Strain Fitness in Escherichia coli BW25113 around b2824

Experiment: 5-Hydroxymethylfurfural 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 20 mM
2,960,337	-				-1.4
2,960,370	+				-0.4
2,960,441	+				-0.4
2,960,489	+				+0.3
2,960,523	-	ppdC	b2823	0.19	+2.1
2,960,523	-	ppdC	b2823	0.19	-0.9
2,960,535	+	ppdC	b2823	0.22	+0.2
2,960,661	+	ppdC	b2823	0.61	+0.0
2,960,726	-	ppdC	b2823	0.81	-0.4
2,960,726	-	ppdC	b2823	0.81	+0.1
2,960,736	+	ppdC	b2823	0.84	-0.3
2,960,759	-				+0.1
2,960,759	-				+0.1
2,960,974	-	ygdB	b2824	0.50	-0.2
2,961,100	+	ygdB	b2824	0.81	-1.1
2,961,100	+	ygdB	b2824	0.81	-1.9
2,961,102	-	ygdB	b2824	0.81	+1.1
2,961,141	+				+0.4
2,961,173	+				+1.1
2,961,343	-	ppdB	b2825	0.30	+0.3
2,961,469	+	ppdB	b2825	0.52	+0.1
2,961,469	+	ppdB	b2825	0.52	+1.9
2,961,483	-	ppdB	b2825	0.55	+0.1
2,961,483	-	ppdB	b2825	0.55	+0.0
2,961,493	-	ppdB	b2825	0.56	+0.7
2,961,493	-	ppdB	b2825	0.56	-0.1
2,961,518	+	ppdB	b2825	0.61	-1.0
2,961,529	-	ppdB	b2825	0.63	+1.1
2,961,529	-	ppdB	b2825	0.63	-0.4
2,961,543	-	ppdB	b2825	0.65	-0.4
2,961,543	-	ppdB	b2825	0.65	+0.1
2,961,543	-	ppdB	b2825	0.65	-0.1
2,961,664	+	ppdB	b2825	0.87	+0.1
2,961,664	+	ppdB	b2825	0.87	-0.0
2,961,794	+	ppdA	b2826	0.14	+0.3
2,961,794	+	ppdA	b2826	0.14	-0.4
2,961,832	-	ppdA	b2826	0.22	-1.2
2,961,832	-	ppdA	b2826	0.22	+0.1
2,961,852	-	ppdA	b2826	0.26	-0.2
2,961,875	+	ppdA	b2826	0.31	-0.3
2,961,875	+	ppdA	b2826	0.31	+0.9
2,961,906	+	ppdA	b2826	0.38	+0.5
2,961,918	+	ppdA	b2826	0.40	+0.4
2,961,943	+	ppdA	b2826	0.45	+1.3
2,961,943	+	ppdA	b2826	0.45	+0.7
2,961,958	+	ppdA	b2826	0.49	+0.7
2,961,958	+	ppdA	b2826	0.49	+1.1
2,961,963	+	ppdA	b2826	0.50	-0.7
2,962,113	+	ppdA	b2826	0.82	-0.0
2,962,122	-	ppdA	b2826	0.83	-1.2
2,962,130	+	ppdA	b2826	0.85	+0.7
2,962,130	+	ppdA	b2826	0.85	-0.3
2,962,149	-	ppdA	b2826	0.89	-1.2
2,962,149	-	ppdA	b2826	0.89	+2.7
2,962,151	+	ppdA	b2826	0.90	+0.7
2,962,173	-				-0.1
2,962,175	+				+1.1
2,962,175	+				-0.7
2,962,175	+				+0.1
2,962,175	+				+0.8