Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00105

Experiment: m.b. Tetracycline 0.003 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_00100 and CA264_00105 are separated by 612 nucleotidesCA264_00105 and CA264_00110 overlap by 1 nucleotidesCA264_00110 and CA264_00115 are separated by 164 nucleotides CA264_00100: CA264_00100 - acetate--CoA ligase, at 25,800 to 29,657 _00100 CA264_00105: CA264_00105 - nucleotidyltransferase, at 30,270 to 32,201 _00105 CA264_00110: CA264_00110 - DNA polymerase III subunit epsilon, at 32,201 to 32,899 _00110 CA264_00115: CA264_00115 - hypothetical protein, at 33,064 to 33,564 _00115 Position (kb) 30 31 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 29.272 kb on + strandat 29.273 kb on - strandat 29.512 kb on + strandat 29.627 kb on - strandat 29.665 kb on + strandat 29.678 kb on + strandat 29.759 kb on + strandat 29.759 kb on + strandat 29.760 kb on - strandat 29.760 kb on - strandat 29.786 kb on + strandat 29.790 kb on + strandat 29.890 kb on + strandat 29.903 kb on - strandat 29.928 kb on - strandat 29.930 kb on + strandat 29.930 kb on + strandat 29.931 kb on - strandat 29.931 kb on - strandat 29.977 kb on + strandat 30.051 kb on + strandat 30.052 kb on - strandat 30.052 kb on - strandat 30.059 kb on + strandat 30.060 kb on - strandat 30.061 kb on + strandat 30.062 kb on - strandat 30.109 kb on + strandat 30.152 kb on + strandat 30.152 kb on + strandat 30.153 kb on - strandat 30.247 kb on + strandat 30.247 kb on + strandat 30.247 kb on + strandat 30.247 kb on + strandat 30.249 kb on + strandat 30.252 kb on + strandat 30.269 kb on + strandat 30.289 kb on + strandat 30.332 kb on + strandat 30.413 kb on + strandat 30.444 kb on + strandat 30.444 kb on + strandat 30.445 kb on - strandat 30.445 kb on - strandat 30.445 kb on - strandat 30.511 kb on + strand, within CA264_00105at 30.511 kb on + strand, within CA264_00105at 30.511 kb on + strand, within CA264_00105at 30.512 kb on - strand, within CA264_00105at 30.514 kb on - strand, within CA264_00105at 30.554 kb on + strand, within CA264_00105at 30.603 kb on + strand, within CA264_00105at 30.632 kb on + strand, within CA264_00105at 30.710 kb on + strand, within CA264_00105at 30.814 kb on + strand, within CA264_00105at 30.881 kb on + strand, within CA264_00105at 30.882 kb on - strand, within CA264_00105at 31.015 kb on + strand, within CA264_00105at 31.015 kb on + strand, within CA264_00105at 31.015 kb on + strand, within CA264_00105at 31.016 kb on - strand, within CA264_00105at 31.016 kb on - strand, within CA264_00105at 31.067 kb on + strand, within CA264_00105at 31.295 kb on + strand, within CA264_00105at 31.295 kb on + strand, within CA264_00105at 31.295 kb on + strand, within CA264_00105at 31.295 kb on + strand, within CA264_00105at 31.296 kb on - strand, within CA264_00105at 31.298 kb on - strand, within CA264_00105at 31.352 kb on - strand, within CA264_00105at 31.517 kb on - strand, within CA264_00105at 31.575 kb on - strand, within CA264_00105at 31.615 kb on - strand, within CA264_00105at 31.630 kb on + strand, within CA264_00105at 31.668 kb on - strand, within CA264_00105at 31.728 kb on + strand, within CA264_00105at 31.728 kb on + strand, within CA264_00105at 31.729 kb on - strand, within CA264_00105at 31.744 kb on + strand, within CA264_00105at 31.744 kb on + strand, within CA264_00105at 31.745 kb on - strand, within CA264_00105at 31.759 kb on + strand, within CA264_00105at 31.826 kb on + strand, within CA264_00105at 31.826 kb on + strand, within CA264_00105at 31.867 kb on + strand, within CA264_00105at 31.868 kb on - strand, within CA264_00105at 31.868 kb on - strand, within CA264_00105at 31.868 kb on - strand, within CA264_00105at 31.894 kb on + strand, within CA264_00105at 31.953 kb on - strand, within CA264_00105at 32.022 kb on + strandat 32.083 kb on - strandat 32.133 kb on - strandat 32.138 kb on + strandat 32.276 kb on + strand, within CA264_00110at 32.276 kb on + strand, within CA264_00110at 32.277 kb on - strand, within CA264_00110at 32.289 kb on + strand, within CA264_00110at 32.289 kb on + strand, within CA264_00110at 32.289 kb on + strand, within CA264_00110at 32.289 kb on + strand, within CA264_00110at 32.290 kb on - strand, within CA264_00110at 32.290 kb on - strand, within CA264_00110at 32.290 kb on - strand, within CA264_00110at 32.293 kb on + strand, within CA264_00110at 32.293 kb on + strand, within CA264_00110at 32.293 kb on + strand, within CA264_00110at 32.294 kb on - strand, within CA264_00110at 32.312 kb on - strand, within CA264_00110at 32.312 kb on - strand, within CA264_00110at 32.370 kb on + strand, within CA264_00110at 32.370 kb on + strand, within CA264_00110at 32.370 kb on + strand, within CA264_00110at 32.414 kb on - strand, within CA264_00110at 32.414 kb on - strand, within CA264_00110at 32.414 kb on - strand, within CA264_00110at 32.414 kb on - strand, within CA264_00110at 32.437 kb on + strand, within CA264_00110at 32.517 kb on + strand, within CA264_00110at 32.518 kb on - strand, within CA264_00110at 32.673 kb on + strand, within CA264_00110at 32.744 kb on + strand, within CA264_00110at 32.752 kb on - strand, within CA264_00110at 32.771 kb on + strand, within CA264_00110at 32.772 kb on - strand, within CA264_00110at 32.772 kb on - strand, within CA264_00110at 32.774 kb on - strand, within CA264_00110at 32.829 kb on + strand, within CA264_00110at 32.872 kb on + strandat 32.929 kb on + strandat 32.951 kb on + strandat 32.955 kb on + strandat 32.974 kb on - strandat 32.982 kb on + strandat 32.985 kb on - strandat 33.028 kb on + strandat 33.029 kb on - strandat 33.029 kb on - strandat 33.033 kb on - strandat 33.108 kb on + strandat 33.109 kb on - strandat 33.162 kb on - strand, within CA264_00115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
remove
29,272 + -0.4
29,273 - -0.8
29,512 + -0.8
29,627 - -0.5
29,665 + -0.5
29,678 + -0.8
29,759 + +0.1
29,759 + -1.1
29,760 - -1.9
29,760 - +0.0
29,786 + -2.7
29,790 + -0.5
29,890 + -0.2
29,903 - -0.2
29,928 - +1.0
29,930 + -0.3
29,930 + -0.2
29,931 - -1.4
29,931 - +0.6
29,977 + +1.6
30,051 + +0.2
30,052 - +0.0
30,052 - -0.4
30,059 + -0.3
30,060 - -1.8
30,061 + +0.2
30,062 - +0.8
30,109 + +1.9
30,152 + -2.5
30,152 + -1.0
30,153 - -0.6
30,247 + +1.2
30,247 + -0.3
30,247 + -0.5
30,247 + -1.0
30,249 + -0.2
30,252 + -0.9
30,269 + -0.3
30,289 + +0.2
30,332 + +0.2
30,413 + +0.4
30,444 + -0.0
30,444 + -0.2
30,445 - -0.5
30,445 - +0.8
30,445 - -3.0
30,511 + CA264_00105 0.12 -1.5
30,511 + CA264_00105 0.12 +0.1
30,511 + CA264_00105 0.12 +0.5
30,512 - CA264_00105 0.13 +0.1
30,514 - CA264_00105 0.13 -2.2
30,554 + CA264_00105 0.15 +2.1
30,603 + CA264_00105 0.17 -0.0
30,632 + CA264_00105 0.19 -0.6
30,710 + CA264_00105 0.23 +1.4
30,814 + CA264_00105 0.28 -0.8
30,881 + CA264_00105 0.32 +0.4
30,882 - CA264_00105 0.32 -0.5
31,015 + CA264_00105 0.39 -1.0
31,015 + CA264_00105 0.39 +0.6
31,015 + CA264_00105 0.39 +0.7
31,016 - CA264_00105 0.39 -0.2
31,016 - CA264_00105 0.39 +1.4
31,067 + CA264_00105 0.41 -1.2
31,295 + CA264_00105 0.53 -1.6
31,295 + CA264_00105 0.53 -0.3
31,295 + CA264_00105 0.53 +0.4
31,295 + CA264_00105 0.53 -0.0
31,296 - CA264_00105 0.53 -0.1
31,298 - CA264_00105 0.53 +0.2
31,352 - CA264_00105 0.56 -1.5
31,517 - CA264_00105 0.65 +1.4
31,575 - CA264_00105 0.68 -0.4
31,615 - CA264_00105 0.70 -0.4
31,630 + CA264_00105 0.70 -0.1
31,668 - CA264_00105 0.72 -0.2
31,728 + CA264_00105 0.75 -0.1
31,728 + CA264_00105 0.75 +0.3
31,729 - CA264_00105 0.76 -0.2
31,744 + CA264_00105 0.76 -0.4
31,744 + CA264_00105 0.76 +1.1
31,745 - CA264_00105 0.76 -2.2
31,759 + CA264_00105 0.77 -1.2
31,826 + CA264_00105 0.81 +0.5
31,826 + CA264_00105 0.81 -1.7
31,867 + CA264_00105 0.83 -0.5
31,868 - CA264_00105 0.83 +0.4
31,868 - CA264_00105 0.83 +3.4
31,868 - CA264_00105 0.83 -0.7
31,894 + CA264_00105 0.84 -0.6
31,953 - CA264_00105 0.87 -1.0
32,022 + -0.3
32,083 - -0.1
32,133 - -0.9
32,138 + +1.5
32,276 + CA264_00110 0.11 +0.1
32,276 + CA264_00110 0.11 -0.2
32,277 - CA264_00110 0.11 +1.4
32,289 + CA264_00110 0.13 -0.1
32,289 + CA264_00110 0.13 +1.4
32,289 + CA264_00110 0.13 +1.4
32,289 + CA264_00110 0.13 +0.8
32,290 - CA264_00110 0.13 +0.9
32,290 - CA264_00110 0.13 -1.5
32,290 - CA264_00110 0.13 -0.1
32,293 + CA264_00110 0.13 -0.8
32,293 + CA264_00110 0.13 +0.3
32,293 + CA264_00110 0.13 +0.0
32,294 - CA264_00110 0.13 +0.2
32,312 - CA264_00110 0.16 +0.0
32,312 - CA264_00110 0.16 +0.4
32,370 + CA264_00110 0.24 -0.3
32,370 + CA264_00110 0.24 -1.2
32,370 + CA264_00110 0.24 +0.4
32,414 - CA264_00110 0.30 +1.4
32,414 - CA264_00110 0.30 -0.5
32,414 - CA264_00110 0.30 -0.4
32,414 - CA264_00110 0.30 -0.6
32,437 + CA264_00110 0.34 -0.1
32,517 + CA264_00110 0.45 +0.9
32,518 - CA264_00110 0.45 -0.0
32,673 + CA264_00110 0.68 +1.2
32,744 + CA264_00110 0.78 +1.0
32,752 - CA264_00110 0.79 +0.4
32,771 + CA264_00110 0.82 -0.5
32,772 - CA264_00110 0.82 +0.6
32,772 - CA264_00110 0.82 -0.6
32,774 - CA264_00110 0.82 +0.1
32,829 + CA264_00110 0.90 +0.5
32,872 + +0.2
32,929 + -0.4
32,951 + +0.5
32,955 + +0.7
32,974 - +1.2
32,982 + +1.2
32,985 - -0.3
33,028 + +0.0
33,029 - +0.4
33,029 - -2.1
33,033 - +0.0
33,108 + -1.0
33,109 - -0.2
33,162 - CA264_00115 0.20 +0.7

Or see this region's nucleotide sequence