Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4859

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4857 and PfGW456L13_4858 overlap by 13 nucleotidesPfGW456L13_4858 and PfGW456L13_4859 are separated by 76 nucleotidesPfGW456L13_4859 and PfGW456L13_4860 overlap by 8 nucleotidesPfGW456L13_4860 and PfGW456L13_4861 are separated by 41 nucleotides PfGW456L13_4857 - GTP-binding protein EngA, at 5,424,144 to 5,425,613 _4857 PfGW456L13_4858 - hypothetical protein, at 5,425,601 to 5,425,777 _4858 PfGW456L13_4859 - Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB), at 5,425,854 to 5,427,005 _4859 PfGW456L13_4860 - Mlr7403 protein, at 5,426,998 to 5,427,639 _4860 PfGW456L13_4861 - Histidyl-tRNA synthetase (EC 6.1.1.21), at 5,427,681 to 5,428,970 _4861 Position (kb) 5425 5426 5427 5428Strain fitness (log2 ratio) -3 -2 -1 0 1at 5425.644 kb on - strand, within PfGW456L13_4858at 5425.762 kb on - strandat 5425.762 kb on - strandat 5425.762 kb on - strandat 5425.762 kb on - strandat 5425.762 kb on - strandat 5425.762 kb on - strandat 5425.797 kb on - strandat 5425.797 kb on - strandat 5425.797 kb on - strandat 5425.797 kb on - strandat 5425.805 kb on - strandat 5425.805 kb on - strandat 5425.805 kb on - strandat 5425.844 kb on - strandat 5425.844 kb on - strandat 5425.844 kb on - strandat 5425.844 kb on - strandat 5425.844 kb on - strandat 5425.844 kb on - strandat 5425.856 kb on - strandat 5425.856 kb on - strandat 5425.856 kb on - strandat 5425.856 kb on - strandat 5425.860 kb on - strandat 5425.895 kb on - strandat 5425.897 kb on - strandat 5425.901 kb on - strandat 5425.901 kb on - strandat 5425.901 kb on - strandat 5426.147 kb on - strand, within PfGW456L13_4859at 5426.249 kb on - strand, within PfGW456L13_4859at 5426.261 kb on - strand, within PfGW456L13_4859at 5426.261 kb on - strand, within PfGW456L13_4859at 5426.261 kb on - strand, within PfGW456L13_4859at 5426.261 kb on - strand, within PfGW456L13_4859at 5426.483 kb on - strand, within PfGW456L13_4859at 5426.483 kb on - strand, within PfGW456L13_4859at 5426.789 kb on - strand, within PfGW456L13_4859at 5426.789 kb on - strand, within PfGW456L13_4859at 5426.789 kb on - strand, within PfGW456L13_4859at 5426.828 kb on - strand, within PfGW456L13_4859at 5427.363 kb on - strand, within PfGW456L13_4860at 5427.513 kb on - strand, within PfGW456L13_4860at 5427.646 kb on - strandat 5427.660 kb on - strandat 5427.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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5,425,644 - PfGW456L13_4858 0.24 -0.4
5,425,762 - +0.7
5,425,762 - -0.8
5,425,762 - +1.2
5,425,762 - -1.3
5,425,762 - +1.4
5,425,762 - +0.4
5,425,797 - -0.5
5,425,797 - -0.2
5,425,797 - -0.2
5,425,797 - +0.0
5,425,805 - -0.1
5,425,805 - -0.4
5,425,805 - +0.1
5,425,844 - +0.2
5,425,844 - -1.0
5,425,844 - -0.1
5,425,844 - +0.5
5,425,844 - -0.9
5,425,844 - +0.9
5,425,856 - -2.9
5,425,856 - +0.6
5,425,856 - +0.6
5,425,856 - +0.4
5,425,860 - -1.0
5,425,895 - -1.6
5,425,897 - -2.6
5,425,901 - -1.8
5,425,901 - -3.3
5,425,901 - -1.5
5,426,147 - PfGW456L13_4859 0.25 -1.8
5,426,249 - PfGW456L13_4859 0.34 -3.3
5,426,261 - PfGW456L13_4859 0.35 -2.6
5,426,261 - PfGW456L13_4859 0.35 -1.6
5,426,261 - PfGW456L13_4859 0.35 -2.3
5,426,261 - PfGW456L13_4859 0.35 -0.5
5,426,483 - PfGW456L13_4859 0.55 -2.7
5,426,483 - PfGW456L13_4859 0.55 -3.2
5,426,789 - PfGW456L13_4859 0.81 -2.3
5,426,789 - PfGW456L13_4859 0.81 -2.0
5,426,789 - PfGW456L13_4859 0.81 -1.4
5,426,828 - PfGW456L13_4859 0.85 -1.8
5,427,363 - PfGW456L13_4860 0.57 +0.7
5,427,513 - PfGW456L13_4860 0.80 +0.8
5,427,646 - +0.2
5,427,660 - +0.7
5,427,673 - +0.2

Or see this region's nucleotide sequence