Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00140 and CA264_00145 are separated by 165 nucleotides CA264_00145 and CA264_00150 are separated by 107 nucleotides CA264_00150 and CA264_00155 overlap by 59 nucleotides CA264_00155 and CA264_00160 are separated by 130 nucleotides
CA264_00140: CA264_00140 - hypothetical protein, at 36,696 to 36,908
_00140
CA264_00145: CA264_00145 - DNA mismatch repair protein MutT, at 37,074 to 37,637
_00145
CA264_00150: CA264_00150 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 37,745 to 38,551
_00150
CA264_00155: CA264_00155 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 38,493 to 38,780
_00155
CA264_00160: CA264_00160 - hypothetical protein, at 38,911 to 41,952
_00160
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 36.748 kb on + strand, within CA264_00140 at 36.749 kb on - strand, within CA264_00140 at 36.749 kb on - strand, within CA264_00140 at 36.753 kb on - strand, within CA264_00140 at 36.753 kb on - strand, within CA264_00140 at 36.773 kb on - strand, within CA264_00140 at 36.791 kb on - strand, within CA264_00140 at 36.819 kb on + strand, within CA264_00140 at 36.868 kb on + strand, within CA264_00140 at 36.920 kb on - strand at 36.932 kb on + strand at 36.932 kb on + strand at 36.933 kb on - strand at 36.933 kb on - strand at 36.933 kb on - strand at 36.933 kb on - strand at 36.934 kb on + strand at 36.935 kb on - strand at 36.965 kb on + strand at 36.965 kb on + strand at 36.965 kb on + strand at 36.966 kb on - strand at 36.966 kb on - strand at 37.023 kb on - strand at 37.059 kb on + strand at 37.068 kb on + strand at 37.068 kb on + strand at 37.068 kb on + strand at 37.068 kb on + strand at 37.068 kb on + strand at 37.068 kb on + strand at 37.069 kb on + strand at 37.069 kb on - strand at 37.069 kb on - strand at 37.069 kb on - strand at 37.069 kb on - strand at 37.074 kb on - strand at 37.142 kb on - strand, within CA264_00145 at 37.199 kb on - strand, within CA264_00145 at 37.252 kb on - strand, within CA264_00145 at 37.253 kb on + strand, within CA264_00145 at 37.253 kb on + strand, within CA264_00145 at 37.254 kb on - strand, within CA264_00145 at 37.254 kb on - strand, within CA264_00145 at 37.254 kb on - strand, within CA264_00145 at 37.254 kb on - strand, within CA264_00145 at 37.254 kb on - strand, within CA264_00145 at 37.254 kb on - strand, within CA264_00145 at 37.254 kb on - strand, within CA264_00145 at 37.257 kb on + strand, within CA264_00145 at 37.273 kb on - strand, within CA264_00145 at 37.294 kb on - strand, within CA264_00145 at 37.306 kb on + strand, within CA264_00145 at 37.307 kb on - strand, within CA264_00145 at 37.405 kb on + strand, within CA264_00145 at 37.405 kb on + strand, within CA264_00145 at 37.405 kb on + strand, within CA264_00145 at 37.405 kb on + strand, within CA264_00145 at 37.471 kb on + strand, within CA264_00145 at 37.569 kb on - strand, within CA264_00145 at 37.636 kb on - strand at 37.636 kb on - strand at 37.673 kb on + strand at 37.673 kb on + strand at 37.673 kb on + strand at 37.675 kb on + strand at 37.713 kb on + strand at 37.714 kb on - strand at 37.760 kb on + strand at 37.779 kb on - strand at 37.779 kb on - strand at 37.821 kb on + strand at 37.868 kb on - strand, within CA264_00150 at 37.871 kb on + strand, within CA264_00150 at 37.884 kb on + strand, within CA264_00150 at 37.999 kb on + strand, within CA264_00150 at 38.000 kb on + strand, within CA264_00150 at 38.000 kb on + strand, within CA264_00150 at 38.042 kb on - strand, within CA264_00150 at 38.045 kb on - strand, within CA264_00150 at 38.096 kb on + strand, within CA264_00150 at 38.119 kb on - strand, within CA264_00150 at 38.119 kb on - strand, within CA264_00150 at 38.158 kb on - strand, within CA264_00150 at 38.315 kb on + strand, within CA264_00150 at 38.358 kb on + strand, within CA264_00150 at 38.375 kb on - strand, within CA264_00150 at 38.482 kb on + strand at 38.486 kb on - strand at 38.486 kb on - strand at 38.795 kb on + strand at 38.809 kb on + strand at 38.883 kb on + strand at 39.008 kb on + strand at 39.008 kb on + strand at 39.008 kb on + strand at 39.009 kb on - strand at 39.010 kb on + strand at 39.010 kb on + strand at 39.117 kb on + strand at 39.155 kb on - strand at 39.176 kb on + strand at 39.313 kb on - strand, within CA264_00160 at 39.323 kb on + strand, within CA264_00160 at 39.368 kb on + strand, within CA264_00160 at 39.369 kb on - strand, within CA264_00160 at 39.372 kb on + strand, within CA264_00160 at 39.372 kb on + strand, within CA264_00160 at 39.372 kb on + strand, within CA264_00160 at 39.373 kb on - strand, within CA264_00160 at 39.373 kb on - strand, within CA264_00160 at 39.374 kb on + strand, within CA264_00160 at 39.375 kb on - strand, within CA264_00160 at 39.394 kb on - strand, within CA264_00160 at 39.397 kb on + strand, within CA264_00160 at 39.397 kb on + strand, within CA264_00160 at 39.397 kb on + strand, within CA264_00160 at 39.424 kb on - strand, within CA264_00160 at 39.488 kb on - strand, within CA264_00160 at 39.538 kb on + strand, within CA264_00160 at 39.539 kb on - strand, within CA264_00160
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 36,748 + CA264_00140 0.24 +0.5 36,749 - CA264_00140 0.25 -0.4 36,749 - CA264_00140 0.25 -0.3 36,753 - CA264_00140 0.27 +0.3 36,753 - CA264_00140 0.27 +0.0 36,773 - CA264_00140 0.36 -3.1 36,791 - CA264_00140 0.45 -0.2 36,819 + CA264_00140 0.58 +0.2 36,868 + CA264_00140 0.81 -0.9 36,920 - +0.0 36,932 + -0.1 36,932 + +1.0 36,933 - +0.8 36,933 - +0.1 36,933 - +0.1 36,933 - +1.0 36,934 + -0.2 36,935 - -1.6 36,965 + +0.3 36,965 + +0.5 36,965 + +0.2 36,966 - -1.5 36,966 - -0.5 37,023 - +0.4 37,059 + -0.8 37,068 + -1.2 37,068 + -0.8 37,068 + +0.8 37,068 + +0.8 37,068 + +1.8 37,068 + -0.1 37,069 + -1.7 37,069 - -0.2 37,069 - +0.3 37,069 - -0.4 37,069 - -0.2 37,074 - -0.2 37,142 - CA264_00145 0.12 -0.8 37,199 - CA264_00145 0.22 +0.6 37,252 - CA264_00145 0.32 -1.4 37,253 + CA264_00145 0.32 +0.4 37,253 + CA264_00145 0.32 -0.6 37,254 - CA264_00145 0.32 -0.2 37,254 - CA264_00145 0.32 +0.2 37,254 - CA264_00145 0.32 +0.7 37,254 - CA264_00145 0.32 -1.7 37,254 - CA264_00145 0.32 -0.5 37,254 - CA264_00145 0.32 +0.5 37,254 - CA264_00145 0.32 -0.6 37,257 + CA264_00145 0.32 -0.0 37,273 - CA264_00145 0.35 +0.1 37,294 - CA264_00145 0.39 +0.5 37,306 + CA264_00145 0.41 +0.6 37,307 - CA264_00145 0.41 -0.6 37,405 + CA264_00145 0.59 +1.4 37,405 + CA264_00145 0.59 -1.2 37,405 + CA264_00145 0.59 -1.1 37,405 + CA264_00145 0.59 -0.1 37,471 + CA264_00145 0.70 +0.0 37,569 - CA264_00145 0.88 -0.2 37,636 - +0.3 37,636 - +1.0 37,673 + +0.9 37,673 + -0.2 37,673 + +1.0 37,675 + +0.3 37,713 + -1.5 37,714 - +0.1 37,760 + -0.2 37,779 - -1.5 37,779 - -1.8 37,821 + -0.2 37,868 - CA264_00150 0.15 +1.4 37,871 + CA264_00150 0.16 -1.9 37,884 + CA264_00150 0.17 -1.1 37,999 + CA264_00150 0.31 -1.5 38,000 + CA264_00150 0.32 -1.2 38,000 + CA264_00150 0.32 -1.2 38,042 - CA264_00150 0.37 +0.6 38,045 - CA264_00150 0.37 -0.8 38,096 + CA264_00150 0.43 -1.7 38,119 - CA264_00150 0.46 -2.7 38,119 - CA264_00150 0.46 -0.2 38,158 - CA264_00150 0.51 -2.2 38,315 + CA264_00150 0.71 -0.3 38,358 + CA264_00150 0.76 -1.6 38,375 - CA264_00150 0.78 -2.5 38,482 + -1.5 38,486 - +2.4 38,486 - -0.9 38,795 + -0.7 38,809 + -0.1 38,883 + +0.2 39,008 + +0.1 39,008 + -0.1 39,008 + +0.9 39,009 - -0.2 39,010 + -0.6 39,010 + -0.2 39,117 + -0.0 39,155 - -0.4 39,176 + -0.4 39,313 - CA264_00160 0.13 +0.8 39,323 + CA264_00160 0.14 -0.4 39,368 + CA264_00160 0.15 -0.6 39,369 - CA264_00160 0.15 -0.7 39,372 + CA264_00160 0.15 -0.9 39,372 + CA264_00160 0.15 -0.7 39,372 + CA264_00160 0.15 +0.7 39,373 - CA264_00160 0.15 -0.6 39,373 - CA264_00160 0.15 -0.8 39,374 + CA264_00160 0.15 -0.9 39,375 - CA264_00160 0.15 -0.4 39,394 - CA264_00160 0.16 -0.1 39,397 + CA264_00160 0.16 +0.7 39,397 + CA264_00160 0.16 -0.2 39,397 + CA264_00160 0.16 -2.4 39,424 - CA264_00160 0.17 -1.0 39,488 - CA264_00160 0.19 -1.1 39,538 + CA264_00160 0.21 +0.8 39,539 - CA264_00160 0.21 -1.8
Or see this region's nucleotide sequence