Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3495 and PfGW456L13_3496 are separated by 28 nucleotides PfGW456L13_3496 and PfGW456L13_3497 are separated by 182 nucleotides PfGW456L13_3497 and PfGW456L13_3498 are separated by 144 nucleotides
PfGW456L13_3495 - FIG01111987: hypothetical protein, at 3,935,290 to 3,935,673
_3495
PfGW456L13_3496 - Transcriptional regulator, TetR family, at 3,935,702 to 3,936,289
_3496
PfGW456L13_3497 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 3,936,472 to 3,937,437
_3497
PfGW456L13_3498 - Predicted aminoglycoside phosphotransferase, at 3,937,582 to 3,938,649
_3498
Position (kb)
3936
3937
3938 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3935.546 kb on - strand, within PfGW456L13_3495 at 3935.568 kb on + strand, within PfGW456L13_3495 at 3935.569 kb on - strand, within PfGW456L13_3495 at 3935.662 kb on + strand at 3935.984 kb on + strand, within PfGW456L13_3496 at 3935.984 kb on + strand, within PfGW456L13_3496 at 3935.985 kb on - strand, within PfGW456L13_3496 at 3935.985 kb on - strand, within PfGW456L13_3496 at 3935.985 kb on - strand, within PfGW456L13_3496 at 3936.090 kb on - strand, within PfGW456L13_3496 at 3936.182 kb on + strand, within PfGW456L13_3496 at 3936.327 kb on + strand at 3936.328 kb on - strand at 3936.328 kb on - strand at 3936.337 kb on + strand at 3936.515 kb on - strand at 3936.522 kb on + strand at 3936.643 kb on + strand at 3936.644 kb on - strand, within PfGW456L13_3497 at 3936.644 kb on - strand, within PfGW456L13_3497 at 3936.644 kb on - strand, within PfGW456L13_3497 at 3936.828 kb on - strand, within PfGW456L13_3497 at 3936.979 kb on + strand, within PfGW456L13_3497 at 3937.456 kb on + strand at 3937.457 kb on - strand at 3937.457 kb on - strand at 3937.457 kb on - strand at 3937.492 kb on + strand at 3937.492 kb on + strand at 3937.492 kb on + strand at 3937.492 kb on + strand at 3937.492 kb on + strand at 3937.492 kb on + strand at 3937.492 kb on + strand at 3937.492 kb on + strand at 3937.493 kb on - strand at 3937.493 kb on - strand at 3937.493 kb on - strand at 3937.493 kb on - strand at 3937.494 kb on + strand at 3937.494 kb on + strand at 3937.494 kb on + strand at 3937.494 kb on + strand at 3937.495 kb on - strand at 3937.513 kb on + strand at 3937.513 kb on + strand at 3937.513 kb on + strand at 3937.514 kb on - strand at 3937.514 kb on - strand at 3937.534 kb on - strand at 3937.534 kb on - strand at 3937.538 kb on + strand at 3937.546 kb on - strand at 3937.546 kb on - strand at 3937.591 kb on - strand at 3937.591 kb on - strand at 3937.729 kb on + strand, within PfGW456L13_3498 at 3937.729 kb on + strand, within PfGW456L13_3498 at 3937.730 kb on - strand, within PfGW456L13_3498 at 3937.730 kb on - strand, within PfGW456L13_3498 at 3937.730 kb on - strand at 3937.730 kb on - strand, within PfGW456L13_3498 at 3937.730 kb on - strand, within PfGW456L13_3498 at 3937.870 kb on + strand, within PfGW456L13_3498 at 3937.870 kb on + strand, within PfGW456L13_3498 at 3937.912 kb on + strand, within PfGW456L13_3498 at 3937.912 kb on + strand, within PfGW456L13_3498 at 3937.912 kb on + strand, within PfGW456L13_3498 at 3937.912 kb on + strand, within PfGW456L13_3498 at 3937.912 kb on + strand, within PfGW456L13_3498 at 3937.912 kb on + strand, within PfGW456L13_3498 at 3937.913 kb on - strand, within PfGW456L13_3498 at 3937.913 kb on - strand, within PfGW456L13_3498 at 3937.913 kb on - strand, within PfGW456L13_3498 at 3937.913 kb on - strand at 3937.913 kb on - strand, within PfGW456L13_3498 at 3937.913 kb on - strand, within PfGW456L13_3498 at 3937.913 kb on - strand, within PfGW456L13_3498 at 3937.913 kb on - strand, within PfGW456L13_3498 at 3938.044 kb on + strand, within PfGW456L13_3498 at 3938.045 kb on - strand, within PfGW456L13_3498 at 3938.045 kb on - strand, within PfGW456L13_3498 at 3938.348 kb on - strand, within PfGW456L13_3498
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 3,935,546 - PfGW456L13_3495 0.67 -0.6 3,935,568 + PfGW456L13_3495 0.72 +0.0 3,935,569 - PfGW456L13_3495 0.73 +0.8 3,935,662 + -1.4 3,935,984 + PfGW456L13_3496 0.48 +0.2 3,935,984 + PfGW456L13_3496 0.48 +0.3 3,935,985 - PfGW456L13_3496 0.48 -0.3 3,935,985 - PfGW456L13_3496 0.48 +1.1 3,935,985 - PfGW456L13_3496 0.48 -0.6 3,936,090 - PfGW456L13_3496 0.66 -0.5 3,936,182 + PfGW456L13_3496 0.82 -1.2 3,936,327 + +2.1 3,936,328 - +0.7 3,936,328 - +0.7 3,936,337 + -1.4 3,936,515 - +0.7 3,936,522 + -0.3 3,936,643 + +1.3 3,936,644 - PfGW456L13_3497 0.18 -0.5 3,936,644 - PfGW456L13_3497 0.18 +0.1 3,936,644 - PfGW456L13_3497 0.18 -0.3 3,936,828 - PfGW456L13_3497 0.37 +0.9 3,936,979 + PfGW456L13_3497 0.52 +0.4 3,937,456 + +0.2 3,937,457 - +0.4 3,937,457 - +0.4 3,937,457 - -3.0 3,937,492 + +0.6 3,937,492 + -0.7 3,937,492 + +0.2 3,937,492 + +1.1 3,937,492 + -0.8 3,937,492 + -0.8 3,937,492 + +0.3 3,937,492 + -0.2 3,937,493 - -0.2 3,937,493 - +1.3 3,937,493 - +0.2 3,937,493 - -0.2 3,937,494 + +0.1 3,937,494 + +0.2 3,937,494 + +0.1 3,937,494 + +0.7 3,937,495 - +0.4 3,937,513 + -1.6 3,937,513 + +0.1 3,937,513 + -0.4 3,937,514 - -0.9 3,937,514 - -1.4 3,937,534 - -1.1 3,937,534 - +0.0 3,937,538 + +0.8 3,937,546 - -0.9 3,937,546 - +1.7 3,937,591 - -1.5 3,937,591 - -0.3 3,937,729 + PfGW456L13_3498 0.14 +0.7 3,937,729 + PfGW456L13_3498 0.14 -0.6 3,937,730 - PfGW456L13_3498 0.14 -1.5 3,937,730 - PfGW456L13_3498 0.14 +0.5 3,937,730 - +1.3 3,937,730 - PfGW456L13_3498 0.14 +0.7 3,937,730 - PfGW456L13_3498 0.14 +0.1 3,937,870 + PfGW456L13_3498 0.27 +0.7 3,937,870 + PfGW456L13_3498 0.27 +0.9 3,937,912 + PfGW456L13_3498 0.31 +1.0 3,937,912 + PfGW456L13_3498 0.31 -1.1 3,937,912 + PfGW456L13_3498 0.31 -0.5 3,937,912 + PfGW456L13_3498 0.31 +1.5 3,937,912 + PfGW456L13_3498 0.31 +0.4 3,937,912 + PfGW456L13_3498 0.31 -0.9 3,937,913 - PfGW456L13_3498 0.31 +0.7 3,937,913 - PfGW456L13_3498 0.31 -0.5 3,937,913 - PfGW456L13_3498 0.31 +0.2 3,937,913 - -0.3 3,937,913 - PfGW456L13_3498 0.31 -2.0 3,937,913 - PfGW456L13_3498 0.31 -1.0 3,937,913 - PfGW456L13_3498 0.31 -0.0 3,937,913 - PfGW456L13_3498 0.31 -0.1 3,938,044 + PfGW456L13_3498 0.43 +0.7 3,938,045 - PfGW456L13_3498 0.43 +0.1 3,938,045 - PfGW456L13_3498 0.43 +0.5 3,938,348 - PfGW456L13_3498 0.72 +0.7
Or see this region's nucleotide sequence