Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02115 and CA264_02120 are separated by 78 nucleotides CA264_02120 and CA264_02125 are separated by 186 nucleotides CA264_02125 and CA264_02130 are separated by 255 nucleotides CA264_02130 and CA264_02135 are separated by 24 nucleotides
CA264_02115: CA264_02115 - threonylcarbamoyl-AMP synthase, at 489,008 to 489,634
_02115
CA264_02120: CA264_02120 - GNAT family N-acetyltransferase, at 489,713 to 490,270
_02120
CA264_02125: CA264_02125 - alpha/beta hydrolase, at 490,457 to 490,996
_02125
CA264_02130: CA264_02130 - pseudouridine synthase, at 491,252 to 491,926
_02130
CA264_02135: CA264_02135 - GNAT family N-acetyltransferase, at 491,951 to 492,520
_02135
Position (kb) 490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 489.461 kb on + strand, within CA264_02115 at 489.461 kb on + strand, within CA264_02115 at 489.517 kb on - strand, within CA264_02115 at 489.517 kb on - strand, within CA264_02115 at 489.640 kb on + strand at 489.640 kb on + strand at 489.641 kb on - strand at 489.658 kb on + strand at 489.658 kb on + strand at 489.658 kb on + strand at 489.659 kb on - strand at 489.659 kb on - strand at 489.659 kb on - strand at 489.664 kb on - strand at 489.664 kb on - strand at 489.669 kb on + strand at 489.795 kb on - strand, within CA264_02120 at 489.795 kb on - strand, within CA264_02120 at 489.863 kb on + strand, within CA264_02120 at 489.864 kb on - strand, within CA264_02120 at 489.869 kb on + strand, within CA264_02120 at 489.900 kb on + strand, within CA264_02120 at 489.900 kb on + strand, within CA264_02120 at 489.901 kb on - strand, within CA264_02120 at 489.901 kb on - strand, within CA264_02120 at 490.007 kb on - strand, within CA264_02120 at 490.095 kb on + strand, within CA264_02120 at 490.276 kb on + strand at 490.290 kb on - strand at 490.292 kb on + strand at 490.292 kb on + strand at 490.292 kb on + strand at 490.298 kb on + strand at 490.305 kb on + strand at 490.428 kb on + strand at 490.429 kb on - strand at 490.429 kb on - strand at 490.431 kb on - strand at 490.431 kb on - strand at 490.456 kb on + strand at 490.474 kb on + strand at 490.475 kb on - strand at 490.476 kb on + strand at 490.477 kb on - strand at 490.483 kb on - strand at 490.819 kb on + strand, within CA264_02125 at 490.832 kb on - strand, within CA264_02125 at 490.847 kb on + strand, within CA264_02125 at 490.847 kb on + strand, within CA264_02125 at 490.847 kb on + strand, within CA264_02125 at 490.848 kb on - strand, within CA264_02125 at 490.848 kb on - strand, within CA264_02125 at 490.848 kb on - strand, within CA264_02125 at 490.899 kb on - strand, within CA264_02125 at 490.928 kb on - strand, within CA264_02125 at 491.034 kb on - strand at 491.128 kb on + strand at 491.164 kb on + strand at 491.194 kb on + strand at 491.194 kb on + strand at 491.194 kb on + strand at 491.194 kb on + strand at 491.195 kb on - strand at 491.195 kb on - strand at 491.200 kb on + strand at 491.200 kb on + strand at 491.200 kb on + strand at 491.201 kb on - strand at 491.207 kb on + strand at 491.207 kb on + strand at 491.208 kb on - strand at 491.257 kb on + strand at 491.619 kb on - strand, within CA264_02130 at 491.619 kb on - strand, within CA264_02130 at 491.716 kb on - strand, within CA264_02130 at 491.716 kb on - strand, within CA264_02130 at 491.727 kb on - strand, within CA264_02130 at 491.727 kb on - strand, within CA264_02130 at 491.731 kb on + strand, within CA264_02130 at 491.891 kb on + strand at 491.919 kb on + strand at 491.919 kb on + strand at 491.919 kb on + strand at 491.920 kb on - strand at 491.920 kb on - strand at 491.920 kb on - strand at 491.920 kb on - strand at 491.939 kb on - strand at 491.939 kb on - strand at 491.943 kb on - strand at 491.952 kb on + strand at 491.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 489,461 + CA264_02115 0.72 +2.5 489,461 + CA264_02115 0.72 -1.4 489,517 - CA264_02115 0.81 -1.4 489,517 - CA264_02115 0.81 -2.1 489,640 + -1.3 489,640 + -1.8 489,641 - -0.4 489,658 + -1.5 489,658 + -1.4 489,658 + -1.1 489,659 - -1.0 489,659 - -1.5 489,659 - -0.9 489,664 - -0.3 489,664 - -1.8 489,669 + -1.6 489,795 - CA264_02120 0.15 +0.7 489,795 - CA264_02120 0.15 -1.6 489,863 + CA264_02120 0.27 -2.6 489,864 - CA264_02120 0.27 -2.0 489,869 + CA264_02120 0.28 -1.1 489,900 + CA264_02120 0.34 -1.1 489,900 + CA264_02120 0.34 -0.3 489,901 - CA264_02120 0.34 -1.3 489,901 - CA264_02120 0.34 -0.0 490,007 - CA264_02120 0.53 -1.2 490,095 + CA264_02120 0.68 -1.9 490,276 + -2.7 490,290 - -1.1 490,292 + -1.8 490,292 + -1.0 490,292 + -0.3 490,298 + -0.8 490,305 + -1.3 490,428 + -0.8 490,429 - -1.6 490,429 - -2.5 490,431 - -1.6 490,431 - +1.1 490,456 + -1.0 490,474 + -1.3 490,475 - -2.1 490,476 + -0.3 490,477 - -1.0 490,483 - -1.6 490,819 + CA264_02125 0.67 -0.8 490,832 - CA264_02125 0.69 -0.3 490,847 + CA264_02125 0.72 -1.4 490,847 + CA264_02125 0.72 -0.4 490,847 + CA264_02125 0.72 +0.2 490,848 - CA264_02125 0.72 -3.7 490,848 - CA264_02125 0.72 -2.4 490,848 - CA264_02125 0.72 -1.2 490,899 - CA264_02125 0.82 +0.2 490,928 - CA264_02125 0.87 -0.7 491,034 - -0.5 491,128 + -1.1 491,164 + -1.7 491,194 + +0.7 491,194 + -1.0 491,194 + -1.6 491,194 + -2.2 491,195 - +0.6 491,195 - -1.6 491,200 + -1.0 491,200 + -1.4 491,200 + -0.9 491,201 - -0.9 491,207 + -1.4 491,207 + -1.6 491,208 - -0.3 491,257 + +0.2 491,619 - CA264_02130 0.54 -1.6 491,619 - CA264_02130 0.54 +0.1 491,716 - CA264_02130 0.69 +0.7 491,716 - CA264_02130 0.69 -0.3 491,727 - CA264_02130 0.70 -3.5 491,727 - CA264_02130 0.70 -0.9 491,731 + CA264_02130 0.71 -1.1 491,891 + +0.7 491,919 + -0.3 491,919 + +0.2 491,919 + +0.7 491,920 - -0.6 491,920 - -1.0 491,920 - +0.4 491,920 - +1.1 491,939 - -1.5 491,939 - -2.1 491,943 - -0.6 491,952 + -1.4 491,953 - -2.3
Or see this region's nucleotide sequence