Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_854

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_852 and PfGW456L13_853 are separated by 124 nucleotidesPfGW456L13_853 and PfGW456L13_854 are separated by 119 nucleotidesPfGW456L13_854 and PfGW456L13_855 are separated by 463 nucleotides PfGW456L13_852 - FIG00954215: hypothetical protein, at 958,640 to 958,924 _852 PfGW456L13_853 - Glutathione S-transferase N-terminal domain protein (EC 2.5.1.18), at 959,049 to 959,708 _853 PfGW456L13_854 - Argininosuccinate lyase (EC 4.3.2.1), at 959,828 to 961,222 _854 PfGW456L13_855 - Autolysis response regulater LytR, at 961,686 to 962,432 _855 Position (kb) 959 960 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 959.005 kb on + strandat 959.005 kb on + strandat 959.006 kb on - strandat 959.006 kb on - strandat 959.006 kb on - strandat 959.006 kb on - strandat 959.007 kb on + strandat 959.007 kb on + strandat 959.007 kb on + strandat 959.008 kb on - strandat 959.008 kb on - strandat 959.078 kb on + strandat 959.078 kb on + strandat 959.078 kb on + strandat 959.078 kb on + strandat 959.082 kb on + strandat 959.082 kb on + strandat 959.082 kb on + strandat 959.082 kb on + strandat 959.082 kb on + strandat 959.082 kb on + strandat 959.083 kb on - strandat 959.083 kb on - strandat 959.083 kb on - strandat 959.083 kb on - strandat 959.083 kb on - strandat 959.083 kb on - strandat 959.083 kb on - strandat 959.085 kb on + strandat 959.085 kb on + strandat 959.085 kb on + strandat 959.085 kb on + strandat 959.085 kb on + strandat 959.085 kb on + strandat 959.085 kb on + strandat 959.085 kb on + strandat 959.085 kb on + strandat 959.085 kb on + strandat 959.085 kb on + strandat 959.085 kb on + strandat 959.086 kb on - strandat 959.086 kb on - strandat 959.086 kb on - strandat 959.086 kb on - strandat 959.086 kb on - strandat 959.086 kb on - strandat 959.086 kb on - strandat 959.086 kb on - strandat 959.086 kb on - strandat 959.137 kb on + strand, within PfGW456L13_853at 959.137 kb on + strand, within PfGW456L13_853at 959.137 kb on + strand, within PfGW456L13_853at 959.137 kb on + strand, within PfGW456L13_853at 959.145 kb on + strand, within PfGW456L13_853at 959.146 kb on - strand, within PfGW456L13_853at 959.146 kb on - strand, within PfGW456L13_853at 959.146 kb on - strand, within PfGW456L13_853at 959.146 kb on - strand, within PfGW456L13_853at 959.146 kb on - strand, within PfGW456L13_853at 959.209 kb on + strand, within PfGW456L13_853at 959.209 kb on + strand, within PfGW456L13_853at 959.210 kb on - strand, within PfGW456L13_853at 959.250 kb on + strand, within PfGW456L13_853at 959.250 kb on + strand, within PfGW456L13_853at 959.250 kb on + strand, within PfGW456L13_853at 959.250 kb on + strand, within PfGW456L13_853at 959.250 kb on + strand, within PfGW456L13_853at 959.251 kb on - strand, within PfGW456L13_853at 959.251 kb on - strand, within PfGW456L13_853at 959.251 kb on - strand, within PfGW456L13_853at 959.343 kb on + strand, within PfGW456L13_853at 959.343 kb on + strand, within PfGW456L13_853at 959.343 kb on + strand, within PfGW456L13_853at 959.343 kb on + strand, within PfGW456L13_853at 959.344 kb on - strand, within PfGW456L13_853at 959.344 kb on - strand, within PfGW456L13_853at 959.344 kb on - strand, within PfGW456L13_853at 959.344 kb on - strand, within PfGW456L13_853at 959.371 kb on - strand, within PfGW456L13_853at 959.482 kb on - strand, within PfGW456L13_853at 959.482 kb on - strand, within PfGW456L13_853at 959.482 kb on - strand, within PfGW456L13_853at 959.482 kb on - strand, within PfGW456L13_853at 959.482 kb on - strand, within PfGW456L13_853at 959.482 kb on - strandat 959.482 kb on - strand, within PfGW456L13_853at 959.482 kb on - strand, within PfGW456L13_853at 959.517 kb on + strand, within PfGW456L13_853at 959.517 kb on + strand, within PfGW456L13_853at 959.517 kb on + strand, within PfGW456L13_853at 959.517 kb on + strand, within PfGW456L13_853at 959.517 kb on + strand, within PfGW456L13_853at 959.517 kb on + strand, within PfGW456L13_853at 959.517 kb on + strand, within PfGW456L13_853at 959.518 kb on - strand, within PfGW456L13_853at 959.706 kb on + strandat 959.789 kb on + strandat 959.789 kb on + strandat 959.789 kb on + strandat 959.789 kb on + strandat 959.790 kb on - strandat 959.790 kb on - strandat 959.790 kb on - strandat 959.790 kb on - strandat 959.790 kb on - strandat 959.829 kb on + strandat 960.027 kb on + strand, within PfGW456L13_854at 960.028 kb on - strand, within PfGW456L13_854at 960.091 kb on - strand, within PfGW456L13_854at 960.091 kb on - strand, within PfGW456L13_854at 960.258 kb on + strand, within PfGW456L13_854at 960.259 kb on - strand, within PfGW456L13_854at 960.576 kb on + strand, within PfGW456L13_854at 960.577 kb on - strand, within PfGW456L13_854at 961.117 kb on - strandat 961.235 kb on - strandat 961.247 kb on + strandat 961.247 kb on + strandat 961.248 kb on - strandat 961.248 kb on - strandat 961.248 kb on - strandat 961.277 kb on + strandat 961.277 kb on + strandat 961.277 kb on + strandat 961.278 kb on - strandat 961.278 kb on - strandat 961.278 kb on - strandat 961.278 kb on - strandat 961.278 kb on - strandat 961.278 kb on - strandat 961.314 kb on + strandat 961.314 kb on + strandat 961.315 kb on - strandat 961.315 kb on - strandat 961.378 kb on - strandat 961.378 kb on - strandat 961.414 kb on + strandat 961.414 kb on + strandat 961.414 kb on + strandat 961.415 kb on - strandat 961.427 kb on + strandat 961.428 kb on - strandat 961.428 kb on - strandat 961.428 kb on - strandat 961.428 kb on - strandat 961.428 kb on - strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.462 kb on + strandat 961.463 kb on - strandat 961.463 kb on - strandat 961.463 kb on - strandat 961.463 kb on - strandat 961.463 kb on - strandat 961.464 kb on + strandat 961.464 kb on + strandat 961.464 kb on + strandat 961.464 kb on + strandat 961.464 kb on + strandat 961.465 kb on - strandat 961.465 kb on - strandat 961.465 kb on - strandat 961.465 kb on - strandat 961.465 kb on - strandat 961.484 kb on + strandat 961.484 kb on + strandat 961.484 kb on + strandat 961.485 kb on - strandat 961.485 kb on - strandat 961.485 kb on - strandat 961.485 kb on - strandat 961.485 kb on - strandat 961.485 kb on - strandat 961.485 kb on - strandat 961.492 kb on - strandat 961.605 kb on + strandat 961.605 kb on + strandat 961.605 kb on + strandat 961.606 kb on - strandat 961.643 kb on + strandat 961.643 kb on + strandat 961.643 kb on + strandat 961.643 kb on + strandat 961.643 kb on + strandat 961.644 kb on - strandat 961.644 kb on - strandat 961.649 kb on - strandat 961.685 kb on + strandat 961.685 kb on + strandat 961.685 kb on + strandat 961.685 kb on + strandat 961.686 kb on - strandat 961.686 kb on - strandat 961.761 kb on + strand, within PfGW456L13_855at 961.761 kb on + strand, within PfGW456L13_855at 961.761 kb on + strand, within PfGW456L13_855at 961.762 kb on - strand, within PfGW456L13_855at 961.762 kb on - strand, within PfGW456L13_855at 961.778 kb on + strand, within PfGW456L13_855at 961.779 kb on - strand, within PfGW456L13_855at 961.779 kb on - strand, within PfGW456L13_855at 961.833 kb on - strand, within PfGW456L13_855at 961.961 kb on - strand, within PfGW456L13_855at 961.980 kb on + strand, within PfGW456L13_855at 961.980 kb on + strand, within PfGW456L13_855at 961.981 kb on - strand, within PfGW456L13_855at 961.981 kb on - strand, within PfGW456L13_855at 961.981 kb on - strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.011 kb on + strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.012 kb on - strand, within PfGW456L13_855at 962.023 kb on + strand, within PfGW456L13_855at 962.024 kb on - strand, within PfGW456L13_855at 962.108 kb on + strand, within PfGW456L13_855at 962.108 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.163 kb on + strand, within PfGW456L13_855at 962.164 kb on - strand, within PfGW456L13_855at 962.164 kb on - strand, within PfGW456L13_855at 962.184 kb on + strand, within PfGW456L13_855at 962.184 kb on + strand, within PfGW456L13_855at 962.184 kb on + strand, within PfGW456L13_855at 962.184 kb on + strand, within PfGW456L13_855at 962.184 kb on + strand, within PfGW456L13_855at 962.184 kb on + strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855at 962.185 kb on - strand, within PfGW456L13_855

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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959,005 + +1.2
959,005 + -1.6
959,006 - -0.7
959,006 - -0.1
959,006 - +0.3
959,006 - +0.4
959,007 + +0.8
959,007 + +0.7
959,007 + +0.5
959,008 - -0.3
959,008 - -0.2
959,078 + -0.9
959,078 + +0.4
959,078 + -0.7
959,078 + +0.1
959,082 + -0.6
959,082 + +0.8
959,082 + +0.6
959,082 + +0.3
959,082 + -0.4
959,082 + +0.7
959,083 - -1.1
959,083 - +1.4
959,083 - +0.0
959,083 - -0.5
959,083 - -0.1
959,083 - -0.9
959,083 - -0.6
959,085 + +0.6
959,085 + +0.7
959,085 + -0.1
959,085 + +0.4
959,085 + +0.8
959,085 + +0.1
959,085 + -0.3
959,085 + -0.1
959,085 + +0.4
959,085 + +0.3
959,085 + -0.4
959,085 + +0.2
959,086 - +1.7
959,086 - -0.3
959,086 - +0.2
959,086 - +0.2
959,086 - +0.6
959,086 - -1.4
959,086 - +0.7
959,086 - +0.3
959,086 - +0.4
959,137 + PfGW456L13_853 0.13 -0.2
959,137 + PfGW456L13_853 0.13 +0.6
959,137 + PfGW456L13_853 0.13 -0.6
959,137 + PfGW456L13_853 0.13 -0.2
959,145 + PfGW456L13_853 0.15 +1.0
959,146 - PfGW456L13_853 0.15 +0.6
959,146 - PfGW456L13_853 0.15 -3.6
959,146 - PfGW456L13_853 0.15 -0.2
959,146 - PfGW456L13_853 0.15 +0.3
959,146 - PfGW456L13_853 0.15 -0.6
959,209 + PfGW456L13_853 0.24 -0.8
959,209 + PfGW456L13_853 0.24 -0.7
959,210 - PfGW456L13_853 0.24 +0.9
959,250 + PfGW456L13_853 0.30 +0.7
959,250 + PfGW456L13_853 0.30 +0.5
959,250 + PfGW456L13_853 0.30 +0.5
959,250 + PfGW456L13_853 0.30 +1.1
959,250 + PfGW456L13_853 0.30 -1.4
959,251 - PfGW456L13_853 0.31 +0.8
959,251 - PfGW456L13_853 0.31 +0.2
959,251 - PfGW456L13_853 0.31 -0.8
959,343 + PfGW456L13_853 0.45 +0.6
959,343 + PfGW456L13_853 0.45 +0.1
959,343 + PfGW456L13_853 0.45 +0.2
959,343 + PfGW456L13_853 0.45 -1.8
959,344 - PfGW456L13_853 0.45 -0.2
959,344 - PfGW456L13_853 0.45 -0.8
959,344 - PfGW456L13_853 0.45 -0.2
959,344 - PfGW456L13_853 0.45 +0.6
959,371 - PfGW456L13_853 0.49 -0.8
959,482 - PfGW456L13_853 0.66 -0.1
959,482 - PfGW456L13_853 0.66 -0.9
959,482 - PfGW456L13_853 0.66 -0.2
959,482 - PfGW456L13_853 0.66 -1.3
959,482 - PfGW456L13_853 0.66 +1.2
959,482 - +2.2
959,482 - PfGW456L13_853 0.66 -0.9
959,482 - PfGW456L13_853 0.66 -0.5
959,517 + PfGW456L13_853 0.71 -2.1
959,517 + PfGW456L13_853 0.71 -2.2
959,517 + PfGW456L13_853 0.71 +0.0
959,517 + PfGW456L13_853 0.71 +0.4
959,517 + PfGW456L13_853 0.71 -0.2
959,517 + PfGW456L13_853 0.71 -0.5
959,517 + PfGW456L13_853 0.71 -0.0
959,518 - PfGW456L13_853 0.71 +0.9
959,706 + -0.5
959,789 + +0.1
959,789 + -0.2
959,789 + +0.4
959,789 + -0.3
959,790 - -0.6
959,790 - +0.5
959,790 - -0.7
959,790 - -0.4
959,790 - +0.6
959,829 + -0.5
960,027 + PfGW456L13_854 0.14 -1.0
960,028 - PfGW456L13_854 0.14 -3.2
960,091 - PfGW456L13_854 0.19 -1.4
960,091 - PfGW456L13_854 0.19 -3.1
960,258 + PfGW456L13_854 0.31 -1.4
960,259 - PfGW456L13_854 0.31 -2.0
960,576 + PfGW456L13_854 0.54 -1.8
960,577 - PfGW456L13_854 0.54 -2.7
961,117 - -2.8
961,235 - -0.4
961,247 + -2.5
961,247 + -3.3
961,248 - +0.2
961,248 - +0.2
961,248 - +0.1
961,277 + +0.2
961,277 + -2.7
961,277 + -1.7
961,278 - -0.6
961,278 - -0.2
961,278 - +0.3
961,278 - -0.6
961,278 - -1.0
961,278 - -0.9
961,314 + -1.1
961,314 + -1.2
961,315 - +0.6
961,315 - -0.2
961,378 - -1.6
961,378 - +0.4
961,414 + -0.9
961,414 + +0.6
961,414 + -1.0
961,415 - -0.2
961,427 + -1.3
961,428 - +0.6
961,428 - -0.1
961,428 - -0.5
961,428 - +0.2
961,428 - -0.7
961,462 + -0.9
961,462 + -1.3
961,462 + -2.4
961,462 + -1.9
961,462 + -0.2
961,462 + -2.2
961,462 + +0.0
961,462 + -2.1
961,462 + -0.8
961,463 - -0.3
961,463 - -0.1
961,463 - -0.4
961,463 - -0.3
961,463 - -0.1
961,464 + +0.3
961,464 + -2.1
961,464 + -1.1
961,464 + -0.5
961,464 + -0.6
961,465 - -0.1
961,465 - -0.5
961,465 - -0.4
961,465 - +1.0
961,465 - +0.5
961,484 + -1.9
961,484 + -1.9
961,484 + -1.0
961,485 - +0.3
961,485 - +0.2
961,485 - -0.2
961,485 - -0.7
961,485 - +1.4
961,485 - -1.6
961,485 - -0.2
961,492 - +0.2
961,605 + -0.2
961,605 + -0.9
961,605 + -0.0
961,606 - +0.5
961,643 + +0.7
961,643 + -0.8
961,643 + -0.8
961,643 + -0.8
961,643 + +0.7
961,644 - +1.2
961,644 - -0.2
961,649 - -1.0
961,685 + -1.8
961,685 + -0.7
961,685 + -0.1
961,685 + +0.3
961,686 - -0.5
961,686 - -0.7
961,761 + PfGW456L13_855 0.10 -0.8
961,761 + PfGW456L13_855 0.10 +0.2
961,761 + PfGW456L13_855 0.10 -0.6
961,762 - PfGW456L13_855 0.10 +0.4
961,762 - PfGW456L13_855 0.10 +0.6
961,778 + PfGW456L13_855 0.12 -0.9
961,779 - PfGW456L13_855 0.12 -1.1
961,779 - PfGW456L13_855 0.12 +0.4
961,833 - PfGW456L13_855 0.20 +0.2
961,961 - PfGW456L13_855 0.37 -0.6
961,980 + PfGW456L13_855 0.39 -3.4
961,980 + PfGW456L13_855 0.39 +1.3
961,981 - PfGW456L13_855 0.39 -0.2
961,981 - PfGW456L13_855 0.39 -0.4
961,981 - PfGW456L13_855 0.39 -1.4
962,011 + PfGW456L13_855 0.44 -1.0
962,011 + PfGW456L13_855 0.44 +0.0
962,011 + PfGW456L13_855 0.44 +0.7
962,011 + PfGW456L13_855 0.44 -0.8
962,011 + PfGW456L13_855 0.44 +2.1
962,011 + PfGW456L13_855 0.44 -0.8
962,011 + PfGW456L13_855 0.44 -0.9
962,011 + PfGW456L13_855 0.44 -0.7
962,011 + PfGW456L13_855 0.44 -0.4
962,011 + PfGW456L13_855 0.44 +0.5
962,011 + PfGW456L13_855 0.44 -0.2
962,012 - PfGW456L13_855 0.44 +0.5
962,012 - PfGW456L13_855 0.44 -0.2
962,012 - PfGW456L13_855 0.44 +0.0
962,012 - PfGW456L13_855 0.44 -1.2
962,012 - PfGW456L13_855 0.44 -1.8
962,012 - PfGW456L13_855 0.44 +0.2
962,012 - PfGW456L13_855 0.44 +0.2
962,012 - PfGW456L13_855 0.44 +0.4
962,012 - PfGW456L13_855 0.44 -0.7
962,023 + PfGW456L13_855 0.45 -0.8
962,024 - PfGW456L13_855 0.45 -0.4
962,108 + PfGW456L13_855 0.56 +1.7
962,108 + PfGW456L13_855 0.56 -0.6
962,163 + PfGW456L13_855 0.64 +0.2
962,163 + PfGW456L13_855 0.64 +0.1
962,163 + PfGW456L13_855 0.64 -1.0
962,163 + PfGW456L13_855 0.64 -1.3
962,163 + PfGW456L13_855 0.64 -0.0
962,163 + PfGW456L13_855 0.64 -0.6
962,163 + PfGW456L13_855 0.64 -1.7
962,163 + PfGW456L13_855 0.64 -1.1
962,163 + PfGW456L13_855 0.64 -0.2
962,163 + PfGW456L13_855 0.64 +0.6
962,164 - PfGW456L13_855 0.64 -1.0
962,164 - PfGW456L13_855 0.64 -1.3
962,184 + PfGW456L13_855 0.67 -0.3
962,184 + PfGW456L13_855 0.67 -1.7
962,184 + PfGW456L13_855 0.67 -0.0
962,184 + PfGW456L13_855 0.67 -1.2
962,184 + PfGW456L13_855 0.67 +0.1
962,184 + PfGW456L13_855 0.67 -0.2
962,185 - PfGW456L13_855 0.67 -1.0
962,185 - PfGW456L13_855 0.67 +1.1
962,185 - PfGW456L13_855 0.67 -1.8
962,185 - PfGW456L13_855 0.67 -1.2
962,185 - PfGW456L13_855 0.67 -0.5
962,185 - PfGW456L13_855 0.67 -0.4
962,185 - PfGW456L13_855 0.67 -0.8
962,185 - PfGW456L13_855 0.67 -0.4
962,185 - PfGW456L13_855 0.67 -1.0
962,185 - PfGW456L13_855 0.67 -0.9
962,185 - PfGW456L13_855 0.67 +2.0
962,185 - PfGW456L13_855 0.67 -0.0
962,185 - PfGW456L13_855 0.67 -2.1
962,185 - PfGW456L13_855 0.67 -2.6
962,185 - PfGW456L13_855 0.67 -1.4
962,185 - PfGW456L13_855 0.67 -0.8

Or see this region's nucleotide sequence