Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00230 and CA264_00235 are separated by 170 nucleotides CA264_00235 and CA264_00240 overlap by 37 nucleotides CA264_00240 and CA264_00245 overlap by 4 nucleotides
CA264_00230: CA264_00230 - hypothetical protein, at 56,977 to 57,624
_00230
CA264_00235: CA264_00235 - hypothetical protein, at 57,795 to 58,112
_00235
CA264_00240: CA264_00240 - hypothetical protein, at 58,076 to 58,672
_00240
CA264_00245: CA264_00245 - hypothetical protein, at 58,669 to 59,571
_00245
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 56.841 kb on + strand at 56.842 kb on - strand at 56.866 kb on + strand at 56.867 kb on - strand at 56.867 kb on - strand at 56.874 kb on + strand at 56.874 kb on + strand at 56.875 kb on - strand at 56.877 kb on - strand at 56.927 kb on + strand at 56.983 kb on + strand at 56.984 kb on - strand at 56.984 kb on - strand at 56.987 kb on + strand at 56.987 kb on + strand at 56.997 kb on - strand at 56.997 kb on - strand at 57.030 kb on - strand at 57.044 kb on - strand, within CA264_00230 at 57.045 kb on + strand, within CA264_00230 at 57.046 kb on - strand, within CA264_00230 at 57.046 kb on - strand, within CA264_00230 at 57.102 kb on + strand, within CA264_00230 at 57.275 kb on + strand, within CA264_00230 at 57.276 kb on - strand, within CA264_00230 at 57.276 kb on - strand, within CA264_00230 at 57.276 kb on - strand, within CA264_00230 at 57.290 kb on - strand, within CA264_00230 at 57.543 kb on + strand, within CA264_00230 at 57.544 kb on - strand, within CA264_00230 at 57.544 kb on - strand, within CA264_00230 at 57.579 kb on + strand at 57.586 kb on - strand at 57.586 kb on - strand at 57.587 kb on + strand at 57.588 kb on - strand at 57.636 kb on + strand at 57.636 kb on + strand at 57.637 kb on - strand at 57.637 kb on - strand at 57.658 kb on + strand at 57.659 kb on - strand at 57.668 kb on + strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.672 kb on + strand at 57.673 kb on - strand at 57.678 kb on + strand at 57.702 kb on - strand at 57.703 kb on + strand at 57.704 kb on - strand at 57.739 kb on + strand at 57.740 kb on - strand at 57.740 kb on - strand at 57.740 kb on - strand at 57.744 kb on + strand at 57.744 kb on + strand at 57.745 kb on - strand at 57.745 kb on - strand at 57.800 kb on + strand at 57.801 kb on - strand at 57.802 kb on + strand at 57.803 kb on - strand at 57.803 kb on - strand at 57.818 kb on + strand at 57.819 kb on - strand at 57.930 kb on - strand, within CA264_00235 at 57.986 kb on + strand, within CA264_00235 at 57.987 kb on - strand, within CA264_00235 at 57.987 kb on - strand, within CA264_00235 at 58.029 kb on + strand, within CA264_00235 at 58.029 kb on + strand, within CA264_00235 at 58.030 kb on - strand, within CA264_00235 at 58.030 kb on - strand, within CA264_00235 at 58.064 kb on - strand, within CA264_00235 at 58.099 kb on - strand at 58.264 kb on + strand, within CA264_00240 at 58.321 kb on - strand, within CA264_00240 at 58.365 kb on - strand, within CA264_00240 at 58.485 kb on + strand, within CA264_00240 at 58.493 kb on + strand, within CA264_00240 at 58.522 kb on - strand, within CA264_00240 at 58.588 kb on + strand, within CA264_00240 at 58.635 kb on + strand at 58.663 kb on + strand at 58.664 kb on - strand at 58.782 kb on + strand, within CA264_00245 at 58.971 kb on + strand, within CA264_00245 at 59.002 kb on + strand, within CA264_00245 at 59.002 kb on + strand, within CA264_00245
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 56,841 + -0.7 56,842 - +0.7 56,866 + +0.2 56,867 - -0.0 56,867 - -0.5 56,874 + +0.6 56,874 + +0.3 56,875 - -0.7 56,877 - -1.2 56,927 + +0.8 56,983 + +0.3 56,984 - -0.4 56,984 - -0.5 56,987 + -0.1 56,987 + +1.1 56,997 - -0.6 56,997 - -0.8 57,030 - -1.3 57,044 - CA264_00230 0.10 -0.4 57,045 + CA264_00230 0.10 +0.0 57,046 - CA264_00230 0.11 -1.0 57,046 - CA264_00230 0.11 -0.8 57,102 + CA264_00230 0.19 +1.2 57,275 + CA264_00230 0.46 +0.8 57,276 - CA264_00230 0.46 -1.2 57,276 - CA264_00230 0.46 -1.0 57,276 - CA264_00230 0.46 -0.3 57,290 - CA264_00230 0.48 +1.0 57,543 + CA264_00230 0.87 -0.8 57,544 - CA264_00230 0.88 -1.1 57,544 - CA264_00230 0.88 -1.4 57,579 + +1.2 57,586 - -1.8 57,586 - +0.5 57,587 + -0.8 57,588 - -1.3 57,636 + +0.0 57,636 + -0.8 57,637 - +0.2 57,637 - +0.8 57,658 + +0.8 57,659 - +0.7 57,668 + +1.4 57,669 - +0.1 57,669 - -1.5 57,669 - +0.0 57,669 - +0.4 57,669 - -0.9 57,672 + -1.2 57,673 - -0.5 57,678 + +0.6 57,702 - -0.0 57,703 + +1.3 57,704 - +0.1 57,739 + -0.3 57,740 - +0.4 57,740 - -0.0 57,740 - -0.5 57,744 + +0.3 57,744 + +1.1 57,745 - +0.5 57,745 - -0.1 57,800 + -0.8 57,801 - -0.8 57,802 + -0.4 57,803 - +1.8 57,803 - -0.3 57,818 + -0.0 57,819 - +1.1 57,930 - CA264_00235 0.42 -0.1 57,986 + CA264_00235 0.60 +0.5 57,987 - CA264_00235 0.60 +1.1 57,987 - CA264_00235 0.60 -0.5 58,029 + CA264_00235 0.74 +0.5 58,029 + CA264_00235 0.74 +1.6 58,030 - CA264_00235 0.74 +1.8 58,030 - CA264_00235 0.74 -0.3 58,064 - CA264_00235 0.85 +0.6 58,099 - -1.2 58,264 + CA264_00240 0.31 +3.1 58,321 - CA264_00240 0.41 +0.7 58,365 - CA264_00240 0.48 +0.7 58,485 + CA264_00240 0.69 +0.0 58,493 + CA264_00240 0.70 -0.0 58,522 - CA264_00240 0.75 -0.1 58,588 + CA264_00240 0.86 +0.6 58,635 + -1.5 58,663 + +0.2 58,664 - +1.1 58,782 + CA264_00245 0.13 +0.3 58,971 + CA264_00245 0.33 -0.2 59,002 + CA264_00245 0.37 +0.5 59,002 + CA264_00245 0.37 +0.4
Or see this region's nucleotide sequence