Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4173 and PfGW456L13_4174 are separated by 104 nucleotides PfGW456L13_4174 and PfGW456L13_4175 are separated by 166 nucleotides PfGW456L13_4175 and PfGW456L13_4176 are separated by 82 nucleotides PfGW456L13_4176 and PfGW456L13_4177 are separated by 289 nucleotides
PfGW456L13_4173 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 4,685,921 to 4,686,466
_4173
PfGW456L13_4174 - Glutaredoxin, at 4,686,571 to 4,686,942
_4174
PfGW456L13_4175 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 4,687,109 to 4,688,275
_4175
PfGW456L13_4176 - Transcriptional regulator, MarR family, at 4,688,358 to 4,688,801
_4176
PfGW456L13_4177 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 4,689,091 to 4,690,440
_4177
Position (kb)
4687
4688
4689 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4686.464 kb on + strand at 4686.464 kb on + strand at 4686.465 kb on - strand at 4686.465 kb on - strand at 4686.528 kb on + strand at 4686.529 kb on - strand at 4686.529 kb on - strand at 4686.544 kb on - strand at 4686.578 kb on + strand at 4686.706 kb on + strand, within PfGW456L13_4174 at 4686.707 kb on - strand, within PfGW456L13_4174 at 4686.889 kb on + strand, within PfGW456L13_4174 at 4686.889 kb on + strand, within PfGW456L13_4174 at 4686.889 kb on + strand, within PfGW456L13_4174 at 4686.889 kb on + strand, within PfGW456L13_4174 at 4686.889 kb on + strand, within PfGW456L13_4174 at 4686.890 kb on - strand, within PfGW456L13_4174 at 4686.890 kb on - strand, within PfGW456L13_4174 at 4686.913 kb on + strand at 4686.913 kb on + strand at 4686.913 kb on + strand at 4686.913 kb on + strand at 4686.914 kb on - strand at 4687.007 kb on + strand at 4687.007 kb on + strand at 4687.007 kb on + strand at 4687.007 kb on + strand at 4687.008 kb on - strand at 4687.008 kb on - strand at 4687.008 kb on - strand at 4687.008 kb on - strand at 4687.062 kb on - strand at 4687.062 kb on - strand at 4687.078 kb on + strand at 4687.100 kb on + strand at 4687.101 kb on - strand at 4687.101 kb on - strand at 4687.106 kb on + strand at 4687.106 kb on + strand at 4687.106 kb on + strand at 4687.106 kb on + strand at 4687.106 kb on + strand at 4687.106 kb on + strand at 4687.107 kb on - strand at 4687.107 kb on - strand at 4687.107 kb on - strand at 4687.107 kb on - strand at 4687.110 kb on + strand at 4687.110 kb on + strand at 4687.110 kb on + strand at 4687.110 kb on + strand at 4687.111 kb on - strand at 4687.111 kb on - strand at 4687.111 kb on - strand at 4687.111 kb on - strand at 4687.441 kb on + strand, within PfGW456L13_4175 at 4687.455 kb on + strand, within PfGW456L13_4175 at 4687.455 kb on + strand, within PfGW456L13_4175 at 4687.572 kb on + strand, within PfGW456L13_4175 at 4687.572 kb on + strand, within PfGW456L13_4175 at 4687.620 kb on + strand, within PfGW456L13_4175 at 4687.620 kb on + strand, within PfGW456L13_4175 at 4687.620 kb on + strand, within PfGW456L13_4175 at 4687.620 kb on + strand, within PfGW456L13_4175 at 4687.620 kb on + strand, within PfGW456L13_4175 at 4687.620 kb on + strand, within PfGW456L13_4175 at 4687.620 kb on + strand, within PfGW456L13_4175 at 4687.621 kb on - strand, within PfGW456L13_4175 at 4687.621 kb on - strand, within PfGW456L13_4175 at 4687.767 kb on + strand, within PfGW456L13_4175 at 4687.806 kb on + strand, within PfGW456L13_4175 at 4687.806 kb on + strand, within PfGW456L13_4175 at 4687.806 kb on + strand, within PfGW456L13_4175 at 4687.806 kb on + strand, within PfGW456L13_4175 at 4687.806 kb on + strand, within PfGW456L13_4175 at 4687.807 kb on - strand, within PfGW456L13_4175 at 4687.807 kb on - strand, within PfGW456L13_4175 at 4687.807 kb on - strand, within PfGW456L13_4175 at 4687.807 kb on - strand, within PfGW456L13_4175 at 4687.807 kb on - strand, within PfGW456L13_4175 at 4687.807 kb on - strand, within PfGW456L13_4175 at 4687.807 kb on - strand, within PfGW456L13_4175 at 4687.845 kb on - strand, within PfGW456L13_4175 at 4687.932 kb on + strand, within PfGW456L13_4175 at 4687.932 kb on + strand, within PfGW456L13_4175 at 4687.932 kb on + strand, within PfGW456L13_4175 at 4687.933 kb on - strand, within PfGW456L13_4175 at 4687.973 kb on - strand, within PfGW456L13_4175 at 4687.974 kb on + strand, within PfGW456L13_4175 at 4687.974 kb on + strand, within PfGW456L13_4175 at 4687.974 kb on + strand, within PfGW456L13_4175 at 4687.974 kb on + strand, within PfGW456L13_4175 at 4687.974 kb on + strand, within PfGW456L13_4175 at 4687.974 kb on + strand, within PfGW456L13_4175 at 4687.974 kb on + strand, within PfGW456L13_4175 at 4687.974 kb on + strand, within PfGW456L13_4175 at 4687.974 kb on + strand, within PfGW456L13_4175 at 4687.975 kb on - strand, within PfGW456L13_4175 at 4687.975 kb on - strand, within PfGW456L13_4175 at 4687.975 kb on - strand, within PfGW456L13_4175 at 4687.975 kb on - strand, within PfGW456L13_4175 at 4687.975 kb on - strand, within PfGW456L13_4175 at 4687.975 kb on - strand, within PfGW456L13_4175 at 4687.975 kb on - strand, within PfGW456L13_4175 at 4687.975 kb on - strand, within PfGW456L13_4175 at 4688.025 kb on - strand, within PfGW456L13_4175 at 4688.245 kb on + strand at 4688.349 kb on + strand at 4688.636 kb on + strand, within PfGW456L13_4176 at 4688.843 kb on - strand at 4688.895 kb on + strand at 4688.895 kb on + strand at 4688.896 kb on - strand at 4688.896 kb on - strand at 4688.897 kb on + strand at 4688.897 kb on + strand at 4688.897 kb on + strand at 4688.897 kb on + strand at 4688.897 kb on + strand at 4688.897 kb on + strand at 4688.897 kb on + strand at 4688.898 kb on - strand at 4688.898 kb on - strand at 4688.898 kb on - strand at 4688.898 kb on - strand at 4688.898 kb on - strand at 4688.898 kb on - strand at 4688.940 kb on - strand at 4688.966 kb on + strand at 4688.967 kb on - strand at 4689.015 kb on + strand at 4689.015 kb on + strand at 4689.015 kb on + strand at 4689.016 kb on - strand at 4689.016 kb on - strand at 4689.016 kb on - strand at 4689.016 kb on - strand at 4689.067 kb on + strand at 4689.067 kb on + strand at 4689.084 kb on - strand at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.241 kb on + strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177 at 4689.242 kb on - strand, within PfGW456L13_4177
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 4,686,464 + +0.3 4,686,464 + +0.0 4,686,465 - -0.3 4,686,465 - -0.9 4,686,528 + -0.9 4,686,529 - -0.2 4,686,529 - +0.6 4,686,544 - -0.8 4,686,578 + -0.4 4,686,706 + PfGW456L13_4174 0.36 -0.2 4,686,707 - PfGW456L13_4174 0.37 +0.5 4,686,889 + PfGW456L13_4174 0.85 -0.2 4,686,889 + PfGW456L13_4174 0.85 +1.9 4,686,889 + PfGW456L13_4174 0.85 +0.1 4,686,889 + PfGW456L13_4174 0.85 +0.1 4,686,889 + PfGW456L13_4174 0.85 -0.6 4,686,890 - PfGW456L13_4174 0.86 +1.0 4,686,890 - PfGW456L13_4174 0.86 -0.1 4,686,913 + +0.4 4,686,913 + +0.1 4,686,913 + +0.2 4,686,913 + +0.2 4,686,914 - -0.1 4,687,007 + -0.0 4,687,007 + +0.1 4,687,007 + +0.7 4,687,007 + +0.3 4,687,008 - -0.9 4,687,008 - +2.0 4,687,008 - -0.6 4,687,008 - -0.7 4,687,062 - -0.4 4,687,062 - -0.3 4,687,078 + -0.4 4,687,100 + +0.4 4,687,101 - +0.5 4,687,101 - -0.5 4,687,106 + +0.1 4,687,106 + -0.3 4,687,106 + -0.7 4,687,106 + +0.0 4,687,106 + -0.7 4,687,106 + +0.5 4,687,107 - -0.1 4,687,107 - -0.3 4,687,107 - -0.3 4,687,107 - +0.0 4,687,110 + -0.1 4,687,110 + +0.3 4,687,110 + -0.1 4,687,110 + +0.6 4,687,111 - +0.3 4,687,111 - -0.3 4,687,111 - -1.2 4,687,111 - -0.6 4,687,441 + PfGW456L13_4175 0.28 +0.3 4,687,455 + PfGW456L13_4175 0.30 +0.8 4,687,455 + PfGW456L13_4175 0.30 -1.6 4,687,572 + PfGW456L13_4175 0.40 -0.6 4,687,572 + PfGW456L13_4175 0.40 -0.7 4,687,620 + PfGW456L13_4175 0.44 +0.9 4,687,620 + PfGW456L13_4175 0.44 -0.3 4,687,620 + PfGW456L13_4175 0.44 -0.5 4,687,620 + PfGW456L13_4175 0.44 +1.0 4,687,620 + PfGW456L13_4175 0.44 +0.5 4,687,620 + PfGW456L13_4175 0.44 +0.4 4,687,620 + PfGW456L13_4175 0.44 +0.8 4,687,621 - PfGW456L13_4175 0.44 +1.2 4,687,621 - PfGW456L13_4175 0.44 -0.4 4,687,767 + PfGW456L13_4175 0.56 +1.2 4,687,806 + PfGW456L13_4175 0.60 +0.0 4,687,806 + PfGW456L13_4175 0.60 +0.5 4,687,806 + PfGW456L13_4175 0.60 +0.5 4,687,806 + PfGW456L13_4175 0.60 -0.5 4,687,806 + PfGW456L13_4175 0.60 -0.5 4,687,807 - PfGW456L13_4175 0.60 +0.3 4,687,807 - PfGW456L13_4175 0.60 +0.6 4,687,807 - PfGW456L13_4175 0.60 -0.3 4,687,807 - PfGW456L13_4175 0.60 -0.2 4,687,807 - PfGW456L13_4175 0.60 -0.6 4,687,807 - PfGW456L13_4175 0.60 +0.9 4,687,807 - PfGW456L13_4175 0.60 -0.5 4,687,845 - PfGW456L13_4175 0.63 +0.4 4,687,932 + PfGW456L13_4175 0.71 +0.3 4,687,932 + PfGW456L13_4175 0.71 +0.6 4,687,932 + PfGW456L13_4175 0.71 -0.5 4,687,933 - PfGW456L13_4175 0.71 +0.2 4,687,973 - PfGW456L13_4175 0.74 +0.0 4,687,974 + PfGW456L13_4175 0.74 -0.8 4,687,974 + PfGW456L13_4175 0.74 +0.5 4,687,974 + PfGW456L13_4175 0.74 +0.5 4,687,974 + PfGW456L13_4175 0.74 +0.8 4,687,974 + PfGW456L13_4175 0.74 -0.3 4,687,974 + PfGW456L13_4175 0.74 -0.3 4,687,974 + PfGW456L13_4175 0.74 +0.2 4,687,974 + PfGW456L13_4175 0.74 +0.3 4,687,974 + PfGW456L13_4175 0.74 -2.1 4,687,975 - PfGW456L13_4175 0.74 -0.3 4,687,975 - PfGW456L13_4175 0.74 +0.5 4,687,975 - PfGW456L13_4175 0.74 +1.2 4,687,975 - PfGW456L13_4175 0.74 -0.2 4,687,975 - PfGW456L13_4175 0.74 +0.1 4,687,975 - PfGW456L13_4175 0.74 +0.6 4,687,975 - PfGW456L13_4175 0.74 -0.3 4,687,975 - PfGW456L13_4175 0.74 -0.0 4,688,025 - PfGW456L13_4175 0.78 +2.2 4,688,245 + +0.0 4,688,349 + +1.2 4,688,636 + PfGW456L13_4176 0.63 -0.8 4,688,843 - +0.5 4,688,895 + -0.8 4,688,895 + +0.1 4,688,896 - -0.1 4,688,896 - +0.1 4,688,897 + +0.0 4,688,897 + -0.8 4,688,897 + -0.1 4,688,897 + +1.0 4,688,897 + -0.2 4,688,897 + -1.3 4,688,897 + -0.4 4,688,898 - +0.3 4,688,898 - -0.1 4,688,898 - +0.6 4,688,898 - -0.4 4,688,898 - +0.0 4,688,898 - -0.4 4,688,940 - +0.6 4,688,966 + -0.6 4,688,967 - -1.3 4,689,015 + +0.1 4,689,015 + -0.4 4,689,015 + +0.8 4,689,016 - +0.6 4,689,016 - -0.7 4,689,016 - +0.2 4,689,016 - -0.4 4,689,067 + +0.7 4,689,067 + +1.2 4,689,084 - +1.1 4,689,241 + PfGW456L13_4177 0.11 +0.3 4,689,241 + PfGW456L13_4177 0.11 -0.6 4,689,241 + PfGW456L13_4177 0.11 +0.5 4,689,241 + PfGW456L13_4177 0.11 -0.4 4,689,241 + PfGW456L13_4177 0.11 -0.7 4,689,241 + PfGW456L13_4177 0.11 -0.2 4,689,241 + PfGW456L13_4177 0.11 -1.0 4,689,241 + PfGW456L13_4177 0.11 -0.3 4,689,241 + PfGW456L13_4177 0.11 +0.5 4,689,241 + PfGW456L13_4177 0.11 -0.4 4,689,241 + PfGW456L13_4177 0.11 +0.7 4,689,241 + PfGW456L13_4177 0.11 +0.3 4,689,241 + PfGW456L13_4177 0.11 -1.1 4,689,241 + PfGW456L13_4177 0.11 +1.1 4,689,241 + PfGW456L13_4177 0.11 -0.9 4,689,241 + PfGW456L13_4177 0.11 +0.2 4,689,242 - PfGW456L13_4177 0.11 +0.8 4,689,242 - PfGW456L13_4177 0.11 +0.8 4,689,242 - PfGW456L13_4177 0.11 -0.6 4,689,242 - PfGW456L13_4177 0.11 +0.4 4,689,242 - PfGW456L13_4177 0.11 -0.1 4,689,242 - PfGW456L13_4177 0.11 +0.9 4,689,242 - PfGW456L13_4177 0.11 -0.4 4,689,242 - PfGW456L13_4177 0.11 -0.7 4,689,242 - PfGW456L13_4177 0.11 -0.4 4,689,242 - PfGW456L13_4177 0.11 +0.5 4,689,242 - PfGW456L13_4177 0.11 +1.6 4,689,242 - PfGW456L13_4177 0.11 -0.7 4,689,242 - PfGW456L13_4177 0.11 -0.2 4,689,242 - PfGW456L13_4177 0.11 +0.2 4,689,242 - PfGW456L13_4177 0.11 +0.2 4,689,242 - PfGW456L13_4177 0.11 -2.1 4,689,242 - PfGW456L13_4177 0.11 -2.6 4,689,242 - PfGW456L13_4177 0.11 +0.3
Or see this region's nucleotide sequence