Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3388

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3387 and PfGW456L13_3388 are separated by 42 nucleotidesPfGW456L13_3388 and PfGW456L13_3389 overlap by 4 nucleotides PfGW456L13_3387 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 3,803,999 to 3,805,123 _3387 PfGW456L13_3388 - Enoyl-CoA hydratase (EC 4.2.1.17), at 3,805,166 to 3,805,966 _3388 PfGW456L13_3389 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 3,805,963 to 3,807,036 _3389 Position (kb) 3805 3806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3804.342 kb on + strand, within PfGW456L13_3387at 3804.342 kb on + strand, within PfGW456L13_3387at 3804.433 kb on - strand, within PfGW456L13_3387at 3804.483 kb on - strand, within PfGW456L13_3387at 3804.483 kb on - strand, within PfGW456L13_3387at 3804.604 kb on + strand, within PfGW456L13_3387at 3804.605 kb on - strand, within PfGW456L13_3387at 3804.684 kb on + strand, within PfGW456L13_3387at 3804.685 kb on - strand, within PfGW456L13_3387at 3804.685 kb on - strand, within PfGW456L13_3387at 3804.685 kb on - strand, within PfGW456L13_3387at 3804.685 kb on - strand, within PfGW456L13_3387at 3804.837 kb on + strand, within PfGW456L13_3387at 3804.837 kb on + strand, within PfGW456L13_3387at 3804.838 kb on - strand, within PfGW456L13_3387at 3804.838 kb on - strand, within PfGW456L13_3387at 3805.044 kb on + strandat 3805.045 kb on - strandat 3805.112 kb on + strandat 3805.113 kb on - strandat 3805.164 kb on - strandat 3805.164 kb on - strandat 3805.291 kb on + strand, within PfGW456L13_3388at 3805.291 kb on + strand, within PfGW456L13_3388at 3805.291 kb on + strand, within PfGW456L13_3388at 3805.292 kb on - strand, within PfGW456L13_3388at 3805.292 kb on - strand, within PfGW456L13_3388at 3805.292 kb on - strand, within PfGW456L13_3388at 3805.292 kb on - strand, within PfGW456L13_3388at 3805.292 kb on - strand, within PfGW456L13_3388at 3805.292 kb on - strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strandat 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.668 kb on + strand, within PfGW456L13_3388at 3805.669 kb on - strand, within PfGW456L13_3388at 3805.669 kb on - strand, within PfGW456L13_3388at 3805.684 kb on + strand, within PfGW456L13_3388at 3805.685 kb on - strand, within PfGW456L13_3388at 3805.704 kb on + strand, within PfGW456L13_3388at 3805.705 kb on - strand, within PfGW456L13_3388at 3805.705 kb on - strand, within PfGW456L13_3388at 3805.705 kb on - strand, within PfGW456L13_3388at 3805.708 kb on + strand, within PfGW456L13_3388at 3805.709 kb on - strand, within PfGW456L13_3388at 3805.723 kb on - strand, within PfGW456L13_3388at 3805.838 kb on + strand, within PfGW456L13_3388at 3805.838 kb on + strand, within PfGW456L13_3388at 3805.838 kb on + strand, within PfGW456L13_3388at 3806.027 kb on + strandat 3806.388 kb on - strandat 3806.388 kb on - strand, within PfGW456L13_3389at 3806.407 kb on + strand, within PfGW456L13_3389at 3806.510 kb on - strand, within PfGW456L13_3389at 3806.589 kb on + strand, within PfGW456L13_3389at 3806.679 kb on - strand, within PfGW456L13_3389at 3806.849 kb on + strand, within PfGW456L13_3389at 3806.849 kb on + strand, within PfGW456L13_3389at 3806.849 kb on + strand, within PfGW456L13_3389at 3806.849 kb on + strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strandat 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strandat 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strandat 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.853 kb on + strand, within PfGW456L13_3389at 3806.853 kb on + strand, within PfGW456L13_3389at 3806.853 kb on + strand, within PfGW456L13_3389at 3806.853 kb on + strand, within PfGW456L13_3389at 3806.853 kb on + strand, within PfGW456L13_3389at 3806.854 kb on - strand, within PfGW456L13_3389at 3806.854 kb on - strand, within PfGW456L13_3389at 3806.854 kb on - strand, within PfGW456L13_3389at 3806.854 kb on - strand, within PfGW456L13_3389at 3806.854 kb on - strand, within PfGW456L13_3389at 3806.854 kb on - strand, within PfGW456L13_3389at 3806.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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3,804,342 + PfGW456L13_3387 0.30 +0.2
3,804,342 + PfGW456L13_3387 0.30 -2.2
3,804,433 - PfGW456L13_3387 0.39 +0.2
3,804,483 - PfGW456L13_3387 0.43 -0.2
3,804,483 - PfGW456L13_3387 0.43 -0.4
3,804,604 + PfGW456L13_3387 0.54 -1.4
3,804,605 - PfGW456L13_3387 0.54 -1.7
3,804,684 + PfGW456L13_3387 0.61 -0.3
3,804,685 - PfGW456L13_3387 0.61 +0.6
3,804,685 - PfGW456L13_3387 0.61 -1.6
3,804,685 - PfGW456L13_3387 0.61 -0.1
3,804,685 - PfGW456L13_3387 0.61 +1.8
3,804,837 + PfGW456L13_3387 0.74 -0.5
3,804,837 + PfGW456L13_3387 0.74 -0.3
3,804,838 - PfGW456L13_3387 0.75 +0.8
3,804,838 - PfGW456L13_3387 0.75 -0.9
3,805,044 + -0.1
3,805,045 - +0.4
3,805,112 + -0.8
3,805,113 - +0.5
3,805,164 - -0.2
3,805,164 - -0.4
3,805,291 + PfGW456L13_3388 0.16 -1.2
3,805,291 + PfGW456L13_3388 0.16 +0.3
3,805,291 + PfGW456L13_3388 0.16 -0.0
3,805,292 - PfGW456L13_3388 0.16 -0.5
3,805,292 - PfGW456L13_3388 0.16 +0.2
3,805,292 - PfGW456L13_3388 0.16 -0.1
3,805,292 - PfGW456L13_3388 0.16 +0.1
3,805,292 - PfGW456L13_3388 0.16 +1.7
3,805,292 - PfGW456L13_3388 0.16 -0.9
3,805,445 + PfGW456L13_3388 0.35 -0.8
3,805,445 + PfGW456L13_3388 0.35 +1.0
3,805,445 + PfGW456L13_3388 0.35 -1.1
3,805,445 + +0.7
3,805,445 + PfGW456L13_3388 0.35 -1.0
3,805,445 + PfGW456L13_3388 0.35 +0.3
3,805,445 + PfGW456L13_3388 0.35 +0.0
3,805,445 + PfGW456L13_3388 0.35 +1.5
3,805,445 + PfGW456L13_3388 0.35 -0.5
3,805,445 + PfGW456L13_3388 0.35 +0.3
3,805,446 - PfGW456L13_3388 0.35 +0.3
3,805,446 - PfGW456L13_3388 0.35 -1.4
3,805,446 - PfGW456L13_3388 0.35 -0.6
3,805,446 - PfGW456L13_3388 0.35 +0.7
3,805,446 - PfGW456L13_3388 0.35 -0.1
3,805,446 - PfGW456L13_3388 0.35 -1.0
3,805,446 - PfGW456L13_3388 0.35 +0.9
3,805,446 - PfGW456L13_3388 0.35 +1.2
3,805,446 - PfGW456L13_3388 0.35 +1.7
3,805,446 - PfGW456L13_3388 0.35 -0.8
3,805,668 + PfGW456L13_3388 0.63 -0.8
3,805,669 - PfGW456L13_3388 0.63 -1.6
3,805,669 - PfGW456L13_3388 0.63 +0.4
3,805,684 + PfGW456L13_3388 0.65 +0.1
3,805,685 - PfGW456L13_3388 0.65 -0.5
3,805,704 + PfGW456L13_3388 0.67 +0.7
3,805,705 - PfGW456L13_3388 0.67 -1.3
3,805,705 - PfGW456L13_3388 0.67 +0.5
3,805,705 - PfGW456L13_3388 0.67 +0.0
3,805,708 + PfGW456L13_3388 0.68 -0.2
3,805,709 - PfGW456L13_3388 0.68 -0.0
3,805,723 - PfGW456L13_3388 0.70 +0.1
3,805,838 + PfGW456L13_3388 0.84 -0.9
3,805,838 + PfGW456L13_3388 0.84 +0.4
3,805,838 + PfGW456L13_3388 0.84 -0.6
3,806,027 + +1.0
3,806,388 - -0.9
3,806,388 - PfGW456L13_3389 0.40 +0.4
3,806,407 + PfGW456L13_3389 0.41 -0.1
3,806,510 - PfGW456L13_3389 0.51 +0.9
3,806,589 + PfGW456L13_3389 0.58 -0.4
3,806,679 - PfGW456L13_3389 0.67 -1.2
3,806,849 + PfGW456L13_3389 0.82 +0.1
3,806,849 + PfGW456L13_3389 0.82 -1.1
3,806,849 + PfGW456L13_3389 0.82 +0.1
3,806,849 + PfGW456L13_3389 0.82 +0.3
3,806,850 - PfGW456L13_3389 0.83 -0.9
3,806,850 - PfGW456L13_3389 0.83 -0.4
3,806,850 - PfGW456L13_3389 0.83 -0.4
3,806,850 - PfGW456L13_3389 0.83 +0.5
3,806,850 - PfGW456L13_3389 0.83 -0.3
3,806,850 - PfGW456L13_3389 0.83 -0.5
3,806,850 - +0.4
3,806,850 - PfGW456L13_3389 0.83 -0.9
3,806,850 - PfGW456L13_3389 0.83 -0.1
3,806,850 - PfGW456L13_3389 0.83 -0.5
3,806,850 - PfGW456L13_3389 0.83 -0.3
3,806,850 - +0.7
3,806,850 - PfGW456L13_3389 0.83 -0.5
3,806,850 - PfGW456L13_3389 0.83 +0.6
3,806,850 - +0.1
3,806,850 - PfGW456L13_3389 0.83 -0.3
3,806,850 - PfGW456L13_3389 0.83 -0.2
3,806,850 - PfGW456L13_3389 0.83 +0.5
3,806,850 - PfGW456L13_3389 0.83 -0.4
3,806,850 - PfGW456L13_3389 0.83 +0.7
3,806,850 - PfGW456L13_3389 0.83 -0.1
3,806,850 - PfGW456L13_3389 0.83 +0.1
3,806,850 - PfGW456L13_3389 0.83 +1.2
3,806,850 - PfGW456L13_3389 0.83 +1.0
3,806,850 - PfGW456L13_3389 0.83 -0.2
3,806,853 + PfGW456L13_3389 0.83 +0.9
3,806,853 + PfGW456L13_3389 0.83 +0.0
3,806,853 + PfGW456L13_3389 0.83 -2.0
3,806,853 + PfGW456L13_3389 0.83 -3.1
3,806,853 + PfGW456L13_3389 0.83 -1.1
3,806,854 - PfGW456L13_3389 0.83 +0.2
3,806,854 - PfGW456L13_3389 0.83 -0.4
3,806,854 - PfGW456L13_3389 0.83 -0.6
3,806,854 - PfGW456L13_3389 0.83 -0.7
3,806,854 - PfGW456L13_3389 0.83 +0.8
3,806,854 - PfGW456L13_3389 0.83 +0.8
3,806,936 - +0.8

Or see this region's nucleotide sequence