Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04240 and CA264_04245 overlap by 31 nucleotides CA264_04245 and CA264_04250 overlap by 19 nucleotides
CA264_04240: CA264_04240 - NADH-quinone oxidoreductase subunit H, at 978,795 to 979,757
_04240
CA264_04245: CA264_04245 - NADH-quinone oxidoreductase subunit G, at 979,727 to 982,456
_04245
CA264_04250: CA264_04250 - NADH oxidoreductase (quinone) subunit F, at 982,438 to 983,739
_04250
Position (kb) 979
980
981
982
983 Strain fitness (log2 ratio) -2
-1
0
1
2 at 978.748 kb on - strand at 978.771 kb on + strand at 978.778 kb on - strand at 978.953 kb on + strand, within CA264_04240 at 978.954 kb on - strand, within CA264_04240 at 979.009 kb on + strand, within CA264_04240 at 979.009 kb on + strand, within CA264_04240 at 979.010 kb on - strand, within CA264_04240 at 979.051 kb on + strand, within CA264_04240 at 979.383 kb on + strand, within CA264_04240 at 979.383 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.386 kb on - strand, within CA264_04240 at 979.386 kb on - strand, within CA264_04240 at 979.393 kb on + strand, within CA264_04240 at 979.393 kb on + strand, within CA264_04240 at 979.394 kb on - strand, within CA264_04240 at 979.394 kb on - strand, within CA264_04240 at 979.499 kb on + strand, within CA264_04240 at 979.569 kb on - strand, within CA264_04240 at 979.637 kb on - strand, within CA264_04240 at 979.637 kb on - strand, within CA264_04240 at 979.680 kb on - strand at 979.775 kb on + strand at 979.853 kb on - strand at 979.853 kb on - strand at 979.865 kb on - strand at 979.897 kb on + strand at 979.897 kb on + strand at 979.898 kb on - strand at 979.963 kb on - strand at 979.963 kb on - strand at 979.976 kb on - strand at 980.046 kb on + strand, within CA264_04245 at 980.047 kb on - strand, within CA264_04245 at 980.424 kb on - strand, within CA264_04245 at 980.453 kb on - strand, within CA264_04245 at 980.466 kb on + strand, within CA264_04245 at 980.719 kb on + strand, within CA264_04245 at 980.768 kb on - strand, within CA264_04245 at 980.768 kb on - strand, within CA264_04245 at 980.867 kb on + strand, within CA264_04245 at 980.867 kb on + strand, within CA264_04245 at 980.868 kb on - strand, within CA264_04245 at 980.868 kb on - strand, within CA264_04245 at 980.873 kb on + strand, within CA264_04245 at 981.121 kb on - strand, within CA264_04245 at 981.194 kb on + strand, within CA264_04245 at 981.195 kb on - strand, within CA264_04245 at 981.195 kb on - strand, within CA264_04245 at 981.317 kb on - strand, within CA264_04245 at 981.317 kb on - strand, within CA264_04245 at 981.334 kb on + strand, within CA264_04245 at 981.404 kb on + strand, within CA264_04245 at 981.433 kb on + strand, within CA264_04245 at 981.433 kb on + strand, within CA264_04245 at 981.434 kb on - strand, within CA264_04245 at 981.486 kb on + strand, within CA264_04245 at 981.571 kb on + strand, within CA264_04245 at 981.573 kb on + strand, within CA264_04245 at 981.573 kb on + strand, within CA264_04245 at 981.574 kb on - strand, within CA264_04245 at 981.574 kb on - strand, within CA264_04245 at 981.686 kb on + strand, within CA264_04245 at 981.687 kb on - strand, within CA264_04245 at 981.813 kb on + strand, within CA264_04245 at 981.814 kb on - strand, within CA264_04245 at 981.832 kb on + strand, within CA264_04245 at 981.838 kb on + strand, within CA264_04245 at 981.842 kb on + strand, within CA264_04245 at 981.843 kb on - strand, within CA264_04245 at 981.843 kb on - strand, within CA264_04245 at 981.843 kb on - strand, within CA264_04245 at 981.918 kb on + strand, within CA264_04245 at 981.919 kb on - strand, within CA264_04245 at 981.921 kb on - strand, within CA264_04245 at 981.966 kb on + strand, within CA264_04245 at 981.975 kb on + strand, within CA264_04245 at 982.053 kb on + strand, within CA264_04245 at 982.053 kb on + strand, within CA264_04245 at 982.053 kb on + strand, within CA264_04245 at 982.053 kb on + strand, within CA264_04245 at 982.054 kb on - strand, within CA264_04245 at 982.074 kb on + strand, within CA264_04245 at 982.084 kb on - strand, within CA264_04245 at 982.300 kb on - strand at 982.418 kb on + strand at 982.440 kb on - strand at 982.440 kb on - strand at 982.443 kb on + strand at 982.443 kb on + strand at 982.443 kb on + strand at 982.593 kb on - strand, within CA264_04250 at 982.660 kb on + strand, within CA264_04250 at 982.660 kb on + strand, within CA264_04250 at 982.829 kb on + strand, within CA264_04250 at 982.908 kb on - strand, within CA264_04250 at 983.012 kb on + strand, within CA264_04250 at 983.091 kb on + strand, within CA264_04250 at 983.092 kb on - strand, within CA264_04250 at 983.266 kb on - strand, within CA264_04250 at 983.281 kb on + strand, within CA264_04250 at 983.290 kb on - strand, within CA264_04250 at 983.298 kb on - strand, within CA264_04250 at 983.310 kb on - strand, within CA264_04250 at 983.321 kb on - strand, within CA264_04250 at 983.355 kb on - strand, within CA264_04250 at 983.355 kb on - strand, within CA264_04250 at 983.375 kb on + strand, within CA264_04250 at 983.393 kb on - strand, within CA264_04250
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 978,748 - +1.1 978,771 + +0.2 978,778 - +0.4 978,953 + CA264_04240 0.16 -0.6 978,954 - CA264_04240 0.17 -0.2 979,009 + CA264_04240 0.22 +2.4 979,009 + CA264_04240 0.22 +0.2 979,010 - CA264_04240 0.22 -0.9 979,051 + CA264_04240 0.27 +0.5 979,383 + CA264_04240 0.61 -1.2 979,383 + CA264_04240 0.61 +1.8 979,385 + CA264_04240 0.61 -1.4 979,385 + CA264_04240 0.61 -0.3 979,385 + CA264_04240 0.61 +0.0 979,385 + CA264_04240 0.61 +1.6 979,386 - CA264_04240 0.61 +0.1 979,386 - CA264_04240 0.61 +0.8 979,393 + CA264_04240 0.62 +0.9 979,393 + CA264_04240 0.62 -0.3 979,394 - CA264_04240 0.62 +0.5 979,394 - CA264_04240 0.62 +1.0 979,499 + CA264_04240 0.73 +0.4 979,569 - CA264_04240 0.80 +0.3 979,637 - CA264_04240 0.87 +0.3 979,637 - CA264_04240 0.87 +1.0 979,680 - -0.1 979,775 + +1.4 979,853 - -0.2 979,853 - +0.8 979,865 - -0.7 979,897 + +0.7 979,897 + +0.3 979,898 - +0.6 979,963 - +1.0 979,963 - -0.1 979,976 - +1.1 980,046 + CA264_04245 0.12 -0.2 980,047 - CA264_04245 0.12 -0.5 980,424 - CA264_04245 0.26 +0.3 980,453 - CA264_04245 0.27 +1.2 980,466 + CA264_04245 0.27 +0.3 980,719 + CA264_04245 0.36 -0.1 980,768 - CA264_04245 0.38 +0.1 980,768 - CA264_04245 0.38 -1.1 980,867 + CA264_04245 0.42 -0.1 980,867 + CA264_04245 0.42 +0.5 980,868 - CA264_04245 0.42 +0.8 980,868 - CA264_04245 0.42 +0.2 980,873 + CA264_04245 0.42 +0.1 981,121 - CA264_04245 0.51 -0.0 981,194 + CA264_04245 0.54 +0.9 981,195 - CA264_04245 0.54 -0.2 981,195 - CA264_04245 0.54 -0.8 981,317 - CA264_04245 0.58 +0.8 981,317 - CA264_04245 0.58 -0.1 981,334 + CA264_04245 0.59 -0.2 981,404 + CA264_04245 0.61 +0.1 981,433 + CA264_04245 0.62 +1.3 981,433 + CA264_04245 0.62 +0.1 981,434 - CA264_04245 0.63 -0.3 981,486 + CA264_04245 0.64 -0.2 981,571 + CA264_04245 0.68 -2.0 981,573 + CA264_04245 0.68 -0.0 981,573 + CA264_04245 0.68 +0.8 981,574 - CA264_04245 0.68 -0.6 981,574 - CA264_04245 0.68 +0.3 981,686 + CA264_04245 0.72 +0.5 981,687 - CA264_04245 0.72 +0.0 981,813 + CA264_04245 0.76 +0.3 981,814 - CA264_04245 0.76 +0.8 981,832 + CA264_04245 0.77 +1.0 981,838 + CA264_04245 0.77 +0.8 981,842 + CA264_04245 0.77 +0.8 981,843 - CA264_04245 0.78 -0.6 981,843 - CA264_04245 0.78 +0.2 981,843 - CA264_04245 0.78 -0.3 981,918 + CA264_04245 0.80 -0.3 981,919 - CA264_04245 0.80 +0.4 981,921 - CA264_04245 0.80 -0.1 981,966 + CA264_04245 0.82 +0.1 981,975 + CA264_04245 0.82 +0.4 982,053 + CA264_04245 0.85 +0.5 982,053 + CA264_04245 0.85 +0.0 982,053 + CA264_04245 0.85 +0.7 982,053 + CA264_04245 0.85 +0.3 982,054 - CA264_04245 0.85 -0.8 982,074 + CA264_04245 0.86 +0.5 982,084 - CA264_04245 0.86 -0.0 982,300 - +0.0 982,418 + -0.0 982,440 - -0.1 982,440 - +0.2 982,443 + +2.4 982,443 + -0.1 982,443 + -1.3 982,593 - CA264_04250 0.12 -0.3 982,660 + CA264_04250 0.17 -0.7 982,660 + CA264_04250 0.17 +0.1 982,829 + CA264_04250 0.30 +0.4 982,908 - CA264_04250 0.36 +0.0 983,012 + CA264_04250 0.44 +1.2 983,091 + CA264_04250 0.50 +0.5 983,092 - CA264_04250 0.50 -0.2 983,266 - CA264_04250 0.64 +1.1 983,281 + CA264_04250 0.65 +1.4 983,290 - CA264_04250 0.65 -1.2 983,298 - CA264_04250 0.66 -0.1 983,310 - CA264_04250 0.67 +0.5 983,321 - CA264_04250 0.68 -0.1 983,355 - CA264_04250 0.70 +0.3 983,355 - CA264_04250 0.70 +0.0 983,375 + CA264_04250 0.72 +0.1 983,393 - CA264_04250 0.73 +0.2
Or see this region's nucleotide sequence