Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4590 and PfGW456L13_4591 overlap by 1 nucleotides PfGW456L13_4591 and PfGW456L13_4592 overlap by 1 nucleotides PfGW456L13_4592 and PfGW456L13_4593 are separated by 269 nucleotides
PfGW456L13_4590 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 5,122,544 to 5,123,746
_4590
PfGW456L13_4591 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) , at 5,123,746 to 5,124,525
_4591
PfGW456L13_4592 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) , at 5,124,525 to 5,125,382
_4592
PfGW456L13_4593 - 4-hydroxybenzoate transporter, at 5,125,652 to 5,126,998
_4593
Position (kb)
5124
5125
5126 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5123.539 kb on + strand, within PfGW456L13_4590 at 5123.540 kb on - strand, within PfGW456L13_4590 at 5123.731 kb on + strand at 5123.731 kb on + strand at 5123.731 kb on + strand at 5123.732 kb on - strand at 5123.732 kb on - strand at 5123.732 kb on - strand at 5123.733 kb on + strand at 5123.733 kb on + strand at 5123.733 kb on + strand at 5123.733 kb on + strand at 5123.733 kb on + strand at 5123.733 kb on + strand at 5123.734 kb on - strand at 5123.734 kb on - strand at 5123.734 kb on - strand at 5123.734 kb on - strand at 5123.734 kb on - strand at 5123.734 kb on - strand at 5123.734 kb on - strand at 5123.734 kb on - strand at 5124.051 kb on + strand, within PfGW456L13_4591 at 5124.176 kb on + strand, within PfGW456L13_4591 at 5124.176 kb on + strand, within PfGW456L13_4591 at 5124.177 kb on - strand, within PfGW456L13_4591 at 5124.177 kb on - strand, within PfGW456L13_4591 at 5124.177 kb on - strand, within PfGW456L13_4591 at 5124.296 kb on - strand, within PfGW456L13_4591 at 5124.346 kb on + strand, within PfGW456L13_4591 at 5124.347 kb on - strand, within PfGW456L13_4591 at 5124.347 kb on - strand, within PfGW456L13_4591 at 5124.347 kb on - strand, within PfGW456L13_4591 at 5124.347 kb on - strand, within PfGW456L13_4591 at 5124.380 kb on + strand, within PfGW456L13_4591 at 5124.518 kb on + strand at 5124.518 kb on + strand at 5124.518 kb on + strand at 5124.518 kb on + strand at 5124.518 kb on + strand at 5124.519 kb on - strand at 5124.519 kb on - strand at 5124.519 kb on - strand at 5124.519 kb on - strand at 5124.519 kb on - strand at 5124.519 kb on - strand at 5124.519 kb on - strand at 5124.526 kb on + strand at 5124.526 kb on + strand at 5124.526 kb on + strand at 5124.526 kb on + strand at 5124.527 kb on - strand at 5124.527 kb on - strand at 5124.592 kb on + strand at 5124.592 kb on + strand at 5124.592 kb on + strand at 5124.592 kb on + strand at 5124.592 kb on + strand at 5124.592 kb on + strand at 5124.592 kb on + strand at 5124.593 kb on - strand at 5124.593 kb on - strand at 5124.593 kb on - strand at 5124.593 kb on - strand at 5124.593 kb on - strand at 5124.652 kb on + strand, within PfGW456L13_4592 at 5124.653 kb on - strand, within PfGW456L13_4592 at 5124.676 kb on + strand, within PfGW456L13_4592 at 5124.676 kb on + strand, within PfGW456L13_4592 at 5124.676 kb on + strand, within PfGW456L13_4592 at 5124.676 kb on + strand, within PfGW456L13_4592 at 5124.677 kb on - strand, within PfGW456L13_4592 at 5124.711 kb on + strand, within PfGW456L13_4592 at 5124.711 kb on + strand, within PfGW456L13_4592 at 5124.711 kb on + strand, within PfGW456L13_4592 at 5124.711 kb on + strand, within PfGW456L13_4592 at 5124.711 kb on + strand, within PfGW456L13_4592 at 5124.712 kb on - strand, within PfGW456L13_4592 at 5124.712 kb on - strand, within PfGW456L13_4592 at 5124.748 kb on - strand, within PfGW456L13_4592 at 5124.748 kb on - strand, within PfGW456L13_4592 at 5125.051 kb on + strand, within PfGW456L13_4592 at 5125.051 kb on + strand, within PfGW456L13_4592 at 5125.052 kb on - strand, within PfGW456L13_4592 at 5125.117 kb on - strand, within PfGW456L13_4592 at 5125.213 kb on + strand, within PfGW456L13_4592 at 5125.214 kb on - strand, within PfGW456L13_4592 at 5125.214 kb on - strand, within PfGW456L13_4592 at 5125.214 kb on - strand, within PfGW456L13_4592 at 5125.214 kb on - strand, within PfGW456L13_4592 at 5125.304 kb on + strand at 5125.326 kb on - strand at 5125.338 kb on + strand at 5125.400 kb on + strand at 5125.401 kb on - strand at 5125.458 kb on + strand at 5125.458 kb on + strand at 5125.531 kb on + strand at 5125.535 kb on + strand at 5125.536 kb on - strand at 5125.623 kb on + strand at 5125.623 kb on + strand at 5125.623 kb on + strand at 5125.623 kb on + strand at 5125.623 kb on + strand at 5125.623 kb on + strand at 5125.623 kb on + strand at 5125.624 kb on - strand at 5125.624 kb on - strand at 5125.624 kb on - strand at 5125.624 kb on - strand at 5125.624 kb on - strand at 5125.995 kb on + strand, within PfGW456L13_4593 at 5125.995 kb on + strand, within PfGW456L13_4593 at 5125.995 kb on + strand, within PfGW456L13_4593 at 5125.995 kb on + strand, within PfGW456L13_4593 at 5125.996 kb on - strand, within PfGW456L13_4593 at 5125.996 kb on - strand, within PfGW456L13_4593 at 5126.081 kb on + strand, within PfGW456L13_4593 at 5126.081 kb on + strand, within PfGW456L13_4593 at 5126.081 kb on + strand, within PfGW456L13_4593 at 5126.081 kb on + strand, within PfGW456L13_4593 at 5126.160 kb on + strand, within PfGW456L13_4593 at 5126.161 kb on - strand, within PfGW456L13_4593 at 5126.161 kb on - strand, within PfGW456L13_4593 at 5126.161 kb on - strand, within PfGW456L13_4593 at 5126.184 kb on + strand, within PfGW456L13_4593 at 5126.184 kb on + strand, within PfGW456L13_4593 at 5126.184 kb on + strand, within PfGW456L13_4593 at 5126.184 kb on + strand, within PfGW456L13_4593 at 5126.184 kb on + strand, within PfGW456L13_4593 at 5126.184 kb on + strand at 5126.185 kb on - strand, within PfGW456L13_4593 at 5126.185 kb on - strand, within PfGW456L13_4593 at 5126.185 kb on - strand, within PfGW456L13_4593 at 5126.185 kb on - strand, within PfGW456L13_4593 at 5126.217 kb on + strand, within PfGW456L13_4593 at 5126.217 kb on + strand, within PfGW456L13_4593 at 5126.217 kb on + strand, within PfGW456L13_4593 at 5126.217 kb on + strand, within PfGW456L13_4593 at 5126.217 kb on + strand, within PfGW456L13_4593 at 5126.217 kb on + strand, within PfGW456L13_4593 at 5126.218 kb on - strand, within PfGW456L13_4593 at 5126.218 kb on - strand, within PfGW456L13_4593 at 5126.218 kb on - strand, within PfGW456L13_4593 at 5126.218 kb on - strand, within PfGW456L13_4593 at 5126.218 kb on - strand, within PfGW456L13_4593 at 5126.218 kb on - strand, within PfGW456L13_4593 at 5126.336 kb on + strand, within PfGW456L13_4593 at 5126.336 kb on + strand, within PfGW456L13_4593 at 5126.336 kb on + strand, within PfGW456L13_4593 at 5126.336 kb on + strand, within PfGW456L13_4593 at 5126.336 kb on + strand, within PfGW456L13_4593 at 5126.337 kb on - strand, within PfGW456L13_4593 at 5126.337 kb on - strand, within PfGW456L13_4593 at 5126.337 kb on - strand, within PfGW456L13_4593 at 5126.337 kb on - strand, within PfGW456L13_4593 at 5126.337 kb on - strand, within PfGW456L13_4593 at 5126.337 kb on - strand, within PfGW456L13_4593 at 5126.337 kb on - strand, within PfGW456L13_4593 at 5126.337 kb on - strand, within PfGW456L13_4593
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 5,123,539 + PfGW456L13_4590 0.83 -2.2 5,123,540 - PfGW456L13_4590 0.83 -0.0 5,123,731 + +0.1 5,123,731 + +0.6 5,123,731 + +2.2 5,123,732 - +0.3 5,123,732 - -0.5 5,123,732 - +0.1 5,123,733 + -0.3 5,123,733 + -0.5 5,123,733 + +0.7 5,123,733 + -0.2 5,123,733 + -1.1 5,123,733 + +0.8 5,123,734 - +0.1 5,123,734 - -0.1 5,123,734 - -0.1 5,123,734 - +0.7 5,123,734 - +1.3 5,123,734 - +1.3 5,123,734 - +0.4 5,123,734 - +0.1 5,124,051 + PfGW456L13_4591 0.39 +1.3 5,124,176 + PfGW456L13_4591 0.55 +1.1 5,124,176 + PfGW456L13_4591 0.55 +1.1 5,124,177 - PfGW456L13_4591 0.55 +1.4 5,124,177 - PfGW456L13_4591 0.55 +1.7 5,124,177 - PfGW456L13_4591 0.55 +0.7 5,124,296 - PfGW456L13_4591 0.71 +1.5 5,124,346 + PfGW456L13_4591 0.77 +1.3 5,124,347 - PfGW456L13_4591 0.77 +1.2 5,124,347 - PfGW456L13_4591 0.77 +0.8 5,124,347 - PfGW456L13_4591 0.77 +1.6 5,124,347 - PfGW456L13_4591 0.77 +1.2 5,124,380 + PfGW456L13_4591 0.81 +1.0 5,124,518 + +0.7 5,124,518 + +0.6 5,124,518 + -2.6 5,124,518 + -1.0 5,124,518 + -1.1 5,124,519 - +0.4 5,124,519 - +1.9 5,124,519 - +0.7 5,124,519 - +0.9 5,124,519 - +2.1 5,124,519 - +1.2 5,124,519 - +0.7 5,124,526 + +0.6 5,124,526 + -0.8 5,124,526 + +1.4 5,124,526 + +0.1 5,124,527 - +2.8 5,124,527 - +0.0 5,124,592 + +0.1 5,124,592 + +1.5 5,124,592 + +0.8 5,124,592 + +1.1 5,124,592 + +1.6 5,124,592 + +0.9 5,124,592 + +1.5 5,124,593 - +1.2 5,124,593 - +0.2 5,124,593 - +1.6 5,124,593 - +0.9 5,124,593 - +2.0 5,124,652 + PfGW456L13_4592 0.15 +1.4 5,124,653 - PfGW456L13_4592 0.15 +1.2 5,124,676 + PfGW456L13_4592 0.18 +1.8 5,124,676 + PfGW456L13_4592 0.18 -0.1 5,124,676 + PfGW456L13_4592 0.18 +1.2 5,124,676 + PfGW456L13_4592 0.18 -0.3 5,124,677 - PfGW456L13_4592 0.18 +1.2 5,124,711 + PfGW456L13_4592 0.22 +0.8 5,124,711 + PfGW456L13_4592 0.22 +0.3 5,124,711 + PfGW456L13_4592 0.22 +1.3 5,124,711 + PfGW456L13_4592 0.22 +1.1 5,124,711 + PfGW456L13_4592 0.22 +2.0 5,124,712 - PfGW456L13_4592 0.22 +0.9 5,124,712 - PfGW456L13_4592 0.22 +1.2 5,124,748 - PfGW456L13_4592 0.26 +1.0 5,124,748 - PfGW456L13_4592 0.26 +2.1 5,125,051 + PfGW456L13_4592 0.61 +0.8 5,125,051 + PfGW456L13_4592 0.61 -0.6 5,125,052 - PfGW456L13_4592 0.61 +2.0 5,125,117 - PfGW456L13_4592 0.69 +1.8 5,125,213 + PfGW456L13_4592 0.80 +1.2 5,125,214 - PfGW456L13_4592 0.80 +2.4 5,125,214 - PfGW456L13_4592 0.80 +0.6 5,125,214 - PfGW456L13_4592 0.80 -0.2 5,125,214 - PfGW456L13_4592 0.80 +1.8 5,125,304 + +1.3 5,125,326 - +2.1 5,125,338 + +1.3 5,125,400 + +1.9 5,125,401 - +0.3 5,125,458 + -0.4 5,125,458 + +0.2 5,125,531 + -0.9 5,125,535 + -0.2 5,125,536 - +0.3 5,125,623 + -0.1 5,125,623 + +0.3 5,125,623 + +0.5 5,125,623 + +0.3 5,125,623 + -0.2 5,125,623 + -0.6 5,125,623 + -1.7 5,125,624 - +0.3 5,125,624 - -0.6 5,125,624 - -0.3 5,125,624 - +0.1 5,125,624 - -0.1 5,125,995 + PfGW456L13_4593 0.25 +0.3 5,125,995 + PfGW456L13_4593 0.25 -0.9 5,125,995 + PfGW456L13_4593 0.25 -0.8 5,125,995 + PfGW456L13_4593 0.25 -1.0 5,125,996 - PfGW456L13_4593 0.26 +0.1 5,125,996 - PfGW456L13_4593 0.26 -1.1 5,126,081 + PfGW456L13_4593 0.32 +0.6 5,126,081 + PfGW456L13_4593 0.32 -1.1 5,126,081 + PfGW456L13_4593 0.32 -2.6 5,126,081 + PfGW456L13_4593 0.32 +0.1 5,126,160 + PfGW456L13_4593 0.38 -1.2 5,126,161 - PfGW456L13_4593 0.38 -0.9 5,126,161 - PfGW456L13_4593 0.38 -0.3 5,126,161 - PfGW456L13_4593 0.38 -0.4 5,126,184 + PfGW456L13_4593 0.39 -0.2 5,126,184 + PfGW456L13_4593 0.39 -0.6 5,126,184 + PfGW456L13_4593 0.39 +0.4 5,126,184 + PfGW456L13_4593 0.39 -1.2 5,126,184 + PfGW456L13_4593 0.39 -0.9 5,126,184 + +0.5 5,126,185 - PfGW456L13_4593 0.40 -0.5 5,126,185 - PfGW456L13_4593 0.40 +0.6 5,126,185 - PfGW456L13_4593 0.40 -1.0 5,126,185 - PfGW456L13_4593 0.40 -0.6 5,126,217 + PfGW456L13_4593 0.42 -0.5 5,126,217 + PfGW456L13_4593 0.42 -0.3 5,126,217 + PfGW456L13_4593 0.42 -0.1 5,126,217 + PfGW456L13_4593 0.42 +0.2 5,126,217 + PfGW456L13_4593 0.42 -0.1 5,126,217 + PfGW456L13_4593 0.42 +0.2 5,126,218 - PfGW456L13_4593 0.42 +1.0 5,126,218 - PfGW456L13_4593 0.42 -0.9 5,126,218 - PfGW456L13_4593 0.42 -0.1 5,126,218 - PfGW456L13_4593 0.42 +0.1 5,126,218 - PfGW456L13_4593 0.42 +0.3 5,126,218 - PfGW456L13_4593 0.42 -0.6 5,126,336 + PfGW456L13_4593 0.51 -0.9 5,126,336 + PfGW456L13_4593 0.51 -0.6 5,126,336 + PfGW456L13_4593 0.51 +0.8 5,126,336 + PfGW456L13_4593 0.51 +0.3 5,126,336 + PfGW456L13_4593 0.51 -0.3 5,126,337 - PfGW456L13_4593 0.51 -0.1 5,126,337 - PfGW456L13_4593 0.51 +0.0 5,126,337 - PfGW456L13_4593 0.51 -0.9 5,126,337 - PfGW456L13_4593 0.51 -0.5 5,126,337 - PfGW456L13_4593 0.51 -0.1 5,126,337 - PfGW456L13_4593 0.51 +0.5 5,126,337 - PfGW456L13_4593 0.51 -0.4 5,126,337 - PfGW456L13_4593 0.51 -1.3
Or see this region's nucleotide sequence