Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0289 and Atu0290 are separated by 61 nucleotides Atu0290 and Atu0291 are separated by 426 nucleotides Atu0291 and Atu0292 are separated by 3 nucleotides
Atu0289: Atu0289 - Sun protein, at 283,635 to 284,924
Atu0289
Atu0290: Atu0290 - rare lipoprotein A, at 284,986 to 285,354
Atu0290
Atu0291: Atu0291 - hypothetical protein, at 285,781 to 286,653
Atu0291
Atu0292: Atu0292 - iron-sulfur cluster binding protein, at 286,657 to 287,637
Atu0292
Position (kb) 285
286
287 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 284.830 kb on + strand at 284.934 kb on - strand at 284.985 kb on - strand at 284.985 kb on - strand at 285.021 kb on - strand at 285.023 kb on - strand, within Atu0290 at 285.059 kb on + strand, within Atu0290 at 285.119 kb on + strand, within Atu0290 at 285.203 kb on - strand, within Atu0290 at 285.216 kb on + strand, within Atu0290 at 285.235 kb on + strand, within Atu0290 at 285.240 kb on + strand, within Atu0290 at 285.259 kb on + strand, within Atu0290 at 285.280 kb on + strand, within Atu0290 at 285.306 kb on - strand, within Atu0290 at 285.410 kb on + strand at 285.410 kb on + strand at 285.418 kb on - strand at 285.418 kb on - strand at 285.777 kb on + strand at 285.965 kb on - strand, within Atu0291 at 285.966 kb on + strand, within Atu0291 at 285.970 kb on - strand, within Atu0291 at 285.985 kb on + strand, within Atu0291 at 286.004 kb on + strand, within Atu0291 at 286.004 kb on + strand, within Atu0291 at 286.004 kb on + strand, within Atu0291 at 286.007 kb on - strand, within Atu0291 at 286.012 kb on - strand, within Atu0291 at 286.144 kb on - strand, within Atu0291 at 286.197 kb on + strand, within Atu0291 at 286.229 kb on + strand, within Atu0291 at 286.229 kb on + strand, within Atu0291 at 286.243 kb on - strand, within Atu0291 at 286.283 kb on + strand, within Atu0291 at 286.373 kb on + strand, within Atu0291 at 286.455 kb on + strand, within Atu0291 at 286.554 kb on - strand, within Atu0291 at 286.561 kb on + strand, within Atu0291 at 286.588 kb on - strand at 286.690 kb on + strand at 286.819 kb on + strand, within Atu0292 at 286.822 kb on - strand, within Atu0292 at 286.822 kb on - strand, within Atu0292 at 286.941 kb on + strand, within Atu0292 at 286.983 kb on - strand, within Atu0292 at 287.141 kb on - strand, within Atu0292 at 287.146 kb on - strand, within Atu0292 at 287.204 kb on + strand, within Atu0292 at 287.246 kb on - strand, within Atu0292 at 287.251 kb on - strand, within Atu0292 at 287.281 kb on + strand, within Atu0292 at 287.518 kb on - strand, within Atu0292 at 287.590 kb on - strand at 287.632 kb on + strand at 287.644 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 284,830 + -0.4 284,934 - +0.3 284,985 - -0.1 284,985 - +0.4 285,021 - +1.0 285,023 - Atu0290 0.10 -0.5 285,059 + Atu0290 0.20 -0.6 285,119 + Atu0290 0.36 -0.6 285,203 - Atu0290 0.59 +0.3 285,216 + Atu0290 0.62 +0.4 285,235 + Atu0290 0.67 -0.1 285,240 + Atu0290 0.69 +1.0 285,259 + Atu0290 0.74 +0.2 285,280 + Atu0290 0.80 +2.8 285,306 - Atu0290 0.87 -0.4 285,410 + -0.4 285,410 + +1.0 285,418 - -0.8 285,418 - -1.4 285,777 + -0.1 285,965 - Atu0291 0.21 -1.2 285,966 + Atu0291 0.21 -1.1 285,970 - Atu0291 0.22 -1.9 285,985 + Atu0291 0.23 -1.0 286,004 + Atu0291 0.26 -1.7 286,004 + Atu0291 0.26 -1.3 286,004 + Atu0291 0.26 -2.1 286,007 - Atu0291 0.26 -1.5 286,012 - Atu0291 0.26 -2.0 286,144 - Atu0291 0.42 -1.3 286,197 + Atu0291 0.48 -0.9 286,229 + Atu0291 0.51 -1.4 286,229 + Atu0291 0.51 -0.2 286,243 - Atu0291 0.53 -0.7 286,283 + Atu0291 0.58 +0.3 286,373 + Atu0291 0.68 -1.5 286,455 + Atu0291 0.77 -2.3 286,554 - Atu0291 0.89 -1.3 286,561 + Atu0291 0.89 -0.8 286,588 - -0.9 286,690 + +0.2 286,819 + Atu0292 0.17 -0.1 286,822 - Atu0292 0.17 +0.3 286,822 - Atu0292 0.17 -0.1 286,941 + Atu0292 0.29 -0.0 286,983 - Atu0292 0.33 +0.3 287,141 - Atu0292 0.49 -1.6 287,146 - Atu0292 0.50 -1.1 287,204 + Atu0292 0.56 -0.5 287,246 - Atu0292 0.60 +0.0 287,251 - Atu0292 0.61 +0.8 287,281 + Atu0292 0.64 +0.4 287,518 - Atu0292 0.88 -0.2 287,590 - +0.6 287,632 + +0.0 287,644 + +0.4
Or see this region's nucleotide sequence