09070 and CA264_09075 overlap by 8 nucleotidesCA264_09075 and CA264_09080 are separated by 220 nucleotidesCA264_09080 and CA264_09085 are separated by 3 nucleotides CA264_09070: CA264_09070 - hypothetical protein, at 2,124,238 to 2,124,498 _09070 CA264_09075: CA264_09075 - response regulator, at 2,124,491 to 2,124,889 _09075 CA264_09080: CA264_09080 - FUSC family protein, at 2,125,110 to 2,126,162 _09080 CA264_09085: CA264_09085 - sugar hydrolase, at 2,126,166 to 2,128,481 _09085 Position (kb) 2125 2126 2127Strain fitness (log2 ratio) -2 -1 0 1 2at 2124.147 kb on - strandat 2124.173 kb on + strandat 2124.185 kb on + strandat 2124.185 kb on + strandat 2124.186 kb on - strandat 2124.187 kb on + strandat 2124.187 kb on + strandat 2124.188 kb on - strandat 2124.188 kb on - strandat 2124.188 kb on - strandat 2124.188 kb on - strandat 2124.188 kb on - strandat 2124.188 kb on - strandat 2124.192 kb on - strandat 2124.193 kb on + strandat 2124.194 kb on - strandat 2124.194 kb on - strandat 2124.196 kb on + strandat 2124.196 kb on + strandat 2124.196 kb on + strandat 2124.197 kb on - strandat 2124.216 kb on - strandat 2124.219 kb on + strandat 2124.231 kb on + strandat 2124.231 kb on + strandat 2124.231 kb on + strandat 2124.232 kb on - strandat 2124.329 kb on - strand, within CA264_09070at 2124.378 kb on - strand, within CA264_09070at 2124.384 kb on + strand, within CA264_09070at 2124.385 kb on - strand, within CA264_09070at 2124.474 kb on - strandat 2124.495 kb on - strandat 2124.497 kb on - strandat 2124.581 kb on + strand, within CA264_09075at 2124.587 kb on - strand, within CA264_09075at 2124.694 kb on + strand, within CA264_09075at 2124.694 kb on + strand, within CA264_09075at 2124.694 kb on - strand, within CA264_09075at 2124.731 kb on + strand, within CA264_09075at 2124.731 kb on + strand, within CA264_09075at 2124.765 kb on - strand, within CA264_09075at 2124.767 kb on - strand, within CA264_09075at 2124.909 kb on - strandat 2124.935 kb on - strandat 2124.940 kb on + strandat 2124.954 kb on - strandat 2124.970 kb on - strandat 2125.061 kb on + strandat 2125.102 kb on - strandat 2125.106 kb on + strandat 2125.106 kb on + strandat 2125.107 kb on - strandat 2125.107 kb on - strandat 2125.110 kb on - strandat 2125.110 kb on - strandat 2125.230 kb on + strand, within CA264_09080at 2125.501 kb on - strand, within CA264_09080at 2125.604 kb on + strand, within CA264_09080at 2125.605 kb on - strand, within CA264_09080at 2125.607 kb on - strand, within CA264_09080at 2125.734 kb on - strand, within CA264_09080at 2125.847 kb on + strand, within CA264_09080at 2125.887 kb on - strand, within CA264_09080at 2125.966 kb on + strand, within CA264_09080at 2125.967 kb on - strand, within CA264_09080at 2126.032 kb on + strand, within CA264_09080at 2126.032 kb on + strand, within CA264_09080at 2126.032 kb on + strand, within CA264_09080at 2126.032 kb on + strand, within CA264_09080at 2126.032 kb on + strand, within CA264_09080at 2126.033 kb on - strand, within CA264_09080at 2126.033 kb on - strand, within CA264_09080at 2126.033 kb on - strand, within CA264_09080at 2126.210 kb on - strandat 2126.210 kb on - strandat 2126.210 kb on - strandat 2126.299 kb on + strandat 2126.299 kb on + strandat 2126.309 kb on + strandat 2126.361 kb on + strandat 2126.361 kb on + strandat 2126.362 kb on - strandat 2126.362 kb on - strandat 2126.362 kb on - strandat 2126.362 kb on - strandat 2126.362 kb on - strandat 2126.362 kb on - strandat 2126.362 kb on - strandat 2126.509 kb on + strand, within CA264_09085at 2126.510 kb on - strand, within CA264_09085at 2126.510 kb on - strand, within CA264_09085at 2126.520 kb on + strand, within CA264_09085at 2126.573 kb on - strand, within CA264_09085at 2126.579 kb on - strand, within CA264_09085at 2126.614 kb on + strand, within CA264_09085at 2126.615 kb on - strand, within CA264_09085at 2126.615 kb on - strand, within CA264_09085at 2126.662 kb on + strand, within CA264_09085at 2126.764 kb on + strand, within CA264_09085at 2126.774 kb on - strand, within CA264_09085at 2126.796 kb on - strand, within CA264_09085at 2126.867 kb on + strand, within CA264_09085at 2126.889 kb on + strand, within CA264_09085at 2126.899 kb on + strand, within CA264_09085at 2126.918 kb on + strand, within CA264_09085at 2126.930 kb on - strand, within CA264_09085at 2126.983 kb on + strand, within CA264_09085at 2126.983 kb on + strand, within CA264_09085at 2126.990 kb on - strand, within CA264_09085at 2126.990 kb on - strand, within CA264_09085at 2127.002 kb on + strand, within CA264_09085at 2127.003 kb on - strand, within CA264_09085at 2127.038 kb on - strand, within CA264_09085at 2127.052 kb on + strand, within CA264_09085at 2127.052 kb on + strand, within CA264_09085at 2127.053 kb on - strand, within CA264_09085at 2127.070 kb on + strand, within CA264_09085at 2127.070 kb on + strand, within CA264_09085at 2127.071 kb on - strand, within CA264_09085at 2127.073 kb on + strand, within CA264_09085at 2127.159 kb on - strand, within CA264_09085

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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2,124,147 - +0.4
2,124,173 + +0.2
2,124,185 + +0.7
2,124,185 + +1.1
2,124,186 - +0.1
2,124,187 + -0.4
2,124,187 + +1.0
2,124,188 - -0.0
2,124,188 - +0.1
2,124,188 - +0.7
2,124,188 - +0.7
2,124,188 - -0.5
2,124,188 - -0.3
2,124,192 - +0.2
2,124,193 + +1.9
2,124,194 - -0.8
2,124,194 - -1.0
2,124,196 + +0.6
2,124,196 + +1.2
2,124,196 + +0.5
2,124,197 - +0.1
2,124,216 - +0.0
2,124,219 + +0.6
2,124,231 + +0.5
2,124,231 + +2.3
2,124,231 + +1.5
2,124,232 - +0.4
2,124,329 - CA264_09070 0.35 +0.2
2,124,378 - CA264_09070 0.54 +0.7
2,124,384 + CA264_09070 0.56 -0.1
2,124,385 - CA264_09070 0.56 -0.7
2,124,474 - +2.3
2,124,495 - -0.5
2,124,497 - +1.7
2,124,581 + CA264_09075 0.23 +1.7
2,124,587 - CA264_09075 0.24 +0.1
2,124,694 + CA264_09075 0.51 -0.2
2,124,694 + CA264_09075 0.51 +0.0
2,124,694 - CA264_09075 0.51 -0.8
2,124,731 + CA264_09075 0.60 +0.7
2,124,731 + CA264_09075 0.60 +0.8
2,124,765 - CA264_09075 0.69 -0.5
2,124,767 - CA264_09075 0.69 -0.0
2,124,909 - +0.1
2,124,935 - -0.6
2,124,940 + -0.3
2,124,954 - -0.1
2,124,970 - +1.2
2,125,061 + +0.2
2,125,102 - +0.7
2,125,106 + -0.3
2,125,106 + -1.1
2,125,107 - -1.8
2,125,107 - -0.4
2,125,110 - -0.0
2,125,110 - -0.6
2,125,230 + CA264_09080 0.11 -0.8
2,125,501 - CA264_09080 0.37 -0.3
2,125,604 + CA264_09080 0.47 +0.7
2,125,605 - CA264_09080 0.47 -0.0
2,125,607 - CA264_09080 0.47 -0.5
2,125,734 - CA264_09080 0.59 -0.3
2,125,847 + CA264_09080 0.70 +0.4
2,125,887 - CA264_09080 0.74 +0.4
2,125,966 + CA264_09080 0.81 -0.3
2,125,967 - CA264_09080 0.81 -1.1
2,126,032 + CA264_09080 0.88 -0.2
2,126,032 + CA264_09080 0.88 +1.2
2,126,032 + CA264_09080 0.88 -0.3
2,126,032 + CA264_09080 0.88 -0.8
2,126,032 + CA264_09080 0.88 -0.6
2,126,033 - CA264_09080 0.88 -0.2
2,126,033 - CA264_09080 0.88 -0.7
2,126,033 - CA264_09080 0.88 +0.2
2,126,210 - +0.5
2,126,210 - -0.6
2,126,210 - -0.3
2,126,299 + -0.4
2,126,299 + -0.2
2,126,309 + +0.0
2,126,361 + +0.2
2,126,361 + +0.5
2,126,362 - +0.5
2,126,362 - -0.3
2,126,362 - -1.3
2,126,362 - -2.0
2,126,362 - +1.5
2,126,362 - -0.0
2,126,362 - +0.0
2,126,509 + CA264_09085 0.15 -0.0
2,126,510 - CA264_09085 0.15 -2.1
2,126,510 - CA264_09085 0.15 -1.8
2,126,520 + CA264_09085 0.15 -0.3
2,126,573 - CA264_09085 0.18 +0.2
2,126,579 - CA264_09085 0.18 +0.2
2,126,614 + CA264_09085 0.19 +0.7
2,126,615 - CA264_09085 0.19 -1.6
2,126,615 - CA264_09085 0.19 +0.7
2,126,662 + CA264_09085 0.21 -0.1
2,126,764 + CA264_09085 0.26 +0.0
2,126,774 - CA264_09085 0.26 +1.8
2,126,796 - CA264_09085 0.27 +0.2
2,126,867 + CA264_09085 0.30 -0.5
2,126,889 + CA264_09085 0.31 +0.2
2,126,899 + CA264_09085 0.32 -1.4
2,126,918 + CA264_09085 0.32 -0.4
2,126,930 - CA264_09085 0.33 -0.2
2,126,983 + CA264_09085 0.35 -1.1
2,126,983 + CA264_09085 0.35 -0.3
2,126,990 - CA264_09085 0.36 +0.7
2,126,990 - CA264_09085 0.36 -1.2
2,127,002 + CA264_09085 0.36 -1.6
2,127,003 - CA264_09085 0.36 -0.8
2,127,038 - CA264_09085 0.38 -0.5
2,127,052 + CA264_09085 0.38 -2.4
2,127,052 + CA264_09085 0.38 +0.2
2,127,053 - CA264_09085 0.38 -1.3
2,127,070 + CA264_09085 0.39 -1.0
2,127,070 + CA264_09085 0.39 +1.3
2,127,071 - CA264_09085 0.39 -1.6
2,127,073 + CA264_09085 0.39 +0.1
2,127,159 - CA264_09085 0.43 +0.4

Or see this region's nucleotide sequence