Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02955

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02955 and CA264_02960 are separated by 37 nucleotidesCA264_02960 and CA264_02965 are separated by 28 nucleotides CA264_02955: CA264_02955 - undecaprenyl-phosphate glucose phosphotransferase, at 679,276 to 680,670 _02955 CA264_02960: CA264_02960 - glycosyltransferase, at 680,708 to 681,481 _02960 CA264_02965: CA264_02965 - hypothetical protein, at 681,510 to 681,707 _02965 Position (kb) 679 680 681Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 678.355 kb on - strandat 678.358 kb on - strandat 678.530 kb on - strandat 678.597 kb on - strandat 678.651 kb on - strandat 678.651 kb on - strandat 678.651 kb on - strandat 678.655 kb on - strandat 678.655 kb on - strandat 678.948 kb on - strandat 678.948 kb on - strandat 679.294 kb on + strandat 679.294 kb on + strandat 679.294 kb on + strandat 679.298 kb on - strandat 679.323 kb on - strandat 679.335 kb on + strandat 679.405 kb on + strandat 679.405 kb on + strandat 679.522 kb on - strand, within CA264_02955at 679.530 kb on + strand, within CA264_02955at 679.546 kb on - strand, within CA264_02955at 679.561 kb on - strand, within CA264_02955at 679.606 kb on + strand, within CA264_02955at 679.607 kb on - strand, within CA264_02955at 679.612 kb on + strand, within CA264_02955at 679.612 kb on + strand, within CA264_02955at 679.613 kb on - strand, within CA264_02955at 679.705 kb on + strand, within CA264_02955at 679.706 kb on - strand, within CA264_02955at 679.825 kb on + strand, within CA264_02955at 679.826 kb on - strand, within CA264_02955at 679.827 kb on + strand, within CA264_02955at 679.897 kb on + strand, within CA264_02955at 679.969 kb on + strand, within CA264_02955at 680.016 kb on + strand, within CA264_02955at 680.016 kb on + strand, within CA264_02955at 680.069 kb on + strand, within CA264_02955at 680.179 kb on - strand, within CA264_02955at 680.251 kb on + strand, within CA264_02955at 680.278 kb on - strand, within CA264_02955at 680.456 kb on + strand, within CA264_02955at 680.457 kb on - strand, within CA264_02955at 680.457 kb on - strand, within CA264_02955at 680.457 kb on - strand, within CA264_02955at 680.457 kb on - strand, within CA264_02955at 680.467 kb on - strand, within CA264_02955at 680.569 kb on + strandat 680.569 kb on + strandat 680.569 kb on + strandat 680.570 kb on - strandat 680.581 kb on + strandat 680.581 kb on + strandat 680.582 kb on - strandat 680.582 kb on - strandat 680.601 kb on + strandat 680.602 kb on - strandat 680.646 kb on - strandat 680.646 kb on - strandat 680.665 kb on + strandat 680.666 kb on - strandat 680.676 kb on + strandat 680.676 kb on + strandat 680.740 kb on + strandat 680.752 kb on + strandat 680.753 kb on - strandat 680.794 kb on + strand, within CA264_02960at 680.797 kb on + strand, within CA264_02960at 680.798 kb on - strand, within CA264_02960at 680.811 kb on - strand, within CA264_02960at 680.978 kb on - strand, within CA264_02960at 680.978 kb on - strand, within CA264_02960at 681.029 kb on + strand, within CA264_02960at 681.284 kb on + strand, within CA264_02960at 681.285 kb on - strand, within CA264_02960at 681.285 kb on - strand, within CA264_02960at 681.285 kb on - strand, within CA264_02960at 681.285 kb on - strand, within CA264_02960at 681.294 kb on - strand, within CA264_02960at 681.294 kb on - strand, within CA264_02960at 681.294 kb on - strand, within CA264_02960at 681.354 kb on - strand, within CA264_02960at 681.476 kb on - strandat 681.480 kb on - strandat 681.480 kb on - strandat 681.537 kb on + strand, within CA264_02965at 681.537 kb on + strand, within CA264_02965at 681.538 kb on - strand, within CA264_02965at 681.559 kb on - strand, within CA264_02965at 681.559 kb on - strand, within CA264_02965at 681.591 kb on + strand, within CA264_02965at 681.591 kb on + strand, within CA264_02965at 681.593 kb on + strand, within CA264_02965at 681.594 kb on - strand, within CA264_02965at 681.607 kb on - strand, within CA264_02965

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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678,355 - +0.3
678,358 - -1.2
678,530 - +0.8
678,597 - -1.1
678,651 - -0.5
678,651 - +1.2
678,651 - +1.2
678,655 - +0.9
678,655 - -0.5
678,948 - +0.6
678,948 - +0.3
679,294 + -0.1
679,294 + -0.5
679,294 + +0.8
679,298 - -0.2
679,323 - +0.0
679,335 + -0.3
679,405 + -0.8
679,405 + -0.5
679,522 - CA264_02955 0.18 +0.3
679,530 + CA264_02955 0.18 -0.8
679,546 - CA264_02955 0.19 -0.2
679,561 - CA264_02955 0.20 +1.0
679,606 + CA264_02955 0.24 +1.0
679,607 - CA264_02955 0.24 -0.2
679,612 + CA264_02955 0.24 -0.5
679,612 + CA264_02955 0.24 +0.2
679,613 - CA264_02955 0.24 +0.0
679,705 + CA264_02955 0.31 +0.0
679,706 - CA264_02955 0.31 -1.2
679,825 + CA264_02955 0.39 -0.1
679,826 - CA264_02955 0.39 -0.5
679,827 + CA264_02955 0.39 -1.1
679,897 + CA264_02955 0.45 +0.1
679,969 + CA264_02955 0.50 -0.1
680,016 + CA264_02955 0.53 +0.2
680,016 + CA264_02955 0.53 +0.0
680,069 + CA264_02955 0.57 -1.0
680,179 - CA264_02955 0.65 -0.4
680,251 + CA264_02955 0.70 -1.2
680,278 - CA264_02955 0.72 +0.5
680,456 + CA264_02955 0.85 -0.2
680,457 - CA264_02955 0.85 +0.2
680,457 - CA264_02955 0.85 +0.1
680,457 - CA264_02955 0.85 -0.1
680,457 - CA264_02955 0.85 +0.3
680,467 - CA264_02955 0.85 +1.8
680,569 + +0.5
680,569 + -1.7
680,569 + -0.3
680,570 - -1.8
680,581 + -0.2
680,581 + -0.7
680,582 - +1.1
680,582 - +2.0
680,601 + -0.3
680,602 - +0.3
680,646 - -0.2
680,646 - +0.3
680,665 + -0.1
680,666 - +0.0
680,676 + -1.2
680,676 + +0.8
680,740 + -1.2
680,752 + -0.0
680,753 - +0.2
680,794 + CA264_02960 0.11 +1.4
680,797 + CA264_02960 0.11 -0.0
680,798 - CA264_02960 0.12 +0.8
680,811 - CA264_02960 0.13 -0.1
680,978 - CA264_02960 0.35 -2.8
680,978 - CA264_02960 0.35 -1.2
681,029 + CA264_02960 0.41 +1.4
681,284 + CA264_02960 0.74 -1.0
681,285 - CA264_02960 0.75 +0.2
681,285 - CA264_02960 0.75 -0.8
681,285 - CA264_02960 0.75 +0.6
681,285 - CA264_02960 0.75 +0.2
681,294 - CA264_02960 0.76 -1.5
681,294 - CA264_02960 0.76 +0.3
681,294 - CA264_02960 0.76 -0.8
681,354 - CA264_02960 0.83 -1.7
681,476 - +0.1
681,480 - -0.8
681,480 - -1.3
681,537 + CA264_02965 0.14 +0.4
681,537 + CA264_02965 0.14 +0.0
681,538 - CA264_02965 0.14 +0.4
681,559 - CA264_02965 0.25 -0.2
681,559 - CA264_02965 0.25 +0.8
681,591 + CA264_02965 0.41 -0.8
681,591 + CA264_02965 0.41 -0.4
681,593 + CA264_02965 0.42 +0.8
681,594 - CA264_02965 0.42 -0.2
681,607 - CA264_02965 0.49 +0.4

Or see this region's nucleotide sequence