Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00785 and CA264_00790 are separated by 103 nucleotides CA264_00790 and CA264_00795 are separated by 77 nucleotides CA264_00795 and CA264_00800 are separated by 434 nucleotides
CA264_00785: CA264_00785 - hypothetical protein, at 167,980 to 169,044
_00785
CA264_00790: CA264_00790 - hypothetical protein, at 169,148 to 169,693
_00790
CA264_00795: CA264_00795 - hypothetical protein, at 169,771 to 171,078
_00795
CA264_00800: CA264_00800 - hypothetical protein, at 171,513 to 172,664
_00800
Position (kb) 169
170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 168.800 kb on + strand, within CA264_00785 at 168.837 kb on - strand, within CA264_00785 at 168.837 kb on - strand, within CA264_00785 at 168.837 kb on - strand, within CA264_00785 at 168.846 kb on + strand, within CA264_00785 at 168.866 kb on + strand, within CA264_00785 at 169.016 kb on - strand at 169.016 kb on - strand at 169.030 kb on - strand at 169.030 kb on - strand at 169.030 kb on - strand at 169.033 kb on + strand at 169.033 kb on + strand at 169.033 kb on + strand at 169.122 kb on - strand at 169.122 kb on - strand at 169.122 kb on - strand at 169.122 kb on - strand at 169.123 kb on + strand at 169.123 kb on + strand at 169.124 kb on - strand at 169.124 kb on - strand at 169.124 kb on - strand at 169.124 kb on - strand at 169.124 kb on - strand at 169.146 kb on - strand at 169.149 kb on + strand at 169.150 kb on - strand at 169.154 kb on + strand at 169.157 kb on + strand at 169.157 kb on + strand at 169.158 kb on - strand at 169.176 kb on - strand at 169.176 kb on - strand at 169.192 kb on + strand at 169.247 kb on + strand, within CA264_00790 at 169.286 kb on - strand, within CA264_00790 at 169.317 kb on + strand, within CA264_00790 at 169.317 kb on + strand, within CA264_00790 at 169.317 kb on + strand, within CA264_00790 at 169.318 kb on - strand, within CA264_00790 at 169.327 kb on + strand, within CA264_00790 at 169.357 kb on - strand, within CA264_00790 at 169.427 kb on + strand, within CA264_00790 at 169.428 kb on - strand, within CA264_00790 at 169.454 kb on + strand, within CA264_00790 at 169.510 kb on - strand, within CA264_00790 at 169.559 kb on + strand, within CA264_00790 at 169.560 kb on - strand, within CA264_00790 at 169.572 kb on + strand, within CA264_00790 at 169.572 kb on + strand, within CA264_00790 at 169.573 kb on - strand, within CA264_00790 at 169.573 kb on - strand, within CA264_00790 at 169.607 kb on + strand, within CA264_00790 at 169.607 kb on + strand, within CA264_00790 at 169.678 kb on + strand at 169.714 kb on - strand at 169.717 kb on + strand at 169.721 kb on + strand at 169.721 kb on + strand at 169.721 kb on + strand at 169.721 kb on + strand at 169.722 kb on - strand at 169.722 kb on - strand at 169.722 kb on - strand at 169.726 kb on + strand at 169.727 kb on - strand at 169.727 kb on - strand at 169.728 kb on + strand at 169.728 kb on + strand at 169.728 kb on + strand at 169.729 kb on - strand at 169.729 kb on - strand at 169.730 kb on + strand at 169.731 kb on - strand at 169.731 kb on - strand at 169.731 kb on - strand at 169.731 kb on - strand at 169.773 kb on - strand at 169.773 kb on - strand at 169.773 kb on - strand at 169.791 kb on - strand at 169.804 kb on - strand at 169.816 kb on + strand at 169.897 kb on + strand at 169.898 kb on - strand at 169.898 kb on - strand at 169.898 kb on - strand at 169.973 kb on + strand, within CA264_00795 at 169.979 kb on - strand, within CA264_00795 at 169.994 kb on + strand, within CA264_00795 at 170.054 kb on + strand, within CA264_00795 at 170.070 kb on + strand, within CA264_00795 at 170.071 kb on - strand, within CA264_00795 at 170.098 kb on + strand, within CA264_00795 at 170.098 kb on + strand, within CA264_00795 at 170.166 kb on - strand, within CA264_00795 at 170.186 kb on + strand, within CA264_00795 at 170.186 kb on + strand, within CA264_00795 at 170.186 kb on + strand, within CA264_00795 at 170.187 kb on - strand, within CA264_00795 at 170.187 kb on - strand, within CA264_00795 at 170.187 kb on - strand, within CA264_00795 at 170.189 kb on + strand, within CA264_00795 at 170.224 kb on - strand, within CA264_00795 at 170.228 kb on - strand, within CA264_00795 at 170.325 kb on - strand, within CA264_00795 at 170.347 kb on - strand, within CA264_00795 at 170.347 kb on - strand, within CA264_00795 at 170.347 kb on - strand, within CA264_00795 at 170.347 kb on - strand, within CA264_00795 at 170.507 kb on + strand, within CA264_00795 at 170.508 kb on - strand, within CA264_00795 at 170.529 kb on - strand, within CA264_00795 at 170.529 kb on - strand, within CA264_00795 at 170.545 kb on + strand, within CA264_00795 at 170.546 kb on - strand, within CA264_00795 at 170.546 kb on - strand, within CA264_00795 at 170.565 kb on + strand, within CA264_00795 at 170.566 kb on - strand, within CA264_00795 at 170.575 kb on - strand, within CA264_00795 at 170.632 kb on + strand, within CA264_00795 at 170.659 kb on + strand, within CA264_00795 at 170.698 kb on + strand, within CA264_00795 at 170.699 kb on - strand, within CA264_00795 at 170.703 kb on - strand, within CA264_00795 at 170.703 kb on - strand, within CA264_00795 at 170.726 kb on + strand, within CA264_00795 at 170.763 kb on - strand, within CA264_00795 at 170.857 kb on + strand, within CA264_00795 at 170.860 kb on + strand, within CA264_00795 at 170.860 kb on + strand, within CA264_00795 at 170.860 kb on + strand, within CA264_00795 at 170.861 kb on - strand, within CA264_00795 at 170.861 kb on - strand, within CA264_00795 at 170.861 kb on - strand, within CA264_00795 at 170.932 kb on + strand, within CA264_00795 at 170.944 kb on + strand, within CA264_00795 at 170.945 kb on - strand, within CA264_00795 at 170.945 kb on - strand, within CA264_00795 at 170.992 kb on + strand at 170.993 kb on - strand at 171.003 kb on - strand at 171.033 kb on + strand at 171.045 kb on + strand at 171.053 kb on - strand at 171.053 kb on - strand at 171.053 kb on - strand at 171.053 kb on - strand at 171.054 kb on + strand at 171.081 kb on - strand at 171.091 kb on + strand at 171.092 kb on - strand at 171.158 kb on - strand at 171.162 kb on + strand at 171.162 kb on + strand at 171.163 kb on - strand at 171.163 kb on - strand at 171.183 kb on + strand at 171.314 kb on - strand at 171.314 kb on - strand at 171.315 kb on + strand at 171.316 kb on - strand at 171.316 kb on - strand at 171.316 kb on - strand at 171.317 kb on - strand at 171.379 kb on - strand at 171.388 kb on - strand at 171.388 kb on - strand at 171.408 kb on + strand at 171.475 kb on + strand at 171.476 kb on - strand at 171.506 kb on + strand at 171.515 kb on - strand at 171.537 kb on + strand at 171.537 kb on + strand at 171.537 kb on + strand at 171.538 kb on - strand at 171.538 kb on - strand at 171.538 kb on - strand at 171.540 kb on + strand at 171.547 kb on - strand at 171.556 kb on + strand at 171.556 kb on + strand at 171.556 kb on + strand at 171.591 kb on - strand at 171.591 kb on - strand at 171.613 kb on - strand at 171.642 kb on + strand, within CA264_00800 at 171.642 kb on + strand, within CA264_00800 at 171.642 kb on + strand, within CA264_00800 at 171.643 kb on - strand, within CA264_00800 at 171.643 kb on - strand, within CA264_00800 at 171.643 kb on - strand, within CA264_00800 at 171.706 kb on + strand, within CA264_00800 at 171.706 kb on + strand, within CA264_00800 at 171.706 kb on + strand, within CA264_00800 at 171.709 kb on + strand, within CA264_00800 at 171.710 kb on - strand, within CA264_00800 at 171.813 kb on + strand, within CA264_00800 at 171.814 kb on - strand, within CA264_00800 at 171.814 kb on - strand, within CA264_00800 at 171.814 kb on - strand, within CA264_00800 at 171.880 kb on + strand, within CA264_00800 at 171.909 kb on + strand, within CA264_00800 at 171.909 kb on + strand, within CA264_00800 at 171.909 kb on + strand, within CA264_00800 at 171.910 kb on - strand, within CA264_00800 at 171.910 kb on - strand, within CA264_00800 at 171.911 kb on + strand, within CA264_00800 at 171.911 kb on + strand, within CA264_00800 at 171.911 kb on + strand, within CA264_00800 at 171.911 kb on + strand, within CA264_00800 at 171.912 kb on - strand, within CA264_00800 at 171.912 kb on - strand, within CA264_00800 at 171.912 kb on - strand, within CA264_00800 at 171.943 kb on - strand, within CA264_00800 at 171.943 kb on - strand, within CA264_00800 at 171.953 kb on + strand, within CA264_00800 at 172.031 kb on + strand, within CA264_00800 at 172.031 kb on + strand, within CA264_00800 at 172.031 kb on + strand, within CA264_00800 at 172.031 kb on + strand, within CA264_00800 at 172.031 kb on + strand, within CA264_00800 at 172.032 kb on - strand, within CA264_00800 at 172.035 kb on + strand, within CA264_00800 at 172.036 kb on - strand, within CA264_00800 at 172.036 kb on - strand, within CA264_00800
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 168,800 + CA264_00785 0.77 -0.5 168,837 - CA264_00785 0.80 +0.2 168,837 - CA264_00785 0.80 +1.0 168,837 - CA264_00785 0.80 +0.7 168,846 + CA264_00785 0.81 -0.5 168,866 + CA264_00785 0.83 +0.5 169,016 - +2.4 169,016 - -1.2 169,030 - -0.0 169,030 - -0.2 169,030 - +0.7 169,033 + -2.7 169,033 + -0.2 169,033 + -0.8 169,122 - -0.6 169,122 - +0.4 169,122 - +0.3 169,122 - +0.1 169,123 + +0.2 169,123 + -0.5 169,124 - -2.7 169,124 - +1.1 169,124 - -0.8 169,124 - -0.8 169,124 - -0.6 169,146 - +0.2 169,149 + -1.3 169,150 - -0.5 169,154 + +1.8 169,157 + -1.3 169,157 + -0.0 169,158 - +1.4 169,176 - +0.3 169,176 - -0.8 169,192 + -0.7 169,247 + CA264_00790 0.18 -0.4 169,286 - CA264_00790 0.25 -0.2 169,317 + CA264_00790 0.31 +0.3 169,317 + CA264_00790 0.31 -0.3 169,317 + CA264_00790 0.31 -0.4 169,318 - CA264_00790 0.31 -1.0 169,327 + CA264_00790 0.33 -0.9 169,357 - CA264_00790 0.38 -0.3 169,427 + CA264_00790 0.51 -0.2 169,428 - CA264_00790 0.51 -0.0 169,454 + CA264_00790 0.56 -0.0 169,510 - CA264_00790 0.66 +0.8 169,559 + CA264_00790 0.75 -0.2 169,560 - CA264_00790 0.75 -0.8 169,572 + CA264_00790 0.78 +0.1 169,572 + CA264_00790 0.78 -0.8 169,573 - CA264_00790 0.78 -0.3 169,573 - CA264_00790 0.78 -0.6 169,607 + CA264_00790 0.84 -0.3 169,607 + CA264_00790 0.84 +0.2 169,678 + +0.3 169,714 - -0.2 169,717 + -0.8 169,721 + -0.6 169,721 + -1.0 169,721 + +0.5 169,721 + +0.0 169,722 - +0.1 169,722 - +0.8 169,722 - -0.4 169,726 + -1.0 169,727 - -0.2 169,727 - -0.1 169,728 + +0.1 169,728 + +0.1 169,728 + -0.2 169,729 - -2.2 169,729 - -0.6 169,730 + +0.7 169,731 - -0.5 169,731 - -0.2 169,731 - -0.2 169,731 - +0.5 169,773 - +0.3 169,773 - -0.5 169,773 - -0.8 169,791 - -2.7 169,804 - -0.6 169,816 + +0.2 169,897 + -0.0 169,898 - -1.4 169,898 - -1.3 169,898 - -0.2 169,973 + CA264_00795 0.15 +0.6 169,979 - CA264_00795 0.16 +0.1 169,994 + CA264_00795 0.17 -0.4 170,054 + CA264_00795 0.22 -0.2 170,070 + CA264_00795 0.23 -0.5 170,071 - CA264_00795 0.23 -0.3 170,098 + CA264_00795 0.25 +1.0 170,098 + CA264_00795 0.25 +0.0 170,166 - CA264_00795 0.30 -1.2 170,186 + CA264_00795 0.32 -0.1 170,186 + CA264_00795 0.32 +0.2 170,186 + CA264_00795 0.32 +0.9 170,187 - CA264_00795 0.32 +0.1 170,187 - CA264_00795 0.32 +1.6 170,187 - CA264_00795 0.32 -0.2 170,189 + CA264_00795 0.32 -0.5 170,224 - CA264_00795 0.35 -0.7 170,228 - CA264_00795 0.35 +0.1 170,325 - CA264_00795 0.42 -1.0 170,347 - CA264_00795 0.44 -1.0 170,347 - CA264_00795 0.44 -0.5 170,347 - CA264_00795 0.44 +1.6 170,347 - CA264_00795 0.44 +1.4 170,507 + CA264_00795 0.56 +0.8 170,508 - CA264_00795 0.56 -0.4 170,529 - CA264_00795 0.58 -0.2 170,529 - CA264_00795 0.58 -0.8 170,545 + CA264_00795 0.59 -0.3 170,546 - CA264_00795 0.59 +1.3 170,546 - CA264_00795 0.59 -0.3 170,565 + CA264_00795 0.61 +0.1 170,566 - CA264_00795 0.61 +0.8 170,575 - CA264_00795 0.61 +1.7 170,632 + CA264_00795 0.66 -0.3 170,659 + CA264_00795 0.68 +0.5 170,698 + CA264_00795 0.71 +0.0 170,699 - CA264_00795 0.71 +0.8 170,703 - CA264_00795 0.71 -0.2 170,703 - CA264_00795 0.71 +1.5 170,726 + CA264_00795 0.73 -0.8 170,763 - CA264_00795 0.76 +0.5 170,857 + CA264_00795 0.83 +2.1 170,860 + CA264_00795 0.83 +0.4 170,860 + CA264_00795 0.83 -0.6 170,860 + CA264_00795 0.83 -0.0 170,861 - CA264_00795 0.83 -0.2 170,861 - CA264_00795 0.83 -0.4 170,861 - CA264_00795 0.83 -1.5 170,932 + CA264_00795 0.89 +0.1 170,944 + CA264_00795 0.90 +0.3 170,945 - CA264_00795 0.90 -0.7 170,945 - CA264_00795 0.90 -0.0 170,992 + +0.6 170,993 - +2.4 171,003 - -0.0 171,033 + +0.6 171,045 + -1.2 171,053 - -0.9 171,053 - +0.3 171,053 - -0.5 171,053 - +0.8 171,054 + -0.5 171,081 - +1.1 171,091 + +1.3 171,092 - -0.1 171,158 - +0.0 171,162 + +0.3 171,162 + -0.6 171,163 - +0.8 171,163 - +0.8 171,183 + +0.5 171,314 - +0.6 171,314 - -0.3 171,315 + +0.5 171,316 - +0.8 171,316 - -0.0 171,316 - +0.1 171,317 - +1.2 171,379 - +0.5 171,388 - +0.5 171,388 - -0.8 171,408 + +0.1 171,475 + +1.8 171,476 - -0.1 171,506 + -0.3 171,515 - +0.8 171,537 + -0.8 171,537 + +0.1 171,537 + -0.2 171,538 - -0.8 171,538 - -1.0 171,538 - +0.3 171,540 + -0.7 171,547 - +0.3 171,556 + -0.5 171,556 + -0.1 171,556 + +1.8 171,591 - -0.0 171,591 - +1.0 171,613 - -0.2 171,642 + CA264_00800 0.11 +0.4 171,642 + CA264_00800 0.11 -0.4 171,642 + CA264_00800 0.11 -0.3 171,643 - CA264_00800 0.11 -0.7 171,643 - CA264_00800 0.11 -0.7 171,643 - CA264_00800 0.11 +1.6 171,706 + CA264_00800 0.17 -0.4 171,706 + CA264_00800 0.17 -1.4 171,706 + CA264_00800 0.17 +0.4 171,709 + CA264_00800 0.17 +0.6 171,710 - CA264_00800 0.17 +0.0 171,813 + CA264_00800 0.26 -0.5 171,814 - CA264_00800 0.26 -0.7 171,814 - CA264_00800 0.26 +0.1 171,814 - CA264_00800 0.26 -0.5 171,880 + CA264_00800 0.32 -0.1 171,909 + CA264_00800 0.34 -0.2 171,909 + CA264_00800 0.34 +0.1 171,909 + CA264_00800 0.34 -0.7 171,910 - CA264_00800 0.34 -1.6 171,910 - CA264_00800 0.34 -0.6 171,911 + CA264_00800 0.35 +0.0 171,911 + CA264_00800 0.35 -1.5 171,911 + CA264_00800 0.35 -0.5 171,911 + CA264_00800 0.35 +1.1 171,912 - CA264_00800 0.35 +0.0 171,912 - CA264_00800 0.35 -2.0 171,912 - CA264_00800 0.35 -0.4 171,943 - CA264_00800 0.37 -0.6 171,943 - CA264_00800 0.37 +0.1 171,953 + CA264_00800 0.38 -0.2 172,031 + CA264_00800 0.45 -0.5 172,031 + CA264_00800 0.45 +1.5 172,031 + CA264_00800 0.45 +0.3 172,031 + CA264_00800 0.45 -0.2 172,031 + CA264_00800 0.45 -0.3 172,032 - CA264_00800 0.45 +0.2 172,035 + CA264_00800 0.45 +0.9 172,036 - CA264_00800 0.45 +0.0 172,036 - CA264_00800 0.45 -0.4
Or see this region's nucleotide sequence