Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01160

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01155 and CA264_01160 are separated by 222 nucleotidesCA264_01160 and CA264_01165 are separated by 87 nucleotides CA264_01155: CA264_01155 - Zn-dependent protease, at 254,392 to 255,387 _01155 CA264_01160: CA264_01160 - peptidase M28 family protein, at 255,610 to 257,037 _01160 CA264_01165: CA264_01165 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 257,125 to 258,336 _01165 Position (kb) 255 256 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 254.864 kb on + strand, within CA264_01155at 255.063 kb on + strand, within CA264_01155at 255.109 kb on + strand, within CA264_01155at 255.220 kb on + strand, within CA264_01155at 255.221 kb on - strand, within CA264_01155at 255.257 kb on + strand, within CA264_01155at 255.377 kb on + strandat 255.403 kb on - strandat 255.425 kb on + strandat 255.426 kb on - strandat 255.482 kb on + strandat 255.501 kb on - strandat 255.520 kb on + strandat 255.521 kb on - strandat 255.543 kb on + strandat 255.544 kb on - strandat 255.568 kb on + strandat 255.569 kb on - strandat 255.645 kb on - strandat 255.691 kb on + strandat 255.725 kb on - strandat 255.755 kb on - strand, within CA264_01160at 255.755 kb on - strand, within CA264_01160at 256.077 kb on + strand, within CA264_01160at 256.091 kb on + strand, within CA264_01160at 256.113 kb on + strand, within CA264_01160at 256.116 kb on + strand, within CA264_01160at 256.117 kb on - strand, within CA264_01160at 256.367 kb on - strand, within CA264_01160at 256.409 kb on - strand, within CA264_01160at 256.409 kb on - strand, within CA264_01160at 256.409 kb on - strand, within CA264_01160at 256.409 kb on - strand, within CA264_01160at 256.428 kb on + strand, within CA264_01160at 256.456 kb on - strand, within CA264_01160at 256.456 kb on - strand, within CA264_01160at 256.602 kb on + strand, within CA264_01160at 256.602 kb on + strand, within CA264_01160at 256.603 kb on - strand, within CA264_01160at 256.636 kb on - strand, within CA264_01160at 256.674 kb on + strand, within CA264_01160at 256.675 kb on - strand, within CA264_01160at 256.873 kb on - strand, within CA264_01160at 256.901 kb on - strandat 256.935 kb on - strandat 256.935 kb on - strandat 256.968 kb on + strandat 256.984 kb on + strandat 256.984 kb on + strandat 256.985 kb on - strandat 257.046 kb on - strandat 257.052 kb on - strandat 257.115 kb on + strandat 257.115 kb on + strandat 257.115 kb on + strandat 257.116 kb on - strandat 257.116 kb on - strandat 257.117 kb on + strandat 257.117 kb on + strandat 257.118 kb on - strandat 257.127 kb on - strandat 257.193 kb on - strandat 257.272 kb on + strand, within CA264_01165at 257.273 kb on - strand, within CA264_01165at 257.295 kb on + strand, within CA264_01165at 257.310 kb on + strand, within CA264_01165at 257.360 kb on + strand, within CA264_01165at 257.360 kb on + strand, within CA264_01165at 257.360 kb on + strand, within CA264_01165at 257.361 kb on - strand, within CA264_01165at 257.415 kb on - strand, within CA264_01165at 257.581 kb on - strand, within CA264_01165at 257.584 kb on - strand, within CA264_01165at 257.585 kb on + strand, within CA264_01165at 257.585 kb on + strand, within CA264_01165at 257.750 kb on - strand, within CA264_01165at 257.783 kb on + strand, within CA264_01165at 257.944 kb on + strand, within CA264_01165at 257.945 kb on - strand, within CA264_01165at 257.969 kb on - strand, within CA264_01165at 257.997 kb on + strand, within CA264_01165at 257.997 kb on + strand, within CA264_01165

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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254,864 + CA264_01155 0.47 -0.7
255,063 + CA264_01155 0.67 -1.8
255,109 + CA264_01155 0.72 -3.1
255,220 + CA264_01155 0.83 -1.3
255,221 - CA264_01155 0.83 -1.6
255,257 + CA264_01155 0.87 -0.6
255,377 + -0.5
255,403 - -0.6
255,425 + -0.0
255,426 - -2.2
255,482 + -0.6
255,501 - -3.1
255,520 + -0.9
255,521 - -0.8
255,543 + -1.8
255,544 - -2.0
255,568 + -0.6
255,569 - -1.5
255,645 - -1.0
255,691 + -0.3
255,725 - -1.1
255,755 - CA264_01160 0.10 -2.4
255,755 - CA264_01160 0.10 -2.1
256,077 + CA264_01160 0.33 -0.9
256,091 + CA264_01160 0.34 -0.4
256,113 + CA264_01160 0.35 +2.3
256,116 + CA264_01160 0.35 -1.8
256,117 - CA264_01160 0.36 -0.7
256,367 - CA264_01160 0.53 -2.2
256,409 - CA264_01160 0.56 -1.4
256,409 - CA264_01160 0.56 -1.3
256,409 - CA264_01160 0.56 -0.7
256,409 - CA264_01160 0.56 -1.7
256,428 + CA264_01160 0.57 +1.1
256,456 - CA264_01160 0.59 -0.6
256,456 - CA264_01160 0.59 -0.9
256,602 + CA264_01160 0.69 -0.3
256,602 + CA264_01160 0.69 -1.5
256,603 - CA264_01160 0.70 -0.6
256,636 - CA264_01160 0.72 -0.3
256,674 + CA264_01160 0.75 +0.7
256,675 - CA264_01160 0.75 -1.8
256,873 - CA264_01160 0.88 -0.2
256,901 - -1.3
256,935 - +0.1
256,935 - -0.9
256,968 + +0.1
256,984 + -0.4
256,984 + -0.4
256,985 - +0.4
257,046 - -1.8
257,052 - -0.4
257,115 + -0.9
257,115 + +0.4
257,115 + +0.7
257,116 - -0.4
257,116 - +0.6
257,117 + +0.3
257,117 + -0.1
257,118 - +0.5
257,127 - -0.4
257,193 - +0.2
257,272 + CA264_01165 0.12 -0.3
257,273 - CA264_01165 0.12 +0.6
257,295 + CA264_01165 0.14 +0.7
257,310 + CA264_01165 0.15 -0.2
257,360 + CA264_01165 0.19 -0.1
257,360 + CA264_01165 0.19 +0.7
257,360 + CA264_01165 0.19 +0.2
257,361 - CA264_01165 0.19 +0.1
257,415 - CA264_01165 0.24 -0.2
257,581 - CA264_01165 0.38 -0.9
257,584 - CA264_01165 0.38 -0.1
257,585 + CA264_01165 0.38 -0.4
257,585 + CA264_01165 0.38 -1.8
257,750 - CA264_01165 0.52 -1.0
257,783 + CA264_01165 0.54 +0.5
257,944 + CA264_01165 0.68 -0.9
257,945 - CA264_01165 0.68 +0.6
257,969 - CA264_01165 0.70 +0.2
257,997 + CA264_01165 0.72 -0.7
257,997 + CA264_01165 0.72 +0.7

Or see this region's nucleotide sequence