Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_292

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_290 and PfGW456L13_291 are separated by 213 nucleotidesPfGW456L13_291 and PfGW456L13_292 are separated by 259 nucleotidesPfGW456L13_292 and PfGW456L13_293 are separated by 157 nucleotides PfGW456L13_290 - ATP-dependent hsl protease ATP-binding subunit HslU, at 340,914 to 342,245 _290 PfGW456L13_291 - FIG028220: hypothetical protein co-occurring with HEAT repeat protein, at 342,459 to 342,830 _291 PfGW456L13_292 - Polyhydroxyalkanoic acid synthase, at 343,090 to 344,769 _292 PfGW456L13_293 - Poly(3-hydroxyalkanoate) depolymerase, at 344,927 to 345,781 _293 Position (kb) 343 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 342.183 kb on + strandat 342.184 kb on - strandat 342.234 kb on + strandat 342.235 kb on - strandat 342.236 kb on + strandat 342.237 kb on - strandat 342.243 kb on + strandat 342.244 kb on - strandat 342.250 kb on + strandat 342.251 kb on - strandat 342.251 kb on - strandat 342.251 kb on - strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.254 kb on + strandat 342.255 kb on - strandat 342.255 kb on - strandat 342.255 kb on - strandat 342.255 kb on - strandat 342.255 kb on - strandat 342.255 kb on - strandat 342.255 kb on - strandat 342.255 kb on - strandat 342.255 kb on - strandat 342.255 kb on - strandat 342.262 kb on + strandat 342.263 kb on - strandat 342.328 kb on - strandat 342.328 kb on - strandat 342.374 kb on - strandat 342.828 kb on + strandat 342.829 kb on - strandat 342.849 kb on + strandat 342.977 kb on + strandat 342.977 kb on + strandat 342.996 kb on + strandat 342.996 kb on + strandat 342.996 kb on + strandat 342.996 kb on + strandat 342.996 kb on + strandat 342.996 kb on + strandat 342.996 kb on + strandat 342.997 kb on - strandat 342.997 kb on - strandat 342.997 kb on - strandat 343.018 kb on + strandat 343.018 kb on + strandat 343.018 kb on + strandat 343.019 kb on - strandat 343.019 kb on - strandat 343.019 kb on - strandat 343.019 kb on - strandat 343.019 kb on - strandat 343.019 kb on - strandat 343.019 kb on - strandat 343.019 kb on - strandat 343.021 kb on + strandat 343.021 kb on + strandat 343.021 kb on + strandat 343.021 kb on + strandat 343.021 kb on + strandat 343.021 kb on + strandat 343.021 kb on + strandat 343.021 kb on + strandat 343.021 kb on + strandat 343.022 kb on - strandat 343.022 kb on - strandat 343.022 kb on - strandat 343.022 kb on - strandat 343.022 kb on - strandat 343.043 kb on + strandat 343.043 kb on + strandat 343.043 kb on + strandat 343.044 kb on - strandat 343.044 kb on - strandat 343.044 kb on - strandat 343.044 kb on - strandat 343.044 kb on - strandat 343.087 kb on + strandat 343.087 kb on + strandat 343.087 kb on + strandat 343.088 kb on - strandat 343.088 kb on - strandat 343.088 kb on - strandat 343.095 kb on + strandat 343.096 kb on - strandat 343.096 kb on - strandat 343.148 kb on + strandat 343.181 kb on + strandat 343.181 kb on + strandat 343.181 kb on + strandat 343.182 kb on - strandat 343.182 kb on - strandat 343.182 kb on - strandat 343.358 kb on - strand, within PfGW456L13_292at 343.358 kb on - strand, within PfGW456L13_292at 343.366 kb on + strand, within PfGW456L13_292at 343.366 kb on + strand, within PfGW456L13_292at 343.366 kb on + strand, within PfGW456L13_292at 343.367 kb on - strand, within PfGW456L13_292at 343.367 kb on - strand, within PfGW456L13_292at 343.378 kb on + strand, within PfGW456L13_292at 343.378 kb on + strand, within PfGW456L13_292at 343.378 kb on + strand, within PfGW456L13_292at 343.379 kb on - strand, within PfGW456L13_292at 343.379 kb on - strand, within PfGW456L13_292at 343.379 kb on - strand, within PfGW456L13_292at 343.379 kb on - strand, within PfGW456L13_292at 343.422 kb on + strand, within PfGW456L13_292at 343.423 kb on - strand, within PfGW456L13_292at 343.423 kb on - strand, within PfGW456L13_292at 343.705 kb on + strand, within PfGW456L13_292at 343.706 kb on - strand, within PfGW456L13_292at 343.706 kb on - strand, within PfGW456L13_292at 343.706 kb on - strand, within PfGW456L13_292at 343.774 kb on + strand, within PfGW456L13_292at 343.774 kb on + strand, within PfGW456L13_292at 343.775 kb on - strand, within PfGW456L13_292at 343.897 kb on + strand, within PfGW456L13_292at 343.897 kb on + strand, within PfGW456L13_292at 343.898 kb on - strand, within PfGW456L13_292at 343.898 kb on - strand, within PfGW456L13_292at 343.898 kb on - strand, within PfGW456L13_292at 343.898 kb on - strand, within PfGW456L13_292at 344.015 kb on - strand, within PfGW456L13_292at 344.144 kb on - strand, within PfGW456L13_292at 344.157 kb on - strand, within PfGW456L13_292at 344.157 kb on - strand, within PfGW456L13_292at 344.221 kb on + strand, within PfGW456L13_292at 344.222 kb on - strand, within PfGW456L13_292at 344.222 kb on - strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.236 kb on + strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.237 kb on - strand, within PfGW456L13_292at 344.449 kb on - strand, within PfGW456L13_292at 344.467 kb on + strand, within PfGW456L13_292at 344.467 kb on + strand, within PfGW456L13_292at 344.467 kb on + strand, within PfGW456L13_292at 344.467 kb on + strand, within PfGW456L13_292at 344.467 kb on + strand, within PfGW456L13_292at 344.468 kb on - strand, within PfGW456L13_292at 344.468 kb on - strand, within PfGW456L13_292at 344.468 kb on - strand, within PfGW456L13_292at 344.569 kb on + strand, within PfGW456L13_292at 344.722 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.753 kb on - strandat 344.768 kb on - strandat 344.833 kb on + strandat 344.834 kb on - strandat 345.194 kb on + strand, within PfGW456L13_293at 345.195 kb on - strand, within PfGW456L13_293at 345.264 kb on - strand, within PfGW456L13_293at 345.374 kb on + strand, within PfGW456L13_293at 345.374 kb on + strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.416 kb on + strand, within PfGW456L13_293at 345.416 kb on + strand, within PfGW456L13_293at 345.416 kb on + strand, within PfGW456L13_293at 345.416 kb on + strand, within PfGW456L13_293at 345.417 kb on - strand, within PfGW456L13_293at 345.494 kb on + strand, within PfGW456L13_293at 345.497 kb on + strand, within PfGW456L13_293at 345.497 kb on + strand, within PfGW456L13_293at 345.497 kb on + strand, within PfGW456L13_293at 345.498 kb on - strand, within PfGW456L13_293at 345.498 kb on - strand, within PfGW456L13_293at 345.570 kb on + strand, within PfGW456L13_293at 345.570 kb on + strand, within PfGW456L13_293at 345.571 kb on - strand, within PfGW456L13_293

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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342,183 + -2.1
342,184 - -0.7
342,234 + -2.3
342,235 - -0.5
342,236 + -1.0
342,237 - +0.5
342,243 + -0.2
342,244 - -0.6
342,250 + +0.5
342,251 - -1.7
342,251 - +0.4
342,251 - -0.9
342,254 + -0.9
342,254 + -0.4
342,254 + +0.3
342,254 + -0.1
342,254 + +0.0
342,254 + -0.3
342,254 + -0.4
342,254 + +0.2
342,254 + -0.8
342,254 + -0.2
342,254 + +0.6
342,254 + -0.8
342,254 + +1.1
342,254 + +0.0
342,255 - -0.2
342,255 - -1.2
342,255 - -0.0
342,255 - -0.0
342,255 - -0.7
342,255 - -0.5
342,255 - +0.7
342,255 - -1.1
342,255 - +0.3
342,255 - +0.5
342,262 + -0.2
342,263 - -0.9
342,328 - +1.7
342,328 - -0.2
342,374 - -2.3
342,828 + -1.4
342,829 - -0.5
342,849 + -0.2
342,977 + -0.0
342,977 + +0.0
342,996 + +0.2
342,996 + -0.2
342,996 + -0.7
342,996 + +0.3
342,996 + -0.1
342,996 + +0.5
342,996 + +0.8
342,997 - -0.0
342,997 - -0.5
342,997 - -0.4
343,018 + +0.5
343,018 + +0.9
343,018 + -0.4
343,019 - +0.1
343,019 - +1.1
343,019 - -0.9
343,019 - -0.5
343,019 - +0.8
343,019 - +0.4
343,019 - +0.5
343,019 - +1.2
343,021 + +0.2
343,021 + -1.3
343,021 + -0.2
343,021 + +0.1
343,021 + +0.1
343,021 + +0.4
343,021 + +0.1
343,021 + +0.3
343,021 + +0.4
343,022 - +0.3
343,022 - +0.5
343,022 - +1.1
343,022 - -0.9
343,022 - -0.2
343,043 + +0.4
343,043 + +0.6
343,043 + +0.6
343,044 - -0.7
343,044 - +0.2
343,044 - +0.5
343,044 - -0.0
343,044 - +0.0
343,087 + +0.5
343,087 + +0.6
343,087 + +0.1
343,088 - -1.3
343,088 - -0.1
343,088 - +0.5
343,095 + +2.0
343,096 - +0.9
343,096 - +0.3
343,148 + +1.0
343,181 + -0.4
343,181 + +0.2
343,181 + +0.6
343,182 - -0.1
343,182 - +1.8
343,182 - -0.5
343,358 - PfGW456L13_292 0.16 -2.8
343,358 - PfGW456L13_292 0.16 +0.3
343,366 + PfGW456L13_292 0.16 -0.6
343,366 + PfGW456L13_292 0.16 -0.4
343,366 + PfGW456L13_292 0.16 +0.6
343,367 - PfGW456L13_292 0.16 +1.2
343,367 - PfGW456L13_292 0.16 +1.5
343,378 + PfGW456L13_292 0.17 -0.7
343,378 + PfGW456L13_292 0.17 -1.0
343,378 + PfGW456L13_292 0.17 -0.4
343,379 - PfGW456L13_292 0.17 -0.1
343,379 - PfGW456L13_292 0.17 +0.7
343,379 - PfGW456L13_292 0.17 -0.0
343,379 - PfGW456L13_292 0.17 +0.7
343,422 + PfGW456L13_292 0.20 -1.5
343,423 - PfGW456L13_292 0.20 -0.4
343,423 - PfGW456L13_292 0.20 -0.3
343,705 + PfGW456L13_292 0.37 +0.1
343,706 - PfGW456L13_292 0.37 -0.7
343,706 - PfGW456L13_292 0.37 +0.3
343,706 - PfGW456L13_292 0.37 +0.4
343,774 + PfGW456L13_292 0.41 -1.9
343,774 + PfGW456L13_292 0.41 +0.3
343,775 - PfGW456L13_292 0.41 -0.5
343,897 + PfGW456L13_292 0.48 +0.6
343,897 + PfGW456L13_292 0.48 +0.1
343,898 - PfGW456L13_292 0.48 -0.6
343,898 - PfGW456L13_292 0.48 +0.4
343,898 - PfGW456L13_292 0.48 -0.2
343,898 - PfGW456L13_292 0.48 +0.7
344,015 - PfGW456L13_292 0.55 +0.4
344,144 - PfGW456L13_292 0.63 -0.5
344,157 - PfGW456L13_292 0.64 +0.2
344,157 - PfGW456L13_292 0.64 +0.2
344,221 + PfGW456L13_292 0.67 +0.7
344,222 - PfGW456L13_292 0.67 +0.2
344,222 - PfGW456L13_292 0.67 +0.8
344,236 + PfGW456L13_292 0.68 -0.3
344,236 + PfGW456L13_292 0.68 +1.2
344,236 + PfGW456L13_292 0.68 -0.1
344,236 + PfGW456L13_292 0.68 +0.6
344,236 + PfGW456L13_292 0.68 +1.3
344,236 + PfGW456L13_292 0.68 -0.6
344,236 + PfGW456L13_292 0.68 +0.1
344,236 + PfGW456L13_292 0.68 -0.2
344,236 + PfGW456L13_292 0.68 -0.7
344,236 + PfGW456L13_292 0.68 +0.3
344,237 - PfGW456L13_292 0.68 +0.0
344,237 - PfGW456L13_292 0.68 +0.7
344,237 - PfGW456L13_292 0.68 -0.1
344,237 - PfGW456L13_292 0.68 +0.5
344,237 - PfGW456L13_292 0.68 +0.4
344,237 - PfGW456L13_292 0.68 +0.4
344,237 - PfGW456L13_292 0.68 +0.5
344,237 - PfGW456L13_292 0.68 +0.2
344,449 - PfGW456L13_292 0.81 +0.3
344,467 + PfGW456L13_292 0.82 +0.0
344,467 + PfGW456L13_292 0.82 -1.3
344,467 + PfGW456L13_292 0.82 +0.6
344,467 + PfGW456L13_292 0.82 +1.6
344,467 + PfGW456L13_292 0.82 +1.0
344,468 - PfGW456L13_292 0.82 -0.3
344,468 - PfGW456L13_292 0.82 -1.5
344,468 - PfGW456L13_292 0.82 +1.0
344,569 + PfGW456L13_292 0.88 +1.0
344,722 + +0.4
344,752 + -0.1
344,752 + -1.2
344,752 + -0.1
344,752 + +0.2
344,752 + +0.7
344,752 + -0.1
344,752 + +0.7
344,752 + -0.8
344,752 + -0.8
344,752 + -0.0
344,752 + -0.0
344,752 + -0.0
344,752 + +0.3
344,752 + -0.3
344,752 + +0.3
344,752 + +0.7
344,753 - +0.2
344,753 - +0.1
344,753 - +0.4
344,753 - +0.6
344,753 - +0.9
344,753 - +0.3
344,753 - +0.5
344,753 - -0.3
344,753 - +0.6
344,753 - -0.1
344,768 - -0.7
344,833 + -0.3
344,834 - +1.2
345,194 + PfGW456L13_293 0.31 -0.0
345,195 - PfGW456L13_293 0.31 -0.8
345,264 - PfGW456L13_293 0.39 -0.7
345,374 + PfGW456L13_293 0.52 +0.4
345,374 + PfGW456L13_293 0.52 -0.1
345,375 - PfGW456L13_293 0.52 +0.5
345,375 - PfGW456L13_293 0.52 +1.4
345,375 - PfGW456L13_293 0.52 +0.3
345,375 - PfGW456L13_293 0.52 -1.8
345,375 - PfGW456L13_293 0.52 +0.3
345,375 - PfGW456L13_293 0.52 -0.1
345,416 + PfGW456L13_293 0.57 -1.8
345,416 + PfGW456L13_293 0.57 -1.1
345,416 + PfGW456L13_293 0.57 +1.0
345,416 + PfGW456L13_293 0.57 -1.2
345,417 - PfGW456L13_293 0.57 +1.7
345,494 + PfGW456L13_293 0.66 -0.2
345,497 + PfGW456L13_293 0.67 +0.7
345,497 + PfGW456L13_293 0.67 +0.3
345,497 + PfGW456L13_293 0.67 -0.1
345,498 - PfGW456L13_293 0.67 +0.5
345,498 - PfGW456L13_293 0.67 +0.5
345,570 + PfGW456L13_293 0.75 +0.3
345,570 + PfGW456L13_293 0.75 -0.3
345,571 - PfGW456L13_293 0.75 -0.3

Or see this region's nucleotide sequence