Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0962 and Atu8141 are separated by 334 nucleotides Atu8141 and Atu0964 are separated by 60 nucleotides Atu0964 and Atu0965 overlap by 4 nucleotides Atu0965 and Atu0966 overlap by 4 nucleotides
Atu0962: Atu0962 - hypothetical protein, at 950,974 to 951,378
Atu0962
Atu8141: Atu8141 - hypothetical protein, at 951,713 to 952,294
Atu8141
Atu0964: Atu0964 - hypothetical protein, at 952,355 to 952,993
Atu0964
Atu0965: Atu0965 - hypothetical protein, at 952,990 to 953,874
Atu0965
Atu0966: Atu0966 - hypothetical protein, at 953,871 to 954,305
Atu0966
Position (kb) 952
953 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 951.377 kb on - strand at 951.406 kb on + strand at 951.447 kb on + strand at 951.503 kb on + strand at 951.503 kb on + strand at 951.504 kb on + strand at 951.529 kb on - strand at 951.549 kb on + strand at 951.583 kb on + strand at 951.641 kb on - strand at 951.810 kb on - strand, within Atu8141 at 951.810 kb on - strand, within Atu8141 at 951.810 kb on - strand, within Atu8141 at 951.812 kb on + strand, within Atu8141 at 951.820 kb on - strand, within Atu8141 at 951.862 kb on - strand, within Atu8141 at 951.959 kb on + strand, within Atu8141 at 952.036 kb on + strand, within Atu8141 at 952.041 kb on + strand, within Atu8141 at 952.044 kb on - strand, within Atu8141 at 952.088 kb on - strand, within Atu8141 at 952.098 kb on - strand, within Atu8141 at 952.145 kb on + strand, within Atu8141 at 952.163 kb on + strand, within Atu8141 at 952.171 kb on - strand, within Atu8141 at 952.248 kb on + strand at 952.315 kb on + strand at 952.322 kb on - strand at 952.328 kb on - strand at 952.469 kb on - strand, within Atu0964 at 952.573 kb on + strand, within Atu0964 at 952.573 kb on + strand, within Atu0964 at 952.573 kb on + strand, within Atu0964 at 952.694 kb on + strand, within Atu0964 at 952.701 kb on - strand, within Atu0964 at 952.702 kb on - strand, within Atu0964 at 952.754 kb on + strand, within Atu0964 at 952.788 kb on - strand, within Atu0964 at 952.837 kb on - strand, within Atu0964 at 953.010 kb on - strand at 953.066 kb on + strand at 953.328 kb on - strand, within Atu0965 at 953.390 kb on + strand, within Atu0965 at 953.393 kb on - strand, within Atu0965 at 953.398 kb on - strand, within Atu0965 at 953.398 kb on - strand, within Atu0965 at 953.402 kb on + strand, within Atu0965 at 953.410 kb on - strand, within Atu0965 at 953.426 kb on - strand, within Atu0965 at 953.426 kb on - strand, within Atu0965 at 953.489 kb on + strand, within Atu0965 at 953.586 kb on + strand, within Atu0965 at 953.799 kb on + strand at 953.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 951,377 - -1.3 951,406 + +0.2 951,447 + -0.4 951,503 + +0.3 951,503 + +0.1 951,504 + +0.2 951,529 - -3.9 951,549 + -0.2 951,583 + +0.7 951,641 - -0.0 951,810 - Atu8141 0.17 +0.7 951,810 - Atu8141 0.17 +0.3 951,810 - Atu8141 0.17 -0.9 951,812 + Atu8141 0.17 +0.2 951,820 - Atu8141 0.18 +0.4 951,862 - Atu8141 0.26 -0.3 951,959 + Atu8141 0.42 +0.0 952,036 + Atu8141 0.55 +0.9 952,041 + Atu8141 0.56 -0.1 952,044 - Atu8141 0.57 -0.1 952,088 - Atu8141 0.64 +0.2 952,098 - Atu8141 0.66 -0.2 952,145 + Atu8141 0.74 -0.4 952,163 + Atu8141 0.77 -0.5 952,171 - Atu8141 0.79 -0.0 952,248 + +0.2 952,315 + -0.3 952,322 - -0.1 952,328 - +1.1 952,469 - Atu0964 0.18 +0.7 952,573 + Atu0964 0.34 -0.1 952,573 + Atu0964 0.34 +0.0 952,573 + Atu0964 0.34 +1.2 952,694 + Atu0964 0.53 +0.6 952,701 - Atu0964 0.54 +0.3 952,702 - Atu0964 0.54 +0.7 952,754 + Atu0964 0.62 +0.9 952,788 - Atu0964 0.68 +0.3 952,837 - Atu0964 0.75 +1.1 953,010 - -0.2 953,066 + -1.5 953,328 - Atu0965 0.38 -0.1 953,390 + Atu0965 0.45 +0.3 953,393 - Atu0965 0.46 +0.1 953,398 - Atu0965 0.46 +1.4 953,398 - Atu0965 0.46 -0.5 953,402 + Atu0965 0.47 -0.5 953,410 - Atu0965 0.47 +0.1 953,426 - Atu0965 0.49 +0.4 953,426 - Atu0965 0.49 +0.0 953,489 + Atu0965 0.56 -0.2 953,586 + Atu0965 0.67 -0.0 953,799 + -0.5 953,900 - -0.3
Or see this region's nucleotide sequence