Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5080 and PfGW456L13_5081 overlap by 4 nucleotides PfGW456L13_5081 and PfGW456L13_5082 are separated by 243 nucleotides PfGW456L13_5082 and PfGW456L13_5083 are separated by 131 nucleotides PfGW456L13_5083 and PfGW456L13_5241 are separated by 334 nucleotides PfGW456L13_5241 and PfGW456L13_5084 are separated by 139 nucleotides
PfGW456L13_5080 - AmpE protein, at 5,667,667 to 5,668,503
_5080
PfGW456L13_5081 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD, at 5,668,500 to 5,669,060
_5081
PfGW456L13_5082 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 5,669,304 to 5,670,152
_5082
PfGW456L13_5083 - FIG00957702: hypothetical protein, at 5,670,284 to 5,670,589
_5083
PfGW456L13_5241 - tRNA-Thr-CGT, at 5,670,924 to 5,670,996
_5241
PfGW456L13_5084 - Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8), at 5,671,136 to 5,673,241
_5084
Position (kb)
5669
5670
5671 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5668.534 kb on + strand at 5669.060 kb on + strand at 5669.084 kb on + strand at 5669.084 kb on + strand at 5669.084 kb on + strand at 5669.084 kb on + strand at 5669.084 kb on + strand at 5669.084 kb on + strand at 5669.085 kb on - strand at 5669.085 kb on - strand at 5669.085 kb on - strand at 5669.095 kb on + strand at 5669.095 kb on + strand at 5669.095 kb on + strand at 5669.096 kb on - strand at 5669.096 kb on - strand at 5669.096 kb on - strand at 5669.096 kb on - strand at 5669.096 kb on - strand at 5669.106 kb on - strand at 5669.162 kb on + strand at 5669.162 kb on + strand at 5669.162 kb on + strand at 5669.162 kb on + strand at 5669.162 kb on + strand at 5669.162 kb on + strand at 5669.162 kb on + strand at 5669.162 kb on + strand at 5669.162 kb on + strand at 5669.163 kb on - strand at 5669.163 kb on - strand at 5669.163 kb on - strand at 5669.163 kb on - strand at 5669.163 kb on - strand at 5669.163 kb on - strand at 5669.212 kb on + strand at 5669.212 kb on + strand at 5669.213 kb on - strand at 5669.213 kb on - strand at 5669.213 kb on - strand at 5669.232 kb on + strand at 5669.271 kb on + strand at 5669.272 kb on - strand at 5669.272 kb on - strand at 5669.272 kb on - strand at 5669.273 kb on + strand at 5669.273 kb on + strand at 5669.274 kb on - strand at 5669.274 kb on - strand at 5669.314 kb on + strand at 5669.314 kb on + strand at 5669.314 kb on + strand at 5669.314 kb on + strand at 5669.315 kb on - strand at 5669.315 kb on - strand at 5669.664 kb on + strand, within PfGW456L13_5082 at 5669.665 kb on - strand, within PfGW456L13_5082 at 5669.748 kb on + strand, within PfGW456L13_5082 at 5669.749 kb on - strand, within PfGW456L13_5082 at 5669.775 kb on - strand, within PfGW456L13_5082 at 5669.793 kb on + strand, within PfGW456L13_5082 at 5669.794 kb on - strand, within PfGW456L13_5082 at 5669.794 kb on - strand, within PfGW456L13_5082 at 5670.050 kb on + strand, within PfGW456L13_5082 at 5670.050 kb on + strand, within PfGW456L13_5082 at 5670.050 kb on + strand, within PfGW456L13_5082 at 5670.050 kb on + strand, within PfGW456L13_5082 at 5670.050 kb on + strand, within PfGW456L13_5082 at 5670.050 kb on + strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.084 kb on + strand at 5670.084 kb on + strand at 5670.084 kb on + strand at 5670.085 kb on - strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.180 kb on + strand at 5670.180 kb on + strand at 5670.180 kb on + strand at 5670.203 kb on + strand at 5670.203 kb on + strand at 5670.204 kb on - strand at 5670.230 kb on - strand at 5670.230 kb on - strand at 5670.230 kb on - strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.275 kb on - strand at 5670.275 kb on - strand at 5670.275 kb on - strand at 5670.275 kb on - strand at 5670.312 kb on + strand at 5670.399 kb on + strand, within PfGW456L13_5083 at 5670.399 kb on + strand, within PfGW456L13_5083 at 5670.399 kb on + strand, within PfGW456L13_5083 at 5670.399 kb on + strand, within PfGW456L13_5083 at 5670.399 kb on + strand, within PfGW456L13_5083 at 5670.399 kb on + strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.674 kb on + strand at 5670.674 kb on + strand at 5670.674 kb on + strand at 5670.674 kb on + strand at 5670.675 kb on - strand at 5670.676 kb on + strand at 5670.676 kb on + strand at 5670.676 kb on + strand at 5670.676 kb on + strand at 5670.677 kb on - strand at 5670.677 kb on - strand at 5670.677 kb on - strand at 5670.677 kb on - strand at 5670.677 kb on - strand at 5670.742 kb on - strand at 5670.742 kb on - strand at 5670.743 kb on + strand at 5670.743 kb on + strand at 5670.743 kb on + strand at 5670.743 kb on + strand at 5670.764 kb on + strand at 5670.765 kb on - strand at 5670.765 kb on - strand at 5670.765 kb on - strand at 5670.776 kb on + strand at 5670.776 kb on + strand at 5670.776 kb on + strand at 5670.776 kb on + strand at 5670.777 kb on - strand at 5670.829 kb on + strand at 5670.829 kb on + strand at 5670.829 kb on + strand at 5670.829 kb on + strand at 5670.829 kb on + strand at 5670.830 kb on - strand at 5670.830 kb on - strand at 5670.976 kb on + strand, within PfGW456L13_5241 at 5670.988 kb on + strand, within PfGW456L13_5241 at 5670.989 kb on - strand at 5671.010 kb on + strand at 5671.010 kb on + strand at 5671.011 kb on - strand at 5671.011 kb on - strand at 5671.058 kb on + strand at 5671.058 kb on + strand at 5671.059 kb on - strand at 5671.059 kb on - strand at 5671.059 kb on - strand at 5671.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 5,668,534 + +0.2 5,669,060 + +0.2 5,669,084 + +0.8 5,669,084 + +0.2 5,669,084 + -0.4 5,669,084 + -0.1 5,669,084 + -1.9 5,669,084 + +0.1 5,669,085 - +0.9 5,669,085 - +1.1 5,669,085 - +1.2 5,669,095 + -0.5 5,669,095 + +1.0 5,669,095 + +0.2 5,669,096 - -0.1 5,669,096 - +0.7 5,669,096 - -0.6 5,669,096 - +1.0 5,669,096 - -0.1 5,669,106 - +0.2 5,669,162 + +0.1 5,669,162 + +0.0 5,669,162 + +0.4 5,669,162 + +0.6 5,669,162 + +0.2 5,669,162 + -1.1 5,669,162 + +0.7 5,669,162 + -0.2 5,669,162 + +0.4 5,669,163 - -0.4 5,669,163 - +0.9 5,669,163 - +0.9 5,669,163 - +1.2 5,669,163 - -0.7 5,669,163 - +0.5 5,669,212 + +0.4 5,669,212 + +0.2 5,669,213 - +0.9 5,669,213 - +0.1 5,669,213 - +0.4 5,669,232 + +0.9 5,669,271 + +0.1 5,669,272 - +0.7 5,669,272 - -1.6 5,669,272 - +0.2 5,669,273 + -0.4 5,669,273 + -0.3 5,669,274 - -2.5 5,669,274 - -0.9 5,669,314 + +0.2 5,669,314 + -2.2 5,669,314 + -3.0 5,669,314 + +1.2 5,669,315 - -1.3 5,669,315 - -1.0 5,669,664 + PfGW456L13_5082 0.42 -0.6 5,669,665 - PfGW456L13_5082 0.43 -2.3 5,669,748 + PfGW456L13_5082 0.52 -1.9 5,669,749 - PfGW456L13_5082 0.52 -1.8 5,669,775 - PfGW456L13_5082 0.55 -1.0 5,669,793 + PfGW456L13_5082 0.58 -2.5 5,669,794 - PfGW456L13_5082 0.58 +0.2 5,669,794 - PfGW456L13_5082 0.58 -2.3 5,670,050 + PfGW456L13_5082 0.88 -1.8 5,670,050 + PfGW456L13_5082 0.88 -1.5 5,670,050 + PfGW456L13_5082 0.88 -1.1 5,670,050 + PfGW456L13_5082 0.88 -0.3 5,670,050 + PfGW456L13_5082 0.88 -2.8 5,670,050 + PfGW456L13_5082 0.88 -0.8 5,670,051 - PfGW456L13_5082 0.88 +0.5 5,670,051 - PfGW456L13_5082 0.88 -2.0 5,670,051 - PfGW456L13_5082 0.88 -1.7 5,670,051 - PfGW456L13_5082 0.88 +0.8 5,670,051 - PfGW456L13_5082 0.88 -2.5 5,670,051 - PfGW456L13_5082 0.88 +0.5 5,670,051 - PfGW456L13_5082 0.88 -1.8 5,670,084 + -2.1 5,670,084 + -0.2 5,670,084 + -0.5 5,670,085 - -1.6 5,670,160 + -0.6 5,670,160 + +0.7 5,670,160 + +0.1 5,670,160 + -1.1 5,670,160 + -1.3 5,670,160 + -0.8 5,670,160 + -0.3 5,670,160 + -0.7 5,670,160 + -0.3 5,670,160 + +0.5 5,670,160 + -0.2 5,670,160 + -1.7 5,670,160 + +0.6 5,670,160 + -1.8 5,670,161 - -0.2 5,670,161 - +0.0 5,670,161 - +0.7 5,670,161 - +1.1 5,670,161 - +0.4 5,670,161 - -1.6 5,670,161 - +0.2 5,670,161 - -0.5 5,670,161 - -0.1 5,670,161 - -0.5 5,670,180 + -1.1 5,670,180 + -0.9 5,670,180 + +0.3 5,670,203 + -1.0 5,670,203 + +1.1 5,670,204 - -1.1 5,670,230 - -0.3 5,670,230 - +1.1 5,670,230 - -0.3 5,670,274 + -0.6 5,670,274 + -0.6 5,670,274 + +0.3 5,670,274 + -0.5 5,670,274 + -0.3 5,670,274 + +0.2 5,670,274 + -0.2 5,670,274 + -0.1 5,670,275 - -0.4 5,670,275 - -0.0 5,670,275 - -0.7 5,670,275 - -0.4 5,670,312 + -1.0 5,670,399 + PfGW456L13_5083 0.38 +0.5 5,670,399 + PfGW456L13_5083 0.38 +0.6 5,670,399 + PfGW456L13_5083 0.38 -0.6 5,670,399 + PfGW456L13_5083 0.38 +0.6 5,670,399 + PfGW456L13_5083 0.38 -2.3 5,670,399 + PfGW456L13_5083 0.38 +0.0 5,670,400 - PfGW456L13_5083 0.38 +0.1 5,670,400 - PfGW456L13_5083 0.38 -1.6 5,670,400 - PfGW456L13_5083 0.38 -0.0 5,670,400 - PfGW456L13_5083 0.38 -0.8 5,670,400 - PfGW456L13_5083 0.38 -0.4 5,670,400 - PfGW456L13_5083 0.38 -0.1 5,670,400 - PfGW456L13_5083 0.38 +0.2 5,670,534 + PfGW456L13_5083 0.82 +1.7 5,670,534 + PfGW456L13_5083 0.82 +0.5 5,670,534 + PfGW456L13_5083 0.82 +0.2 5,670,534 + PfGW456L13_5083 0.82 -1.0 5,670,534 + PfGW456L13_5083 0.82 -0.2 5,670,534 + PfGW456L13_5083 0.82 +0.6 5,670,534 + PfGW456L13_5083 0.82 -1.1 5,670,534 + PfGW456L13_5083 0.82 +0.2 5,670,534 + PfGW456L13_5083 0.82 -0.0 5,670,534 + PfGW456L13_5083 0.82 +0.8 5,670,534 + PfGW456L13_5083 0.82 -0.1 5,670,534 - PfGW456L13_5083 0.82 -0.1 5,670,535 - PfGW456L13_5083 0.82 +0.6 5,670,535 - PfGW456L13_5083 0.82 -0.0 5,670,535 - PfGW456L13_5083 0.82 +0.2 5,670,535 - PfGW456L13_5083 0.82 +1.1 5,670,535 - PfGW456L13_5083 0.82 -0.4 5,670,535 - PfGW456L13_5083 0.82 +0.8 5,670,535 - PfGW456L13_5083 0.82 +0.1 5,670,535 - PfGW456L13_5083 0.82 -0.4 5,670,674 + +0.7 5,670,674 + -0.1 5,670,674 + +0.1 5,670,674 + -0.0 5,670,675 - +0.2 5,670,676 + +0.2 5,670,676 + -0.2 5,670,676 + +0.5 5,670,676 + -0.1 5,670,677 - -1.2 5,670,677 - -0.2 5,670,677 - -1.8 5,670,677 - +0.6 5,670,677 - +0.1 5,670,742 - -0.9 5,670,742 - +0.1 5,670,743 + -0.5 5,670,743 + +1.4 5,670,743 + +0.4 5,670,743 + +0.4 5,670,764 + +0.2 5,670,765 - +1.7 5,670,765 - +0.1 5,670,765 - +0.0 5,670,776 + -2.8 5,670,776 + -0.9 5,670,776 + +0.1 5,670,776 + -0.4 5,670,777 - -0.1 5,670,829 + -1.3 5,670,829 + -0.7 5,670,829 + -0.3 5,670,829 + -0.3 5,670,829 + -0.4 5,670,830 - -0.6 5,670,830 - +0.4 5,670,976 + PfGW456L13_5241 0.71 -0.2 5,670,988 + PfGW456L13_5241 0.88 +1.5 5,670,989 - +0.4 5,671,010 + -0.7 5,671,010 + -0.0 5,671,011 - +0.1 5,671,011 - +0.1 5,671,058 + +0.5 5,671,058 + -1.8 5,671,059 - +0.7 5,671,059 - -0.2 5,671,059 - -0.9 5,671,106 - -1.6
Or see this region's nucleotide sequence