Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08665

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08660 and CA264_08665 are separated by 515 nucleotidesCA264_08665 and CA264_08670 are separated by 481 nucleotides CA264_08660: CA264_08660 - sodium:proton antiporter, at 2,008,506 to 2,009,846 _08660 CA264_08665: CA264_08665 - N-acetylmuramoyl-L-alanine amidase, at 2,010,362 to 2,011,282 _08665 CA264_08670: CA264_08670 - hypothetical protein, at 2,011,764 to 2,013,023 _08670 Position (kb) 2010 2011 2012Strain fitness (log2 ratio) -2 -1 0 1 2at 2009.611 kb on + strand, within CA264_08660at 2009.761 kb on - strandat 2009.786 kb on + strandat 2009.848 kb on + strandat 2009.849 kb on - strandat 2009.850 kb on + strandat 2009.850 kb on + strandat 2009.850 kb on + strandat 2009.850 kb on + strandat 2009.851 kb on - strandat 2009.851 kb on - strandat 2009.922 kb on - strandat 2009.922 kb on - strandat 2009.927 kb on + strandat 2009.927 kb on + strandat 2009.985 kb on + strandat 2010.000 kb on + strandat 2010.069 kb on - strandat 2010.185 kb on - strandat 2010.255 kb on + strandat 2010.330 kb on - strandat 2010.361 kb on + strandat 2010.362 kb on - strandat 2010.368 kb on + strandat 2010.368 kb on + strandat 2010.368 kb on + strandat 2010.369 kb on - strandat 2010.371 kb on - strandat 2010.674 kb on + strand, within CA264_08665at 2010.675 kb on - strand, within CA264_08665at 2010.701 kb on + strand, within CA264_08665at 2010.855 kb on + strand, within CA264_08665at 2011.078 kb on + strand, within CA264_08665at 2011.256 kb on + strandat 2011.274 kb on + strandat 2011.274 kb on + strandat 2011.301 kb on - strandat 2011.358 kb on + strandat 2011.367 kb on - strandat 2011.547 kb on + strandat 2011.548 kb on - strandat 2011.561 kb on - strandat 2011.600 kb on + strandat 2011.603 kb on - strandat 2011.603 kb on - strandat 2011.671 kb on + strandat 2011.676 kb on + strandat 2011.676 kb on + strandat 2011.722 kb on - strandat 2011.750 kb on + strandat 2011.751 kb on - strandat 2011.751 kb on - strandat 2011.751 kb on - strandat 2011.751 kb on - strandat 2011.755 kb on + strandat 2011.755 kb on + strandat 2011.755 kb on + strandat 2011.756 kb on - strandat 2011.756 kb on - strandat 2011.757 kb on + strandat 2011.758 kb on - strandat 2011.782 kb on + strandat 2011.782 kb on + strandat 2011.782 kb on + strandat 2011.783 kb on - strandat 2011.783 kb on - strandat 2011.783 kb on - strandat 2011.783 kb on - strandat 2011.783 kb on - strandat 2011.783 kb on - strandat 2011.787 kb on - strandat 2011.819 kb on + strandat 2011.819 kb on + strandat 2011.820 kb on - strandat 2011.820 kb on - strandat 2011.948 kb on + strand, within CA264_08670at 2012.128 kb on + strand, within CA264_08670at 2012.217 kb on - strand, within CA264_08670at 2012.217 kb on - strand, within CA264_08670at 2012.221 kb on + strand, within CA264_08670

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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2,009,611 + CA264_08660 0.82 -0.3
2,009,761 - +0.7
2,009,786 + +0.4
2,009,848 + +0.4
2,009,849 - -0.0
2,009,850 + -0.3
2,009,850 + +0.1
2,009,850 + -0.1
2,009,850 + -0.0
2,009,851 - -0.2
2,009,851 - -0.2
2,009,922 - -0.3
2,009,922 - +0.9
2,009,927 + +0.2
2,009,927 + +0.2
2,009,985 + -0.0
2,010,000 + -1.9
2,010,069 - -0.9
2,010,185 - +0.0
2,010,255 + -0.4
2,010,330 - -0.3
2,010,361 + -0.3
2,010,362 - +0.7
2,010,368 + +1.2
2,010,368 + +1.0
2,010,368 + -0.1
2,010,369 - +0.2
2,010,371 - +0.7
2,010,674 + CA264_08665 0.34 +1.5
2,010,675 - CA264_08665 0.34 +0.2
2,010,701 + CA264_08665 0.37 -0.3
2,010,855 + CA264_08665 0.54 +0.1
2,011,078 + CA264_08665 0.78 +0.3
2,011,256 + -0.6
2,011,274 + +0.7
2,011,274 + -0.4
2,011,301 - +0.7
2,011,358 + -0.5
2,011,367 - -1.6
2,011,547 + +2.3
2,011,548 - +0.0
2,011,561 - +0.8
2,011,600 + +0.7
2,011,603 - -0.5
2,011,603 - -0.6
2,011,671 + +0.7
2,011,676 + -1.3
2,011,676 + -0.4
2,011,722 - +0.4
2,011,750 + -0.3
2,011,751 - +0.3
2,011,751 - +0.1
2,011,751 - +0.3
2,011,751 - +0.6
2,011,755 + +1.0
2,011,755 + -0.1
2,011,755 + -0.1
2,011,756 - -1.2
2,011,756 - +0.2
2,011,757 + +0.4
2,011,758 - +0.2
2,011,782 + -1.6
2,011,782 + +0.4
2,011,782 + +0.1
2,011,783 - +1.4
2,011,783 - -2.3
2,011,783 - +0.5
2,011,783 - -0.0
2,011,783 - -0.2
2,011,783 - -1.3
2,011,787 - +0.7
2,011,819 + +0.6
2,011,819 + +0.8
2,011,820 - +0.5
2,011,820 - +1.7
2,011,948 + CA264_08670 0.15 +0.4
2,012,128 + CA264_08670 0.29 +0.3
2,012,217 - CA264_08670 0.36 +0.2
2,012,217 - CA264_08670 0.36 +0.1
2,012,221 + CA264_08670 0.36 +0.5

Or see this region's nucleotide sequence