Strain Fitness in Escherichia coli BW25113 around b4201

Experiment: 5-Hydroxymethylfurfural 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 20 mM
4,422,543	-				-0.2
4,422,565	+				+0.5
4,422,568	-	yjfY	b4199	0.11	-1.3
4,422,592	-	yjfY	b4199	0.19	+0.1
4,422,598	+	yjfY	b4199	0.21	+1.4
4,422,598	+	yjfY	b4199	0.21	-0.4
4,422,606	+	yjfY	b4199	0.24	-0.2
4,422,606	+	yjfY	b4199	0.24	+0.1
4,422,608	+	yjfY	b4199	0.25	+1.0
4,422,608	+	yjfY	b4199	0.25	+1.0
4,422,608	+	yjfY	b4199	0.25	+0.5
4,422,614	-	yjfY	b4199	0.27	+0.1
4,422,614	-	yjfY	b4199	0.27	+1.2
4,422,616	-	yjfY	b4199	0.28	-0.4
4,422,616	-	yjfY	b4199	0.28	+0.3
4,422,616	-	yjfY	b4199	0.28	-0.9
4,422,616	-	yjfY	b4199	0.28	+0.9
4,422,616	-	yjfY	b4199	0.28	-1.8
4,422,616	-	yjfY	b4199	0.28	-0.3
4,422,626	-	yjfY	b4199	0.32	+0.3
4,422,642	+	yjfY	b4199	0.37	+0.6
4,422,642	+	yjfY	b4199	0.37	+0.4
4,422,655	-	yjfY	b4199	0.42	-0.7
4,422,660	-	yjfY	b4199	0.44	+1.0
4,422,660	-	yjfY	b4199	0.44	-1.5
4,422,669	-	yjfY	b4199	0.47	-0.4
4,422,687	+	yjfY	b4199	0.54	+1.8
4,422,704	+	yjfY	b4199	0.60	+0.4
4,422,704	+	yjfY	b4199	0.60	+1.2
4,422,705	-	yjfY	b4199	0.60	+0.4
4,422,771	-	yjfY	b4199	0.84	-0.1
4,422,784	+	yjfY	b4199	0.89	+0.2
4,422,799	+				-0.5
4,422,802	-				+1.0
4,422,812	+				+0.3
4,422,814	-				-0.4
4,422,820	-				+0.7
4,422,820	-				+0.4
4,422,855	-				-1.5
4,422,855	-				-0.6
4,423,415	+	rpsF	b4200	0.69	-2.1
4,423,552	+				+0.4
4,423,552	+				-0.0
4,423,563	+				-0.4
4,423,605	+	priB	b4201	0.20	-0.7
4,423,636	+	priB	b4201	0.30	-0.2
4,423,736	+	priB	b4201	0.61	+0.4
4,423,752	+	priB	b4201	0.66	-0.6
4,423,815	+	priB	b4201	0.86	-0.6
4,424,063	+	rpsR	b4202	0.88	+0.8
4,424,065	+	rpsR	b4202	0.89	+1.4
4,424,065	+	rpsR	b4202	0.89	-0.9
4,424,065	+	rpsR	b4202	0.89	-0.6
4,424,065	+	rpsR	b4202	0.89	-1.4
4,424,065	+	rpsR	b4202	0.89	+0.2
4,424,065	+	rpsR	b4202	0.89	+1.4
4,424,099	+				-0.2
4,424,214	+	rplI	b4203	0.18	-0.9
4,424,229	+	rplI	b4203	0.22	+1.1
4,424,229	+	rplI	b4203	0.22	+0.9
4,424,229	+	rplI	b4203	0.22	-0.2
4,424,229	+	rplI	b4203	0.22	-0.2
4,424,248	+	rplI	b4203	0.26	+1.4
4,424,360	+	rplI	b4203	0.51	+0.4
4,424,427	+	rplI	b4203	0.66	-1.6
4,424,501	+	rplI	b4203	0.82	-0.2
4,424,510	+	rplI	b4203	0.84	+0.4
4,424,523	+	rplI	b4203	0.87	-0.9
4,424,525	+	rplI	b4203	0.88	+0.4
4,424,592	+				-1.4
4,424,615	+				-1.2
4,424,669	+				-0.1
4,424,676	-				+1.8
4,424,677	-				-0.1
4,424,678	+				-0.3
4,424,684	-				-2.6
4,424,684	-				+0.5
4,424,684	-				-0.1
4,424,684	-				+0.6
4,424,690	+				+1.6
4,424,690	+				-0.2
4,424,705	+				+0.0
4,424,708	-				-1.4
4,424,722	-				-0.9
4,424,723	+				+0.0
4,424,727	-				+0.4
4,424,727	-				-0.3
4,424,728	+				+1.2
4,424,728	+				+0.2
4,424,728	-				-0.9
4,424,733	+	yjfZ	b4204	0.10	-0.1
4,424,733	+	yjfZ	b4204	0.10	-0.1
4,424,733	+	yjfZ	b4204	0.10	+0.9
4,424,733	+	yjfZ	b4204	0.10	+3.0
4,424,733	+	yjfZ	b4204	0.10	+0.1
4,424,744	-	yjfZ	b4204	0.12	+0.5
4,424,747	+	yjfZ	b4204	0.12	+0.8
4,424,747	+	yjfZ	b4204	0.12	-0.6
4,424,747	+	yjfZ	b4204	0.12	+3.3
4,424,749	-	yjfZ	b4204	0.12	+0.9
4,424,755	-	yjfZ	b4204	0.13	-0.2
4,424,755	-	yjfZ	b4204	0.13	-0.1
4,424,755	-	yjfZ	b4204	0.13	+0.4
4,424,755	-	yjfZ	b4204	0.13	-0.5
4,424,755	-	yjfZ	b4204	0.13	+0.4
4,424,844	-	yjfZ	b4204	0.24	+0.4
4,424,844	-	yjfZ	b4204	0.24	-0.2
4,424,855	+	yjfZ	b4204	0.26	-0.1