Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_293

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_292 and PfGW456L13_293 are separated by 157 nucleotidesPfGW456L13_293 and PfGW456L13_294 are separated by 115 nucleotides PfGW456L13_292 - Polyhydroxyalkanoic acid synthase, at 343,090 to 344,769 _292 PfGW456L13_293 - Poly(3-hydroxyalkanoate) depolymerase, at 344,927 to 345,781 _293 PfGW456L13_294 - Polyhydroxyalkanoic acid synthase, at 345,897 to 347,579 _294 Position (kb) 344 345 346Strain fitness (log2 ratio) -2 -1 0 1 2at 344.015 kb on - strand, within PfGW456L13_292at 344.144 kb on - strand, within PfGW456L13_292at 344.157 kb on - strand, within PfGW456L13_292at 344.157 kb on - strand, within PfGW456L13_292at 344.221 kb on + strand, within PfGW456L13_292at 344.222 kb on - strand, within PfGW456L13_292at 344.222 kb on - strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.449 kb on - strand, within PfGW456L13_292at 344.467 kb on + strand, within PfGW456L13_292at 344.467 kb on + strand, within PfGW456L13_292at 344.467 kb on + strand, within PfGW456L13_292at 344.467 kb on + strand, within PfGW456L13_292at 344.467 kb on + strand, within PfGW456L13_292at 344.468 kb on - strand, within PfGW456L13_292at 344.468 kb on - strand, within PfGW456L13_292at 344.468 kb on - strand, within PfGW456L13_292at 344.569 kb on + strand, within PfGW456L13_292at 344.722 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.768 kb on - strandat 344.833 kb on + strandat 344.834 kb on - strandat 345.194 kb on + strand, within PfGW456L13_293at 345.195 kb on - strand, within PfGW456L13_293at 345.264 kb on - strand, within PfGW456L13_293at 345.374 kb on + strand, within PfGW456L13_293at 345.374 kb on + strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.416 kb on + strand, within PfGW456L13_293at 345.416 kb on + strand, within PfGW456L13_293at 345.416 kb on + strand, within PfGW456L13_293at 345.416 kb on + strand, within PfGW456L13_293at 345.417 kb on - strand, within PfGW456L13_293at 345.494 kb on + strand, within PfGW456L13_293at 345.497 kb on + strand, within PfGW456L13_293at 345.497 kb on + strand, within PfGW456L13_293at 345.497 kb on + strand, within PfGW456L13_293at 345.498 kb on - strand, within PfGW456L13_293at 345.498 kb on - strand, within PfGW456L13_293at 345.570 kb on + strand, within PfGW456L13_293at 345.570 kb on + strand, within PfGW456L13_293at 345.571 kb on - strand, within PfGW456L13_293at 345.779 kb on + strandat 345.779 kb on + strandat 345.780 kb on - strandat 345.780 kb on - strandat 345.839 kb on + strandat 345.839 kb on + strandat 345.840 kb on - strandat 345.840 kb on - strandat 345.840 kb on - strandat 345.870 kb on - strandat 345.965 kb on + strandat 346.004 kb on + strandat 346.004 kb on + strandat 346.004 kb on + strandat 346.005 kb on - strandat 346.005 kb on - strandat 346.185 kb on + strand, within PfGW456L13_294at 346.186 kb on - strand, within PfGW456L13_294at 346.190 kb on + strand, within PfGW456L13_294at 346.190 kb on + strand, within PfGW456L13_294at 346.190 kb on + strand, within PfGW456L13_294at 346.190 kb on + strand, within PfGW456L13_294at 346.190 kb on + strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.512 kb on + strand, within PfGW456L13_294at 346.536 kb on + strand, within PfGW456L13_294at 346.537 kb on - strand, within PfGW456L13_294at 346.578 kb on + strand, within PfGW456L13_294at 346.578 kb on + strand, within PfGW456L13_294at 346.579 kb on - strand, within PfGW456L13_294at 346.579 kb on - strand, within PfGW456L13_294at 346.582 kb on - strand, within PfGW456L13_294at 346.582 kb on - strand, within PfGW456L13_294at 346.621 kb on - strand, within PfGW456L13_294at 346.705 kb on - strand, within PfGW456L13_294at 346.705 kb on - strand, within PfGW456L13_294at 346.705 kb on - strand, within PfGW456L13_294at 346.717 kb on + strand, within PfGW456L13_294at 346.718 kb on - strand, within PfGW456L13_294

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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344,015 - PfGW456L13_292 0.55 +0.4
344,144 - PfGW456L13_292 0.63 -0.5
344,157 - PfGW456L13_292 0.64 +0.2
344,157 - PfGW456L13_292 0.64 +0.2
344,221 + PfGW456L13_292 0.67 +0.7
344,222 - PfGW456L13_292 0.67 +0.2
344,222 - PfGW456L13_292 0.67 +0.8
344,236 + PfGW456L13_292 0.68 -0.3
344,236 + PfGW456L13_292 0.68 +1.2
344,236 + PfGW456L13_292 0.68 -0.1
344,236 + PfGW456L13_292 0.68 +0.6
344,236 + PfGW456L13_292 0.68 +1.3
344,236 + PfGW456L13_292 0.68 -0.6
344,236 + PfGW456L13_292 0.68 +0.1
344,236 + PfGW456L13_292 0.68 -0.2
344,236 + PfGW456L13_292 0.68 -0.7
344,236 + PfGW456L13_292 0.68 +0.3
344,237 - PfGW456L13_292 0.68 +0.0
344,237 - PfGW456L13_292 0.68 +0.7
344,237 - PfGW456L13_292 0.68 -0.1
344,237 - PfGW456L13_292 0.68 +0.5
344,237 - PfGW456L13_292 0.68 +0.4
344,237 - PfGW456L13_292 0.68 +0.4
344,237 - PfGW456L13_292 0.68 +0.5
344,237 - PfGW456L13_292 0.68 +0.2
344,449 - PfGW456L13_292 0.81 +0.3
344,467 + PfGW456L13_292 0.82 +0.0
344,467 + PfGW456L13_292 0.82 -1.3
344,467 + PfGW456L13_292 0.82 +0.6
344,467 + PfGW456L13_292 0.82 +1.6
344,467 + PfGW456L13_292 0.82 +1.0
344,468 - PfGW456L13_292 0.82 -0.3
344,468 - PfGW456L13_292 0.82 -1.5
344,468 - PfGW456L13_292 0.82 +1.0
344,569 + PfGW456L13_292 0.88 +1.0
344,722 + +0.4
344,752 + -0.1
344,752 + -1.2
344,752 + -0.1
344,752 + +0.2
344,752 + +0.7
344,752 + -0.1
344,752 + +0.7
344,752 + -0.8
344,752 + -0.8
344,752 + -0.0
344,752 + -0.0
344,752 + -0.0
344,752 + +0.3
344,752 + -0.3
344,752 + +0.3
344,752 + +0.7
344,753 - +0.2
344,753 - +0.1
344,753 - +0.4
344,753 - +0.6
344,753 - +0.9
344,753 - +0.3
344,753 - +0.5
344,753 - -0.3
344,753 - +0.6
344,753 - -0.1
344,768 - -0.7
344,833 + -0.3
344,834 - +1.2
345,194 + PfGW456L13_293 0.31 -0.0
345,195 - PfGW456L13_293 0.31 -0.8
345,264 - PfGW456L13_293 0.39 -0.7
345,374 + PfGW456L13_293 0.52 +0.4
345,374 + PfGW456L13_293 0.52 -0.1
345,375 - PfGW456L13_293 0.52 +0.5
345,375 - PfGW456L13_293 0.52 +1.4
345,375 - PfGW456L13_293 0.52 +0.3
345,375 - PfGW456L13_293 0.52 -1.8
345,375 - PfGW456L13_293 0.52 +0.3
345,375 - PfGW456L13_293 0.52 -0.1
345,416 + PfGW456L13_293 0.57 -1.8
345,416 + PfGW456L13_293 0.57 -1.1
345,416 + PfGW456L13_293 0.57 +1.0
345,416 + PfGW456L13_293 0.57 -1.2
345,417 - PfGW456L13_293 0.57 +1.7
345,494 + PfGW456L13_293 0.66 -0.2
345,497 + PfGW456L13_293 0.67 +0.7
345,497 + PfGW456L13_293 0.67 +0.3
345,497 + PfGW456L13_293 0.67 -0.1
345,498 - PfGW456L13_293 0.67 +0.5
345,498 - PfGW456L13_293 0.67 +0.5
345,570 + PfGW456L13_293 0.75 +0.3
345,570 + PfGW456L13_293 0.75 -0.3
345,571 - PfGW456L13_293 0.75 -0.3
345,779 + -1.6
345,779 + -0.4
345,780 - +0.5
345,780 - +0.6
345,839 + -0.4
345,839 + -0.7
345,840 - +0.1
345,840 - -1.4
345,840 - +0.1
345,870 - -1.0
345,965 + +0.6
346,004 + +0.5
346,004 + -0.4
346,004 + +0.7
346,005 - +0.5
346,005 - +1.0
346,185 + PfGW456L13_294 0.17 -1.3
346,186 - PfGW456L13_294 0.17 -1.2
346,190 + PfGW456L13_294 0.17 +0.1
346,190 + PfGW456L13_294 0.17 -0.1
346,190 + PfGW456L13_294 0.17 -0.3
346,190 + PfGW456L13_294 0.17 +0.4
346,190 + PfGW456L13_294 0.17 -0.3
346,191 - PfGW456L13_294 0.17 +0.0
346,191 - PfGW456L13_294 0.17 +2.0
346,191 - PfGW456L13_294 0.17 -0.1
346,191 - PfGW456L13_294 0.17 +1.1
346,191 - PfGW456L13_294 0.17 -0.1
346,191 - PfGW456L13_294 0.17 -0.4
346,191 - PfGW456L13_294 0.17 -1.5
346,191 - PfGW456L13_294 0.17 +0.2
346,512 + PfGW456L13_294 0.37 +1.0
346,536 + PfGW456L13_294 0.38 +0.7
346,537 - PfGW456L13_294 0.38 +0.1
346,578 + PfGW456L13_294 0.40 +0.4
346,578 + PfGW456L13_294 0.40 +0.4
346,579 - PfGW456L13_294 0.41 -0.0
346,579 - PfGW456L13_294 0.41 +1.2
346,582 - PfGW456L13_294 0.41 +0.1
346,582 - PfGW456L13_294 0.41 -1.2
346,621 - PfGW456L13_294 0.43 -0.0
346,705 - PfGW456L13_294 0.48 -0.6
346,705 - PfGW456L13_294 0.48 -0.1
346,705 - PfGW456L13_294 0.48 -0.4
346,717 + PfGW456L13_294 0.49 +0.7
346,718 - PfGW456L13_294 0.49 +0.3

Or see this region's nucleotide sequence