Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_294 and PfGW456L13_295 are separated by 59 nucleotides PfGW456L13_295 and PfGW456L13_296 are separated by 192 nucleotides PfGW456L13_296 and PfGW456L13_297 are separated by 10 nucleotides PfGW456L13_297 and PfGW456L13_298 are separated by 245 nucleotides
PfGW456L13_294 - Polyhydroxyalkanoic acid synthase, at 345,897 to 347,579
_294
PfGW456L13_295 - Transcriptional regulator PhaD, at 347,639 to 348,259
_295
PfGW456L13_296 - Polyhydroxyalkanoate granule-associated protein PhaF, at 348,452 to 349,288
_296
PfGW456L13_297 - polyhydroxyalkanoate granule-associated protein PhaI, at 349,299 to 349,721
_297
PfGW456L13_298 - FIG00954300: hypothetical protein, at 349,967 to 350,242
_298
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 347.533 kb on - strand at 347.558 kb on + strand at 347.562 kb on + strand at 347.562 kb on + strand at 347.562 kb on + strand at 347.562 kb on + strand at 347.562 kb on + strand at 347.562 kb on + strand at 347.562 kb on + strand at 347.562 kb on + strand at 347.562 kb on + strand at 347.563 kb on - strand at 347.563 kb on - strand at 347.563 kb on - strand at 347.563 kb on - strand at 347.563 kb on - strand at 347.563 kb on - strand at 347.563 kb on - strand at 347.563 kb on - strand at 347.563 kb on - strand at 347.563 kb on - strand at 347.563 kb on - strand at 347.627 kb on + strand at 347.628 kb on - strand at 347.628 kb on - strand at 347.756 kb on + strand, within PfGW456L13_295 at 347.757 kb on - strand, within PfGW456L13_295 at 347.759 kb on + strand, within PfGW456L13_295 at 347.760 kb on - strand, within PfGW456L13_295 at 347.760 kb on - strand, within PfGW456L13_295 at 348.119 kb on + strand, within PfGW456L13_295 at 348.165 kb on - strand, within PfGW456L13_295 at 348.165 kb on - strand, within PfGW456L13_295 at 348.240 kb on - strand at 348.794 kb on - strand, within PfGW456L13_296 at 349.191 kb on + strand at 349.192 kb on - strand, within PfGW456L13_296 at 349.200 kb on - strand, within PfGW456L13_296 at 349.392 kb on - strand, within PfGW456L13_297 at 349.404 kb on - strand, within PfGW456L13_297 at 349.404 kb on - strand, within PfGW456L13_297 at 349.404 kb on - strand, within PfGW456L13_297 at 349.654 kb on + strand, within PfGW456L13_297 at 349.654 kb on + strand, within PfGW456L13_297 at 349.710 kb on - strand at 349.787 kb on - strand at 349.825 kb on + strand at 349.825 kb on + strand at 349.825 kb on + strand at 349.825 kb on + strand at 349.826 kb on - strand at 349.826 kb on - strand at 349.826 kb on - strand at 349.826 kb on - strand at 349.826 kb on - strand at 349.955 kb on + strand at 349.955 kb on + strand at 349.956 kb on - strand at 349.982 kb on - strand at 350.148 kb on + strand, within PfGW456L13_298 at 350.230 kb on + strand at 350.230 kb on + strand at 350.231 kb on - strand at 350.231 kb on - strand at 350.231 kb on - strand at 350.231 kb on - strand at 350.231 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 347,533 - -0.1 347,558 + -0.9 347,562 + -0.8 347,562 + +0.7 347,562 + +0.4 347,562 + +0.1 347,562 + -1.3 347,562 + -0.3 347,562 + +0.8 347,562 + +0.7 347,562 + +0.2 347,563 - -0.3 347,563 - +0.6 347,563 - -0.5 347,563 - +0.8 347,563 - +1.2 347,563 - +0.0 347,563 - -0.7 347,563 - -0.5 347,563 - +0.1 347,563 - +0.6 347,563 - +1.2 347,627 + -0.9 347,628 - -0.0 347,628 - -2.0 347,756 + PfGW456L13_295 0.19 -0.0 347,757 - PfGW456L13_295 0.19 +0.0 347,759 + PfGW456L13_295 0.19 -0.7 347,760 - PfGW456L13_295 0.19 -0.2 347,760 - PfGW456L13_295 0.19 -2.1 348,119 + PfGW456L13_295 0.77 +0.4 348,165 - PfGW456L13_295 0.85 +0.9 348,165 - PfGW456L13_295 0.85 +1.2 348,240 - +0.3 348,794 - PfGW456L13_296 0.41 +0.9 349,191 + -0.1 349,192 - PfGW456L13_296 0.88 +1.2 349,200 - PfGW456L13_296 0.89 +0.3 349,392 - PfGW456L13_297 0.22 +0.7 349,404 - PfGW456L13_297 0.25 +0.2 349,404 - PfGW456L13_297 0.25 -0.2 349,404 - PfGW456L13_297 0.25 -2.8 349,654 + PfGW456L13_297 0.84 +0.0 349,654 + PfGW456L13_297 0.84 -0.0 349,710 - -0.3 349,787 - -0.8 349,825 + -0.1 349,825 + -1.2 349,825 + +0.3 349,825 + -0.1 349,826 - +1.2 349,826 - +0.2 349,826 - -0.5 349,826 - -0.0 349,826 - -0.2 349,955 + +1.7 349,955 + -0.8 349,956 - -1.6 349,982 - -0.1 350,148 + PfGW456L13_298 0.66 +0.7 350,230 + +1.9 350,230 + +1.0 350,231 - +1.4 350,231 - -0.3 350,231 - +0.1 350,231 - +0.3 350,231 - -0.2
Or see this region's nucleotide sequence