Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2927

Experiment: L-Phenylalanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_2926 and PfGW456L13_2927 are separated by 139 nucleotidesPfGW456L13_2927 and PfGW456L13_2928 are separated by 139 nucleotides PfGW456L13_2926 - Cointegrate resolution protein S, at 3,263,196 to 3,264,134 _2926 PfGW456L13_2927 - Alkyl hydroperoxide reductase protein C (EC 1.6.4.-), at 3,264,274 to 3,264,837 _2927 PfGW456L13_2928 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 3,264,977 to 3,266,539 _2928 Position (kb) 3264 3265Strain fitness (log2 ratio) -2 -1 0 1 2at 3263.329 kb on - strand, within PfGW456L13_2926at 3263.715 kb on + strand, within PfGW456L13_2926at 3263.716 kb on - strand, within PfGW456L13_2926at 3263.716 kb on - strand, within PfGW456L13_2926at 3263.720 kb on - strand, within PfGW456L13_2926at 3263.727 kb on - strand, within PfGW456L13_2926at 3263.760 kb on + strand, within PfGW456L13_2926at 3263.761 kb on - strand, within PfGW456L13_2926at 3263.761 kb on - strand, within PfGW456L13_2926at 3263.802 kb on + strand, within PfGW456L13_2926at 3263.802 kb on + strand, within PfGW456L13_2926at 3263.802 kb on + strand, within PfGW456L13_2926at 3263.802 kb on + strand, within PfGW456L13_2926at 3263.803 kb on - strand, within PfGW456L13_2926at 3263.803 kb on - strand, within PfGW456L13_2926at 3263.803 kb on - strand, within PfGW456L13_2926at 3263.803 kb on - strand, within PfGW456L13_2926at 3263.803 kb on - strand, within PfGW456L13_2926at 3263.804 kb on + strand, within PfGW456L13_2926at 3263.805 kb on - strand, within PfGW456L13_2926at 3263.805 kb on - strand, within PfGW456L13_2926at 3263.805 kb on - strand, within PfGW456L13_2926at 3263.958 kb on + strand, within PfGW456L13_2926at 3263.958 kb on + strand, within PfGW456L13_2926at 3263.958 kb on + strand, within PfGW456L13_2926at 3263.958 kb on + strand, within PfGW456L13_2926at 3263.958 kb on + strand, within PfGW456L13_2926at 3263.959 kb on - strand, within PfGW456L13_2926at 3263.959 kb on - strand, within PfGW456L13_2926at 3263.960 kb on + strand, within PfGW456L13_2926at 3263.961 kb on - strand, within PfGW456L13_2926at 3264.036 kb on + strand, within PfGW456L13_2926at 3264.036 kb on + strand, within PfGW456L13_2926at 3264.036 kb on + strand, within PfGW456L13_2926at 3264.036 kb on + strand, within PfGW456L13_2926at 3264.037 kb on - strand, within PfGW456L13_2926at 3264.037 kb on - strand, within PfGW456L13_2926at 3264.037 kb on - strand, within PfGW456L13_2926at 3264.037 kb on - strand, within PfGW456L13_2926at 3264.037 kb on - strand, within PfGW456L13_2926at 3264.037 kb on - strand, within PfGW456L13_2926at 3264.037 kb on - strand, within PfGW456L13_2926at 3264.037 kb on - strand, within PfGW456L13_2926at 3264.037 kb on - strand, within PfGW456L13_2926at 3264.037 kb on - strand, within PfGW456L13_2926at 3264.072 kb on + strandat 3264.073 kb on - strandat 3264.108 kb on - strandat 3264.132 kb on + strandat 3264.132 kb on + strandat 3264.149 kb on + strandat 3264.153 kb on - strandat 3264.155 kb on + strandat 3264.155 kb on + strandat 3264.156 kb on - strandat 3264.156 kb on - strandat 3264.156 kb on - strandat 3264.156 kb on - strandat 3264.156 kb on - strandat 3264.168 kb on + strandat 3264.250 kb on + strandat 3264.251 kb on - strandat 3264.279 kb on + strandat 3264.279 kb on + strandat 3264.339 kb on - strand, within PfGW456L13_2927at 3264.445 kb on + strand, within PfGW456L13_2927at 3264.445 kb on + strand, within PfGW456L13_2927at 3264.445 kb on + strand, within PfGW456L13_2927at 3264.445 kb on + strand, within PfGW456L13_2927at 3264.446 kb on - strand, within PfGW456L13_2927at 3264.446 kb on - strand, within PfGW456L13_2927at 3264.446 kb on - strand, within PfGW456L13_2927at 3264.446 kb on - strand, within PfGW456L13_2927at 3264.478 kb on + strand, within PfGW456L13_2927at 3264.478 kb on + strand, within PfGW456L13_2927at 3264.478 kb on + strand, within PfGW456L13_2927at 3264.478 kb on + strand, within PfGW456L13_2927at 3264.479 kb on - strand, within PfGW456L13_2927at 3264.479 kb on - strand, within PfGW456L13_2927at 3264.479 kb on - strand, within PfGW456L13_2927at 3264.553 kb on + strand, within PfGW456L13_2927at 3264.553 kb on + strand, within PfGW456L13_2927at 3264.554 kb on - strand, within PfGW456L13_2927at 3264.695 kb on + strand, within PfGW456L13_2927at 3264.695 kb on + strand, within PfGW456L13_2927at 3264.696 kb on - strand, within PfGW456L13_2927at 3264.696 kb on - strand, within PfGW456L13_2927at 3264.742 kb on + strand, within PfGW456L13_2927at 3264.742 kb on + strand, within PfGW456L13_2927at 3264.835 kb on + strandat 3264.835 kb on + strandat 3264.835 kb on + strandat 3264.835 kb on + strandat 3264.835 kb on + strandat 3264.835 kb on + strandat 3264.835 kb on + strandat 3264.835 kb on + strandat 3264.835 kb on + strandat 3264.836 kb on - strandat 3264.836 kb on - strandat 3264.836 kb on - strandat 3264.836 kb on - strandat 3264.836 kb on - strandat 3264.899 kb on - strandat 3264.947 kb on - strandat 3264.976 kb on + strandat 3264.976 kb on + strandat 3264.977 kb on - strandat 3264.977 kb on - strandat 3264.977 kb on - strandat 3265.126 kb on + strandat 3265.126 kb on + strandat 3265.126 kb on + strandat 3265.127 kb on - strandat 3265.343 kb on + strand, within PfGW456L13_2928at 3265.343 kb on + strand, within PfGW456L13_2928at 3265.343 kb on + strandat 3265.343 kb on + strand, within PfGW456L13_2928at 3265.343 kb on + strand, within PfGW456L13_2928at 3265.343 kb on + strand, within PfGW456L13_2928at 3265.344 kb on - strand, within PfGW456L13_2928at 3265.344 kb on - strand, within PfGW456L13_2928at 3265.344 kb on - strand, within PfGW456L13_2928at 3265.344 kb on - strand, within PfGW456L13_2928at 3265.344 kb on - strand, within PfGW456L13_2928at 3265.344 kb on - strand, within PfGW456L13_2928at 3265.344 kb on - strand, within PfGW456L13_2928at 3265.404 kb on + strand, within PfGW456L13_2928at 3265.496 kb on + strand, within PfGW456L13_2928at 3265.497 kb on - strand, within PfGW456L13_2928at 3265.497 kb on - strand, within PfGW456L13_2928at 3265.497 kb on - strand, within PfGW456L13_2928at 3265.497 kb on - strand, within PfGW456L13_2928at 3265.497 kb on - strand, within PfGW456L13_2928at 3265.497 kb on - strand, within PfGW456L13_2928at 3265.497 kb on - strand, within PfGW456L13_2928at 3265.497 kb on - strand, within PfGW456L13_2928at 3265.497 kb on - strand, within PfGW456L13_2928at 3265.662 kb on - strand, within PfGW456L13_2928at 3265.747 kb on + strand, within PfGW456L13_2928at 3265.747 kb on + strand, within PfGW456L13_2928at 3265.748 kb on - strand, within PfGW456L13_2928at 3265.748 kb on - strand, within PfGW456L13_2928at 3265.811 kb on + strand, within PfGW456L13_2928at 3265.811 kb on + strand, within PfGW456L13_2928

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
remove
3,263,329 - PfGW456L13_2926 0.14 +1.3
3,263,715 + PfGW456L13_2926 0.55 +0.9
3,263,716 - PfGW456L13_2926 0.55 +0.1
3,263,716 - PfGW456L13_2926 0.55 +0.7
3,263,720 - PfGW456L13_2926 0.56 +0.4
3,263,727 - PfGW456L13_2926 0.57 +0.6
3,263,760 + PfGW456L13_2926 0.60 +0.4
3,263,761 - PfGW456L13_2926 0.60 -0.1
3,263,761 - PfGW456L13_2926 0.60 +0.4
3,263,802 + PfGW456L13_2926 0.65 -1.0
3,263,802 + PfGW456L13_2926 0.65 +0.9
3,263,802 + PfGW456L13_2926 0.65 -0.0
3,263,802 + PfGW456L13_2926 0.65 -0.8
3,263,803 - PfGW456L13_2926 0.65 +0.4
3,263,803 - PfGW456L13_2926 0.65 -2.7
3,263,803 - PfGW456L13_2926 0.65 +0.2
3,263,803 - PfGW456L13_2926 0.65 -0.5
3,263,803 - PfGW456L13_2926 0.65 -0.7
3,263,804 + PfGW456L13_2926 0.65 +0.6
3,263,805 - PfGW456L13_2926 0.65 +0.7
3,263,805 - PfGW456L13_2926 0.65 +0.3
3,263,805 - PfGW456L13_2926 0.65 +0.8
3,263,958 + PfGW456L13_2926 0.81 -0.3
3,263,958 + PfGW456L13_2926 0.81 -1.0
3,263,958 + PfGW456L13_2926 0.81 +0.0
3,263,958 + PfGW456L13_2926 0.81 -0.3
3,263,958 + PfGW456L13_2926 0.81 -0.3
3,263,959 - PfGW456L13_2926 0.81 -0.5
3,263,959 - PfGW456L13_2926 0.81 -1.1
3,263,960 + PfGW456L13_2926 0.81 -0.1
3,263,961 - PfGW456L13_2926 0.81 +0.0
3,264,036 + PfGW456L13_2926 0.89 +0.6
3,264,036 + PfGW456L13_2926 0.89 -0.4
3,264,036 + PfGW456L13_2926 0.89 -1.3
3,264,036 + PfGW456L13_2926 0.89 -1.0
3,264,037 - PfGW456L13_2926 0.90 +0.3
3,264,037 - PfGW456L13_2926 0.90 -0.3
3,264,037 - PfGW456L13_2926 0.90 +0.1
3,264,037 - PfGW456L13_2926 0.90 -1.9
3,264,037 - PfGW456L13_2926 0.90 -1.0
3,264,037 - PfGW456L13_2926 0.90 -0.3
3,264,037 - PfGW456L13_2926 0.90 -0.4
3,264,037 - PfGW456L13_2926 0.90 -0.0
3,264,037 - PfGW456L13_2926 0.90 +0.7
3,264,037 - PfGW456L13_2926 0.90 -0.5
3,264,072 + +0.1
3,264,073 - +1.0
3,264,108 - -0.3
3,264,132 + +0.1
3,264,132 + -0.1
3,264,149 + -1.4
3,264,153 - -0.1
3,264,155 + -0.1
3,264,155 + +0.4
3,264,156 - +1.1
3,264,156 - -0.4
3,264,156 - +0.5
3,264,156 - +0.2
3,264,156 - +0.0
3,264,168 + +2.2
3,264,250 + -0.2
3,264,251 - +0.1
3,264,279 + +0.3
3,264,279 + -1.3
3,264,339 - PfGW456L13_2927 0.12 -0.9
3,264,445 + PfGW456L13_2927 0.30 -0.2
3,264,445 + PfGW456L13_2927 0.30 +0.4
3,264,445 + PfGW456L13_2927 0.30 -0.8
3,264,445 + PfGW456L13_2927 0.30 -2.3
3,264,446 - PfGW456L13_2927 0.30 -0.6
3,264,446 - PfGW456L13_2927 0.30 +0.7
3,264,446 - PfGW456L13_2927 0.30 -1.4
3,264,446 - PfGW456L13_2927 0.30 -1.1
3,264,478 + PfGW456L13_2927 0.36 -0.9
3,264,478 + PfGW456L13_2927 0.36 -0.3
3,264,478 + PfGW456L13_2927 0.36 +0.7
3,264,478 + PfGW456L13_2927 0.36 -0.2
3,264,479 - PfGW456L13_2927 0.36 -0.6
3,264,479 - PfGW456L13_2927 0.36 -0.3
3,264,479 - PfGW456L13_2927 0.36 -0.7
3,264,553 + PfGW456L13_2927 0.49 +0.9
3,264,553 + PfGW456L13_2927 0.49 +0.5
3,264,554 - PfGW456L13_2927 0.50 -0.9
3,264,695 + PfGW456L13_2927 0.75 -0.9
3,264,695 + PfGW456L13_2927 0.75 -1.1
3,264,696 - PfGW456L13_2927 0.75 -0.8
3,264,696 - PfGW456L13_2927 0.75 +0.4
3,264,742 + PfGW456L13_2927 0.83 -0.1
3,264,742 + PfGW456L13_2927 0.83 -1.8
3,264,835 + -0.0
3,264,835 + -0.7
3,264,835 + +0.2
3,264,835 + +0.0
3,264,835 + +1.0
3,264,835 + -0.1
3,264,835 + -0.2
3,264,835 + +0.4
3,264,835 + +0.1
3,264,836 - +1.0
3,264,836 - +0.1
3,264,836 - -0.1
3,264,836 - +0.2
3,264,836 - -0.1
3,264,899 - +2.2
3,264,947 - -0.3
3,264,976 + +0.1
3,264,976 + +0.5
3,264,977 - -0.2
3,264,977 - +0.5
3,264,977 - +0.8
3,265,126 + +0.1
3,265,126 + +0.9
3,265,126 + -0.3
3,265,127 - -0.2
3,265,343 + PfGW456L13_2928 0.23 -0.9
3,265,343 + PfGW456L13_2928 0.23 -0.0
3,265,343 + +1.3
3,265,343 + PfGW456L13_2928 0.23 -0.1
3,265,343 + PfGW456L13_2928 0.23 -1.2
3,265,343 + PfGW456L13_2928 0.23 -1.4
3,265,344 - PfGW456L13_2928 0.23 -0.5
3,265,344 - PfGW456L13_2928 0.23 +0.4
3,265,344 - PfGW456L13_2928 0.23 -1.4
3,265,344 - PfGW456L13_2928 0.23 -0.0
3,265,344 - PfGW456L13_2928 0.23 +0.0
3,265,344 - PfGW456L13_2928 0.23 +0.5
3,265,344 - PfGW456L13_2928 0.23 +0.6
3,265,404 + PfGW456L13_2928 0.27 +1.3
3,265,496 + PfGW456L13_2928 0.33 -0.9
3,265,497 - PfGW456L13_2928 0.33 -0.5
3,265,497 - PfGW456L13_2928 0.33 +0.3
3,265,497 - PfGW456L13_2928 0.33 -0.1
3,265,497 - PfGW456L13_2928 0.33 -0.3
3,265,497 - PfGW456L13_2928 0.33 -0.0
3,265,497 - PfGW456L13_2928 0.33 -0.4
3,265,497 - PfGW456L13_2928 0.33 -0.2
3,265,497 - PfGW456L13_2928 0.33 +1.3
3,265,497 - PfGW456L13_2928 0.33 -0.1
3,265,662 - PfGW456L13_2928 0.44 -0.3
3,265,747 + PfGW456L13_2928 0.49 +0.9
3,265,747 + PfGW456L13_2928 0.49 +0.5
3,265,748 - PfGW456L13_2928 0.49 -0.5
3,265,748 - PfGW456L13_2928 0.49 -1.2
3,265,811 + PfGW456L13_2928 0.53 -0.3
3,265,811 + PfGW456L13_2928 0.53 -1.7

Or see this region's nucleotide sequence