Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3497

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3495 and PfGW456L13_3496 are separated by 28 nucleotidesPfGW456L13_3496 and PfGW456L13_3497 are separated by 182 nucleotidesPfGW456L13_3497 and PfGW456L13_3498 are separated by 144 nucleotides PfGW456L13_3495 - FIG01111987: hypothetical protein, at 3,935,290 to 3,935,673 _3495 PfGW456L13_3496 - Transcriptional regulator, TetR family, at 3,935,702 to 3,936,289 _3496 PfGW456L13_3497 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 3,936,472 to 3,937,437 _3497 PfGW456L13_3498 - Predicted aminoglycoside phosphotransferase, at 3,937,582 to 3,938,649 _3498 Position (kb) 3936 3937 3938Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3935.546 kb on - strand, within PfGW456L13_3495at 3935.568 kb on + strand, within PfGW456L13_3495at 3935.569 kb on - strand, within PfGW456L13_3495at 3935.662 kb on + strandat 3935.984 kb on + strand, within PfGW456L13_3496at 3935.984 kb on + strand, within PfGW456L13_3496at 3935.985 kb on - strand, within PfGW456L13_3496at 3935.985 kb on - strand, within PfGW456L13_3496at 3935.985 kb on - strand, within PfGW456L13_3496at 3936.090 kb on - strand, within PfGW456L13_3496at 3936.182 kb on + strand, within PfGW456L13_3496at 3936.327 kb on + strandat 3936.328 kb on - strandat 3936.328 kb on - strandat 3936.337 kb on + strandat 3936.515 kb on - strandat 3936.522 kb on + strandat 3936.643 kb on + strandat 3936.644 kb on - strand, within PfGW456L13_3497at 3936.644 kb on - strand, within PfGW456L13_3497at 3936.644 kb on - strand, within PfGW456L13_3497at 3936.828 kb on - strand, within PfGW456L13_3497at 3936.979 kb on + strand, within PfGW456L13_3497at 3937.456 kb on + strandat 3937.457 kb on - strandat 3937.457 kb on - strandat 3937.457 kb on - strandat 3937.492 kb on + strandat 3937.492 kb on + strandat 3937.492 kb on + strandat 3937.492 kb on + strandat 3937.492 kb on + strandat 3937.492 kb on + strandat 3937.492 kb on + strandat 3937.492 kb on + strandat 3937.493 kb on - strandat 3937.493 kb on - strandat 3937.493 kb on - strandat 3937.493 kb on - strandat 3937.494 kb on + strandat 3937.494 kb on + strandat 3937.494 kb on + strandat 3937.494 kb on + strandat 3937.495 kb on - strandat 3937.513 kb on + strandat 3937.513 kb on + strandat 3937.513 kb on + strandat 3937.514 kb on - strandat 3937.514 kb on - strandat 3937.534 kb on - strandat 3937.534 kb on - strandat 3937.538 kb on + strandat 3937.546 kb on - strandat 3937.546 kb on - strandat 3937.591 kb on - strandat 3937.591 kb on - strandat 3937.729 kb on + strand, within PfGW456L13_3498at 3937.729 kb on + strand, within PfGW456L13_3498at 3937.730 kb on - strand, within PfGW456L13_3498at 3937.730 kb on - strand, within PfGW456L13_3498at 3937.730 kb on - strandat 3937.730 kb on - strand, within PfGW456L13_3498at 3937.730 kb on - strand, within PfGW456L13_3498at 3937.870 kb on + strand, within PfGW456L13_3498at 3937.870 kb on + strand, within PfGW456L13_3498at 3937.912 kb on + strand, within PfGW456L13_3498at 3937.912 kb on + strand, within PfGW456L13_3498at 3937.912 kb on + strand, within PfGW456L13_3498at 3937.912 kb on + strand, within PfGW456L13_3498at 3937.912 kb on + strand, within PfGW456L13_3498at 3937.912 kb on + strand, within PfGW456L13_3498at 3937.913 kb on - strand, within PfGW456L13_3498at 3937.913 kb on - strand, within PfGW456L13_3498at 3937.913 kb on - strand, within PfGW456L13_3498at 3937.913 kb on - strandat 3937.913 kb on - strand, within PfGW456L13_3498at 3937.913 kb on - strand, within PfGW456L13_3498at 3937.913 kb on - strand, within PfGW456L13_3498at 3937.913 kb on - strand, within PfGW456L13_3498at 3938.044 kb on + strand, within PfGW456L13_3498at 3938.045 kb on - strand, within PfGW456L13_3498at 3938.045 kb on - strand, within PfGW456L13_3498at 3938.348 kb on - strand, within PfGW456L13_3498

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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3,935,546 - PfGW456L13_3495 0.67 -0.6
3,935,568 + PfGW456L13_3495 0.72 +0.0
3,935,569 - PfGW456L13_3495 0.73 +0.8
3,935,662 + -1.4
3,935,984 + PfGW456L13_3496 0.48 +0.2
3,935,984 + PfGW456L13_3496 0.48 +0.3
3,935,985 - PfGW456L13_3496 0.48 -0.3
3,935,985 - PfGW456L13_3496 0.48 +1.1
3,935,985 - PfGW456L13_3496 0.48 -0.6
3,936,090 - PfGW456L13_3496 0.66 -0.5
3,936,182 + PfGW456L13_3496 0.82 -1.2
3,936,327 + +2.1
3,936,328 - +0.7
3,936,328 - +0.7
3,936,337 + -1.4
3,936,515 - +0.7
3,936,522 + -0.3
3,936,643 + +1.3
3,936,644 - PfGW456L13_3497 0.18 -0.5
3,936,644 - PfGW456L13_3497 0.18 +0.1
3,936,644 - PfGW456L13_3497 0.18 -0.3
3,936,828 - PfGW456L13_3497 0.37 +0.9
3,936,979 + PfGW456L13_3497 0.52 +0.4
3,937,456 + +0.2
3,937,457 - +0.4
3,937,457 - +0.4
3,937,457 - -3.0
3,937,492 + +0.6
3,937,492 + -0.7
3,937,492 + +0.2
3,937,492 + +1.1
3,937,492 + -0.8
3,937,492 + -0.8
3,937,492 + +0.3
3,937,492 + -0.2
3,937,493 - -0.2
3,937,493 - +1.3
3,937,493 - +0.2
3,937,493 - -0.2
3,937,494 + +0.1
3,937,494 + +0.2
3,937,494 + +0.1
3,937,494 + +0.7
3,937,495 - +0.4
3,937,513 + -1.6
3,937,513 + +0.1
3,937,513 + -0.4
3,937,514 - -0.9
3,937,514 - -1.4
3,937,534 - -1.1
3,937,534 - +0.0
3,937,538 + +0.8
3,937,546 - -0.9
3,937,546 - +1.7
3,937,591 - -1.5
3,937,591 - -0.3
3,937,729 + PfGW456L13_3498 0.14 +0.7
3,937,729 + PfGW456L13_3498 0.14 -0.6
3,937,730 - PfGW456L13_3498 0.14 -1.5
3,937,730 - PfGW456L13_3498 0.14 +0.5
3,937,730 - +1.3
3,937,730 - PfGW456L13_3498 0.14 +0.7
3,937,730 - PfGW456L13_3498 0.14 +0.1
3,937,870 + PfGW456L13_3498 0.27 +0.7
3,937,870 + PfGW456L13_3498 0.27 +0.9
3,937,912 + PfGW456L13_3498 0.31 +1.0
3,937,912 + PfGW456L13_3498 0.31 -1.1
3,937,912 + PfGW456L13_3498 0.31 -0.5
3,937,912 + PfGW456L13_3498 0.31 +1.5
3,937,912 + PfGW456L13_3498 0.31 +0.4
3,937,912 + PfGW456L13_3498 0.31 -0.9
3,937,913 - PfGW456L13_3498 0.31 +0.7
3,937,913 - PfGW456L13_3498 0.31 -0.5
3,937,913 - PfGW456L13_3498 0.31 +0.2
3,937,913 - -0.3
3,937,913 - PfGW456L13_3498 0.31 -2.0
3,937,913 - PfGW456L13_3498 0.31 -1.0
3,937,913 - PfGW456L13_3498 0.31 -0.0
3,937,913 - PfGW456L13_3498 0.31 -0.1
3,938,044 + PfGW456L13_3498 0.43 +0.7
3,938,045 - PfGW456L13_3498 0.43 +0.1
3,938,045 - PfGW456L13_3498 0.43 +0.5
3,938,348 - PfGW456L13_3498 0.72 +0.7

Or see this region's nucleotide sequence