Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5082

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5080 and PfGW456L13_5081 overlap by 4 nucleotidesPfGW456L13_5081 and PfGW456L13_5082 are separated by 243 nucleotidesPfGW456L13_5082 and PfGW456L13_5083 are separated by 131 nucleotidesPfGW456L13_5083 and PfGW456L13_5241 are separated by 334 nucleotidesPfGW456L13_5241 and PfGW456L13_5084 are separated by 139 nucleotides PfGW456L13_5080 - AmpE protein, at 5,667,667 to 5,668,503 _5080 PfGW456L13_5081 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD, at 5,668,500 to 5,669,060 _5081 PfGW456L13_5082 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 5,669,304 to 5,670,152 _5082 PfGW456L13_5083 - FIG00957702: hypothetical protein, at 5,670,284 to 5,670,589 _5083 PfGW456L13_5241 - tRNA-Thr-CGT, at 5,670,924 to 5,670,996 _5241 PfGW456L13_5084 - Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8), at 5,671,136 to 5,673,241 _5084 Position (kb) 5669 5670 5671Strain fitness (log2 ratio) -3 -2 -1 0 1at 5668.534 kb on + strandat 5669.060 kb on + strandat 5669.084 kb on + strandat 5669.084 kb on + strandat 5669.084 kb on + strandat 5669.084 kb on + strandat 5669.084 kb on + strandat 5669.084 kb on + strandat 5669.085 kb on - strandat 5669.085 kb on - strandat 5669.085 kb on - strandat 5669.095 kb on + strandat 5669.095 kb on + strandat 5669.095 kb on + strandat 5669.096 kb on - strandat 5669.096 kb on - strandat 5669.096 kb on - strandat 5669.096 kb on - strandat 5669.096 kb on - strandat 5669.106 kb on - strandat 5669.162 kb on + strandat 5669.162 kb on + strandat 5669.162 kb on + strandat 5669.162 kb on + strandat 5669.162 kb on + strandat 5669.162 kb on + strandat 5669.162 kb on + strandat 5669.162 kb on + strandat 5669.162 kb on + strandat 5669.163 kb on - strandat 5669.163 kb on - strandat 5669.163 kb on - strandat 5669.163 kb on - strandat 5669.163 kb on - strandat 5669.163 kb on - strandat 5669.212 kb on + strandat 5669.212 kb on + strandat 5669.213 kb on - strandat 5669.213 kb on - strandat 5669.213 kb on - strandat 5669.232 kb on + strandat 5669.271 kb on + strandat 5669.272 kb on - strandat 5669.272 kb on - strandat 5669.272 kb on - strandat 5669.273 kb on + strandat 5669.273 kb on + strandat 5669.274 kb on - strandat 5669.274 kb on - strandat 5669.314 kb on + strandat 5669.314 kb on + strandat 5669.314 kb on + strandat 5669.314 kb on + strandat 5669.315 kb on - strandat 5669.315 kb on - strandat 5669.664 kb on + strand, within PfGW456L13_5082at 5669.665 kb on - strand, within PfGW456L13_5082at 5669.748 kb on + strand, within PfGW456L13_5082at 5669.749 kb on - strand, within PfGW456L13_5082at 5669.775 kb on - strand, within PfGW456L13_5082at 5669.793 kb on + strand, within PfGW456L13_5082at 5669.794 kb on - strand, within PfGW456L13_5082at 5669.794 kb on - strand, within PfGW456L13_5082at 5670.050 kb on + strand, within PfGW456L13_5082at 5670.050 kb on + strand, within PfGW456L13_5082at 5670.050 kb on + strand, within PfGW456L13_5082at 5670.050 kb on + strand, within PfGW456L13_5082at 5670.050 kb on + strand, within PfGW456L13_5082at 5670.050 kb on + strand, within PfGW456L13_5082at 5670.051 kb on - strand, within PfGW456L13_5082at 5670.051 kb on - strand, within PfGW456L13_5082at 5670.051 kb on - strand, within PfGW456L13_5082at 5670.051 kb on - strand, within PfGW456L13_5082at 5670.051 kb on - strand, within PfGW456L13_5082at 5670.051 kb on - strand, within PfGW456L13_5082at 5670.051 kb on - strand, within PfGW456L13_5082at 5670.084 kb on + strandat 5670.084 kb on + strandat 5670.084 kb on + strandat 5670.085 kb on - strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.160 kb on + strandat 5670.161 kb on - strandat 5670.161 kb on - strandat 5670.161 kb on - strandat 5670.161 kb on - strandat 5670.161 kb on - strandat 5670.161 kb on - strandat 5670.161 kb on - strandat 5670.161 kb on - strandat 5670.161 kb on - strandat 5670.161 kb on - strandat 5670.180 kb on + strandat 5670.180 kb on + strandat 5670.180 kb on + strandat 5670.203 kb on + strandat 5670.203 kb on + strandat 5670.204 kb on - strandat 5670.230 kb on - strandat 5670.230 kb on - strandat 5670.230 kb on - strandat 5670.274 kb on + strandat 5670.274 kb on + strandat 5670.274 kb on + strandat 5670.274 kb on + strandat 5670.274 kb on + strandat 5670.274 kb on + strandat 5670.274 kb on + strandat 5670.274 kb on + strandat 5670.275 kb on - strandat 5670.275 kb on - strandat 5670.275 kb on - strandat 5670.275 kb on - strandat 5670.312 kb on + strandat 5670.399 kb on + strand, within PfGW456L13_5083at 5670.399 kb on + strand, within PfGW456L13_5083at 5670.399 kb on + strand, within PfGW456L13_5083at 5670.399 kb on + strand, within PfGW456L13_5083at 5670.399 kb on + strand, within PfGW456L13_5083at 5670.399 kb on + strand, within PfGW456L13_5083at 5670.400 kb on - strand, within PfGW456L13_5083at 5670.400 kb on - strand, within PfGW456L13_5083at 5670.400 kb on - strand, within PfGW456L13_5083at 5670.400 kb on - strand, within PfGW456L13_5083at 5670.400 kb on - strand, within PfGW456L13_5083at 5670.400 kb on - strand, within PfGW456L13_5083at 5670.400 kb on - strand, within PfGW456L13_5083at 5670.534 kb on + strand, within PfGW456L13_5083at 5670.534 kb on + strand, within PfGW456L13_5083at 5670.534 kb on + strand, within PfGW456L13_5083at 5670.534 kb on + strand, within PfGW456L13_5083at 5670.534 kb on + strand, within PfGW456L13_5083at 5670.534 kb on + strand, within PfGW456L13_5083at 5670.534 kb on + strand, within PfGW456L13_5083at 5670.534 kb on + strand, within PfGW456L13_5083at 5670.534 kb on + strand, within PfGW456L13_5083at 5670.534 kb on + strand, within PfGW456L13_5083at 5670.534 kb on + strand, within PfGW456L13_5083at 5670.534 kb on - strand, within PfGW456L13_5083at 5670.535 kb on - strand, within PfGW456L13_5083at 5670.535 kb on - strand, within PfGW456L13_5083at 5670.535 kb on - strand, within PfGW456L13_5083at 5670.535 kb on - strand, within PfGW456L13_5083at 5670.535 kb on - strand, within PfGW456L13_5083at 5670.535 kb on - strand, within PfGW456L13_5083at 5670.535 kb on - strand, within PfGW456L13_5083at 5670.535 kb on - strand, within PfGW456L13_5083at 5670.674 kb on + strandat 5670.674 kb on + strandat 5670.674 kb on + strandat 5670.674 kb on + strandat 5670.675 kb on - strandat 5670.676 kb on + strandat 5670.676 kb on + strandat 5670.676 kb on + strandat 5670.676 kb on + strandat 5670.677 kb on - strandat 5670.677 kb on - strandat 5670.677 kb on - strandat 5670.677 kb on - strandat 5670.677 kb on - strandat 5670.742 kb on - strandat 5670.742 kb on - strandat 5670.743 kb on + strandat 5670.743 kb on + strandat 5670.743 kb on + strandat 5670.743 kb on + strandat 5670.764 kb on + strandat 5670.765 kb on - strandat 5670.765 kb on - strandat 5670.765 kb on - strandat 5670.776 kb on + strandat 5670.776 kb on + strandat 5670.776 kb on + strandat 5670.776 kb on + strandat 5670.777 kb on - strandat 5670.829 kb on + strandat 5670.829 kb on + strandat 5670.829 kb on + strandat 5670.829 kb on + strandat 5670.829 kb on + strandat 5670.830 kb on - strandat 5670.830 kb on - strandat 5670.976 kb on + strand, within PfGW456L13_5241at 5670.988 kb on + strand, within PfGW456L13_5241at 5670.989 kb on - strandat 5671.010 kb on + strandat 5671.010 kb on + strandat 5671.011 kb on - strandat 5671.011 kb on - strandat 5671.058 kb on + strandat 5671.058 kb on + strandat 5671.059 kb on - strandat 5671.059 kb on - strandat 5671.059 kb on - strandat 5671.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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5,668,534 + +0.2
5,669,060 + +0.2
5,669,084 + +0.8
5,669,084 + +0.2
5,669,084 + -0.4
5,669,084 + -0.1
5,669,084 + -1.9
5,669,084 + +0.1
5,669,085 - +0.9
5,669,085 - +1.1
5,669,085 - +1.2
5,669,095 + -0.5
5,669,095 + +1.0
5,669,095 + +0.2
5,669,096 - -0.1
5,669,096 - +0.7
5,669,096 - -0.6
5,669,096 - +1.0
5,669,096 - -0.1
5,669,106 - +0.2
5,669,162 + +0.1
5,669,162 + +0.0
5,669,162 + +0.4
5,669,162 + +0.6
5,669,162 + +0.2
5,669,162 + -1.1
5,669,162 + +0.7
5,669,162 + -0.2
5,669,162 + +0.4
5,669,163 - -0.4
5,669,163 - +0.9
5,669,163 - +0.9
5,669,163 - +1.2
5,669,163 - -0.7
5,669,163 - +0.5
5,669,212 + +0.4
5,669,212 + +0.2
5,669,213 - +0.9
5,669,213 - +0.1
5,669,213 - +0.4
5,669,232 + +0.9
5,669,271 + +0.1
5,669,272 - +0.7
5,669,272 - -1.6
5,669,272 - +0.2
5,669,273 + -0.4
5,669,273 + -0.3
5,669,274 - -2.5
5,669,274 - -0.9
5,669,314 + +0.2
5,669,314 + -2.2
5,669,314 + -3.0
5,669,314 + +1.2
5,669,315 - -1.3
5,669,315 - -1.0
5,669,664 + PfGW456L13_5082 0.42 -0.6
5,669,665 - PfGW456L13_5082 0.43 -2.3
5,669,748 + PfGW456L13_5082 0.52 -1.9
5,669,749 - PfGW456L13_5082 0.52 -1.8
5,669,775 - PfGW456L13_5082 0.55 -1.0
5,669,793 + PfGW456L13_5082 0.58 -2.5
5,669,794 - PfGW456L13_5082 0.58 +0.2
5,669,794 - PfGW456L13_5082 0.58 -2.3
5,670,050 + PfGW456L13_5082 0.88 -1.8
5,670,050 + PfGW456L13_5082 0.88 -1.5
5,670,050 + PfGW456L13_5082 0.88 -1.1
5,670,050 + PfGW456L13_5082 0.88 -0.3
5,670,050 + PfGW456L13_5082 0.88 -2.8
5,670,050 + PfGW456L13_5082 0.88 -0.8
5,670,051 - PfGW456L13_5082 0.88 +0.5
5,670,051 - PfGW456L13_5082 0.88 -2.0
5,670,051 - PfGW456L13_5082 0.88 -1.7
5,670,051 - PfGW456L13_5082 0.88 +0.8
5,670,051 - PfGW456L13_5082 0.88 -2.5
5,670,051 - PfGW456L13_5082 0.88 +0.5
5,670,051 - PfGW456L13_5082 0.88 -1.8
5,670,084 + -2.1
5,670,084 + -0.2
5,670,084 + -0.5
5,670,085 - -1.6
5,670,160 + -0.6
5,670,160 + +0.7
5,670,160 + +0.1
5,670,160 + -1.1
5,670,160 + -1.3
5,670,160 + -0.8
5,670,160 + -0.3
5,670,160 + -0.7
5,670,160 + -0.3
5,670,160 + +0.5
5,670,160 + -0.2
5,670,160 + -1.7
5,670,160 + +0.6
5,670,160 + -1.8
5,670,161 - -0.2
5,670,161 - +0.0
5,670,161 - +0.7
5,670,161 - +1.1
5,670,161 - +0.4
5,670,161 - -1.6
5,670,161 - +0.2
5,670,161 - -0.5
5,670,161 - -0.1
5,670,161 - -0.5
5,670,180 + -1.1
5,670,180 + -0.9
5,670,180 + +0.3
5,670,203 + -1.0
5,670,203 + +1.1
5,670,204 - -1.1
5,670,230 - -0.3
5,670,230 - +1.1
5,670,230 - -0.3
5,670,274 + -0.6
5,670,274 + -0.6
5,670,274 + +0.3
5,670,274 + -0.5
5,670,274 + -0.3
5,670,274 + +0.2
5,670,274 + -0.2
5,670,274 + -0.1
5,670,275 - -0.4
5,670,275 - -0.0
5,670,275 - -0.7
5,670,275 - -0.4
5,670,312 + -1.0
5,670,399 + PfGW456L13_5083 0.38 +0.5
5,670,399 + PfGW456L13_5083 0.38 +0.6
5,670,399 + PfGW456L13_5083 0.38 -0.6
5,670,399 + PfGW456L13_5083 0.38 +0.6
5,670,399 + PfGW456L13_5083 0.38 -2.3
5,670,399 + PfGW456L13_5083 0.38 +0.0
5,670,400 - PfGW456L13_5083 0.38 +0.1
5,670,400 - PfGW456L13_5083 0.38 -1.6
5,670,400 - PfGW456L13_5083 0.38 -0.0
5,670,400 - PfGW456L13_5083 0.38 -0.8
5,670,400 - PfGW456L13_5083 0.38 -0.4
5,670,400 - PfGW456L13_5083 0.38 -0.1
5,670,400 - PfGW456L13_5083 0.38 +0.2
5,670,534 + PfGW456L13_5083 0.82 +1.7
5,670,534 + PfGW456L13_5083 0.82 +0.5
5,670,534 + PfGW456L13_5083 0.82 +0.2
5,670,534 + PfGW456L13_5083 0.82 -1.0
5,670,534 + PfGW456L13_5083 0.82 -0.2
5,670,534 + PfGW456L13_5083 0.82 +0.6
5,670,534 + PfGW456L13_5083 0.82 -1.1
5,670,534 + PfGW456L13_5083 0.82 +0.2
5,670,534 + PfGW456L13_5083 0.82 -0.0
5,670,534 + PfGW456L13_5083 0.82 +0.8
5,670,534 + PfGW456L13_5083 0.82 -0.1
5,670,534 - PfGW456L13_5083 0.82 -0.1
5,670,535 - PfGW456L13_5083 0.82 +0.6
5,670,535 - PfGW456L13_5083 0.82 -0.0
5,670,535 - PfGW456L13_5083 0.82 +0.2
5,670,535 - PfGW456L13_5083 0.82 +1.1
5,670,535 - PfGW456L13_5083 0.82 -0.4
5,670,535 - PfGW456L13_5083 0.82 +0.8
5,670,535 - PfGW456L13_5083 0.82 +0.1
5,670,535 - PfGW456L13_5083 0.82 -0.4
5,670,674 + +0.7
5,670,674 + -0.1
5,670,674 + +0.1
5,670,674 + -0.0
5,670,675 - +0.2
5,670,676 + +0.2
5,670,676 + -0.2
5,670,676 + +0.5
5,670,676 + -0.1
5,670,677 - -1.2
5,670,677 - -0.2
5,670,677 - -1.8
5,670,677 - +0.6
5,670,677 - +0.1
5,670,742 - -0.9
5,670,742 - +0.1
5,670,743 + -0.5
5,670,743 + +1.4
5,670,743 + +0.4
5,670,743 + +0.4
5,670,764 + +0.2
5,670,765 - +1.7
5,670,765 - +0.1
5,670,765 - +0.0
5,670,776 + -2.8
5,670,776 + -0.9
5,670,776 + +0.1
5,670,776 + -0.4
5,670,777 - -0.1
5,670,829 + -1.3
5,670,829 + -0.7
5,670,829 + -0.3
5,670,829 + -0.3
5,670,829 + -0.4
5,670,830 - -0.6
5,670,830 - +0.4
5,670,976 + PfGW456L13_5241 0.71 -0.2
5,670,988 + PfGW456L13_5241 0.88 +1.5
5,670,989 - +0.4
5,671,010 + -0.7
5,671,010 + -0.0
5,671,011 - +0.1
5,671,011 - +0.1
5,671,058 + +0.5
5,671,058 + -1.8
5,671,059 - +0.7
5,671,059 - -0.2
5,671,059 - -0.9
5,671,106 - -1.6

Or see this region's nucleotide sequence