Strain Fitness in Escherichia coli BW25113 around b3952

Experiment: 5-Hydroxymethylfurfural 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 20 mM
4,143,434	+	pflD	b3951	0.62	-0.2
4,143,436	-	pflD	b3951	0.62	+0.7
4,143,445	-	pflD	b3951	0.62	+1.4
4,143,445	-	pflD	b3951	0.62	-0.4
4,143,446	+	pflD	b3951	0.62	+0.3
4,143,718	+	pflD	b3951	0.74	+0.2
4,143,718	+	pflD	b3951	0.74	+1.1
4,143,776	+	pflD	b3951	0.77	-0.3
4,143,784	-	pflD	b3951	0.77	-0.2
4,143,802	-	pflD	b3951	0.78	+0.8
4,143,802	-	pflD	b3951	0.78	-0.4
4,143,853	-	pflD	b3951	0.80	-1.6
4,143,862	+	pflD	b3951	0.80	+0.6
4,143,862	+	pflD	b3951	0.80	+0.3
4,143,870	+	pflD	b3951	0.81	+0.6
4,143,870	+	pflD	b3951	0.81	-0.0
4,143,872	+	pflD	b3951	0.81	-0.6
4,143,872	-	pflD	b3951	0.81	+0.2
4,143,872	-	pflD	b3951	0.81	+1.0
4,143,883	+	pflD	b3951	0.81	-0.8
4,143,895	-	pflD	b3951	0.82	+0.1
4,144,012	+	pflD	b3951	0.87	-0.9
4,144,012	+	pflD	b3951	0.87	-0.4
4,144,019	+	pflD	b3951	0.87	-0.2
4,144,020	-	pflD	b3951	0.87	-0.3
4,144,021	+	pflD	b3951	0.87	+0.7
4,144,036	+	pflD	b3951	0.88	-1.8
4,144,039	-	pflD	b3951	0.88	+0.7
4,144,066	-	pflD	b3951	0.89	+1.2
4,144,079	+	pflD	b3951	0.90	+1.3
4,144,084	-	pflD	b3951	0.90	-0.1
4,144,086	+				+1.4
4,144,133	-				+0.7
4,144,135	+				+0.1
4,144,135	+				-0.3
4,144,162	-				-0.2
4,144,235	+				+0.4
4,144,235	+				-0.7
4,144,243	-				-1.0
4,144,243	-				+1.2
4,144,287	-				-1.8
4,144,304	-				-0.1
4,144,317	-				-0.7
4,144,317	-				-0.4
4,144,409	+	pflC	b3952	0.15	-0.9
4,144,445	-	pflC	b3952	0.19	-0.6
4,144,454	+	pflC	b3952	0.20	-0.4
4,144,454	+	pflC	b3952	0.20	+0.1
4,144,479	+	pflC	b3952	0.23	+0.6
4,144,479	+	pflC	b3952	0.23	-0.4
4,144,505	-	pflC	b3952	0.25	+1.0
4,144,592	-	pflC	b3952	0.35	-0.4
4,144,592	-	pflC	b3952	0.35	+0.7
4,144,599	+	pflC	b3952	0.36	-0.1
4,144,599	+	pflC	b3952	0.36	+0.7
4,144,709	+	pflC	b3952	0.49	+0.9
4,144,770	-	pflC	b3952	0.56	+0.8
4,144,841	+	pflC	b3952	0.64	+0.1
4,144,952	+	pflC	b3952	0.76	+0.2
4,144,983	-	pflC	b3952	0.80	+1.0
4,144,983	-	pflC	b3952	0.80	+0.8
4,145,095	-				+2.6
4,145,097	+				-1.8
4,145,097	+				+0.2
4,145,109	-				+0.7
4,145,142	-				-0.2
4,145,142	-				+0.5
4,145,142	-				+0.9
4,145,190	+				+0.2
4,145,190	+				-0.4
4,145,261	-	frwD	b3953	0.29	+0.1
4,145,263	-	frwD	b3953	0.30	+0.6
4,145,264	-	frwD	b3953	0.30	-0.4
4,145,341	-	frwD	b3953	0.53	+0.6
4,145,354	+	frwD	b3953	0.56	-1.4
4,145,354	+	frwD	b3953	0.56	-0.3
4,145,364	+	frwD	b3953	0.59	+1.6
4,145,364	+	frwD	b3953	0.59	+0.7
4,145,372	-	frwD	b3953	0.62	+0.2
4,145,398	+	frwD	b3953	0.69	+1.0
4,145,398	+	frwD	b3953	0.69	-0.6
4,145,411	-	frwD	b3953	0.73	+0.4
4,145,419	+	frwD	b3953	0.75	-0.8
4,145,452	+	frwD	b3953	0.85	+1.0
4,145,499	-				+0.3
4,145,500	-				+1.0
4,145,525	+				+0.2
4,145,612	+	yijO	b3954	0.14	+1.0
4,145,626	-	yijO	b3954	0.16	-0.3
4,145,638	+	yijO	b3954	0.17	-0.6
4,145,658	+	yijO	b3954	0.20	+1.2
4,145,658	+	yijO	b3954	0.20	-0.2
4,145,669	+	yijO	b3954	0.21	+0.6
4,145,669	+	yijO	b3954	0.21	-1.8
4,145,677	-	yijO	b3954	0.22	+0.9
4,145,697	-	yijO	b3954	0.24	+0.4
4,145,697	-	yijO	b3954	0.24	-0.5
4,145,800	-	yijO	b3954	0.37	+0.4
4,145,843	+	yijO	b3954	0.42	+0.1
4,145,853	+	yijO	b3954	0.43	-0.3
4,145,856	-	yijO	b3954	0.43	-0.1
4,145,900	+	yijO	b3954	0.48	+0.3
4,145,900	+	yijO	b3954	0.48	+0.9
4,146,038	+	yijO	b3954	0.64	-0.1
4,146,069	+	yijO	b3954	0.68	-1.0
4,146,091	-	yijO	b3954	0.71	+1.8
4,146,093	+	yijO	b3954	0.71	-0.2
4,146,137	+	yijO	b3954	0.76	+1.1
4,146,140	+	yijO	b3954	0.76	+0.9
4,146,148	+	yijO	b3954	0.77	-0.0