Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00465

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00455 and CA264_00460 are separated by 3 nucleotidesCA264_00460 and CA264_00465 are separated by 72 nucleotidesCA264_00465 and CA264_00470 are separated by 128 nucleotides CA264_00455: CA264_00455 - PorT-like protein, at 98,343 to 99,113 _00455 CA264_00460: CA264_00460 - NAD(P)-dependent oxidoreductase, at 99,117 to 99,869 _00460 CA264_00465: CA264_00465 - DNA mismatch repair protein MutT, at 99,942 to 100,340 _00465 CA264_00470: CA264_00470 - hypothetical protein, at 100,469 to 102,061 _00470 Position (kb) 99 100 101Strain fitness (log2 ratio) -1 0 1 2at 98.976 kb on + strand, within CA264_00455at 98.976 kb on + strand, within CA264_00455at 98.976 kb on + strand, within CA264_00455at 98.977 kb on - strand, within CA264_00455at 98.977 kb on - strand, within CA264_00455at 98.981 kb on + strand, within CA264_00455at 99.027 kb on + strand, within CA264_00455at 99.029 kb on + strand, within CA264_00455at 99.030 kb on - strand, within CA264_00455at 99.030 kb on - strand, within CA264_00455at 99.030 kb on - strand, within CA264_00455at 99.051 kb on + strandat 99.061 kb on - strandat 99.111 kb on + strandat 99.278 kb on + strand, within CA264_00460at 99.464 kb on - strand, within CA264_00460at 99.527 kb on + strand, within CA264_00460at 99.528 kb on - strand, within CA264_00460at 99.544 kb on + strand, within CA264_00460at 99.544 kb on + strand, within CA264_00460at 99.545 kb on - strand, within CA264_00460at 99.547 kb on - strand, within CA264_00460at 99.650 kb on - strand, within CA264_00460at 99.722 kb on - strand, within CA264_00460at 99.723 kb on + strand, within CA264_00460at 99.724 kb on - strand, within CA264_00460at 99.849 kb on - strandat 99.879 kb on + strandat 99.879 kb on + strandat 99.882 kb on - strandat 99.882 kb on - strandat 99.908 kb on + strandat 100.019 kb on - strand, within CA264_00465at 100.029 kb on + strand, within CA264_00465at 100.030 kb on - strand, within CA264_00465at 100.030 kb on - strand, within CA264_00465at 100.041 kb on + strand, within CA264_00465at 100.042 kb on - strand, within CA264_00465at 100.085 kb on - strand, within CA264_00465at 100.150 kb on + strand, within CA264_00465at 100.150 kb on + strand, within CA264_00465at 100.150 kb on + strand, within CA264_00465at 100.182 kb on + strand, within CA264_00465at 100.183 kb on - strand, within CA264_00465at 100.183 kb on - strand, within CA264_00465at 100.255 kb on + strand, within CA264_00465at 100.255 kb on + strand, within CA264_00465at 100.256 kb on - strand, within CA264_00465at 100.290 kb on + strand, within CA264_00465at 100.290 kb on + strand, within CA264_00465at 100.305 kb on + strandat 100.306 kb on - strandat 100.325 kb on + strandat 100.329 kb on + strandat 100.329 kb on + strandat 100.331 kb on + strandat 100.332 kb on - strandat 100.346 kb on + strandat 100.346 kb on + strandat 100.346 kb on + strandat 100.347 kb on - strandat 100.351 kb on + strandat 100.352 kb on - strandat 100.377 kb on + strandat 100.396 kb on + strandat 100.503 kb on - strandat 100.565 kb on - strandat 100.569 kb on + strandat 100.569 kb on + strandat 100.570 kb on - strandat 100.570 kb on - strandat 100.610 kb on - strandat 100.741 kb on + strand, within CA264_00470at 100.742 kb on - strand, within CA264_00470at 100.756 kb on - strand, within CA264_00470at 100.791 kb on - strand, within CA264_00470at 100.875 kb on - strand, within CA264_00470at 100.882 kb on - strand, within CA264_00470at 100.882 kb on - strand, within CA264_00470at 100.882 kb on - strand, within CA264_00470at 100.959 kb on + strand, within CA264_00470at 101.057 kb on + strand, within CA264_00470at 101.078 kb on - strand, within CA264_00470at 101.078 kb on - strand, within CA264_00470at 101.081 kb on + strand, within CA264_00470at 101.241 kb on + strand, within CA264_00470at 101.262 kb on + strand, within CA264_00470at 101.263 kb on - strand, within CA264_00470at 101.306 kb on + strand, within CA264_00470at 101.306 kb on + strand, within CA264_00470at 101.307 kb on - strand, within CA264_00470at 101.307 kb on - strand, within CA264_00470

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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98,976 + CA264_00455 0.82 +0.5
98,976 + CA264_00455 0.82 +0.3
98,976 + CA264_00455 0.82 +1.8
98,977 - CA264_00455 0.82 +1.6
98,977 - CA264_00455 0.82 +0.5
98,981 + CA264_00455 0.83 +0.3
99,027 + CA264_00455 0.89 +0.4
99,029 + CA264_00455 0.89 -1.6
99,030 - CA264_00455 0.89 -0.0
99,030 - CA264_00455 0.89 +0.2
99,030 - CA264_00455 0.89 +0.2
99,051 + +1.6
99,061 - +1.5
99,111 + -0.4
99,278 + CA264_00460 0.21 -0.5
99,464 - CA264_00460 0.46 +0.7
99,527 + CA264_00460 0.54 +0.3
99,528 - CA264_00460 0.55 +0.2
99,544 + CA264_00460 0.57 +0.6
99,544 + CA264_00460 0.57 -1.5
99,545 - CA264_00460 0.57 -0.8
99,547 - CA264_00460 0.57 -0.2
99,650 - CA264_00460 0.71 +0.8
99,722 - CA264_00460 0.80 -0.1
99,723 + CA264_00460 0.80 -0.8
99,724 - CA264_00460 0.81 +1.0
99,849 - -1.4
99,879 + +0.8
99,879 + +0.0
99,882 - +0.2
99,882 - +1.2
99,908 + -0.5
100,019 - CA264_00465 0.19 -0.6
100,029 + CA264_00465 0.22 +1.4
100,030 - CA264_00465 0.22 -1.2
100,030 - CA264_00465 0.22 -0.2
100,041 + CA264_00465 0.25 +0.3
100,042 - CA264_00465 0.25 -0.1
100,085 - CA264_00465 0.36 +0.4
100,150 + CA264_00465 0.52 +0.3
100,150 + CA264_00465 0.52 -1.0
100,150 + CA264_00465 0.52 -0.3
100,182 + CA264_00465 0.60 -0.2
100,183 - CA264_00465 0.60 -0.5
100,183 - CA264_00465 0.60 +0.0
100,255 + CA264_00465 0.78 +0.8
100,255 + CA264_00465 0.78 +0.4
100,256 - CA264_00465 0.79 +0.8
100,290 + CA264_00465 0.87 -1.0
100,290 + CA264_00465 0.87 +2.1
100,305 + +2.4
100,306 - +0.5
100,325 + -0.1
100,329 + -0.1
100,329 + +0.2
100,331 + +1.4
100,332 - +0.8
100,346 + -0.8
100,346 + -0.4
100,346 + -0.1
100,347 - +0.3
100,351 + +0.4
100,352 - +0.7
100,377 + -1.4
100,396 + +0.2
100,503 - +0.8
100,565 - -0.6
100,569 + +0.6
100,569 + -0.8
100,570 - -0.9
100,570 - -0.2
100,610 - +0.6
100,741 + CA264_00470 0.17 -0.0
100,742 - CA264_00470 0.17 +0.0
100,756 - CA264_00470 0.18 +0.4
100,791 - CA264_00470 0.20 -0.0
100,875 - CA264_00470 0.25 -0.6
100,882 - CA264_00470 0.26 +0.1
100,882 - CA264_00470 0.26 +1.8
100,882 - CA264_00470 0.26 -0.8
100,959 + CA264_00470 0.31 +0.2
101,057 + CA264_00470 0.37 +0.3
101,078 - CA264_00470 0.38 +0.0
101,078 - CA264_00470 0.38 -0.8
101,081 + CA264_00470 0.38 -0.2
101,241 + CA264_00470 0.48 +1.8
101,262 + CA264_00470 0.50 -0.1
101,263 - CA264_00470 0.50 +0.4
101,306 + CA264_00470 0.53 +0.4
101,306 + CA264_00470 0.53 +0.2
101,307 - CA264_00470 0.53 -0.3
101,307 - CA264_00470 0.53 +2.4

Or see this region's nucleotide sequence