Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2651

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2650 and PfGW456L13_2651 are separated by 307 nucleotidesPfGW456L13_2651 and PfGW456L13_2652 are separated by 65 nucleotidesPfGW456L13_2652 and PfGW456L13_2653 are separated by 221 nucleotides PfGW456L13_2650 - Thioredoxin reductase (EC 1.8.1.9), at 2,950,866 to 2,951,825 _2650 PfGW456L13_2651 - Cell division protein FtsK, at 2,952,133 to 2,954,544 _2651 PfGW456L13_2652 - Outer membrane lipoprotein carrier protein LolA, at 2,954,610 to 2,955,233 _2652 PfGW456L13_2653 - FIG065221: Holliday junction DNA helicase, at 2,955,455 to 2,956,777 _2653 Position (kb) 2952 2953 2954 2955Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2951.335 kb on + strand, within PfGW456L13_2650at 2951.336 kb on - strand, within PfGW456L13_2650at 2951.336 kb on - strand, within PfGW456L13_2650at 2951.470 kb on + strand, within PfGW456L13_2650at 2951.515 kb on + strand, within PfGW456L13_2650at 2951.515 kb on + strand, within PfGW456L13_2650at 2951.515 kb on + strand, within PfGW456L13_2650at 2951.516 kb on - strand, within PfGW456L13_2650at 2951.516 kb on - strand, within PfGW456L13_2650at 2951.516 kb on - strand, within PfGW456L13_2650at 2951.516 kb on - strand, within PfGW456L13_2650at 2951.581 kb on + strand, within PfGW456L13_2650at 2951.756 kb on - strandat 2951.770 kb on + strandat 2951.839 kb on + strandat 2951.839 kb on + strandat 2951.901 kb on + strandat 2951.901 kb on + strandat 2951.939 kb on + strandat 2951.949 kb on + strandat 2951.949 kb on + strandat 2951.966 kb on + strandat 2951.966 kb on + strandat 2951.970 kb on + strandat 2951.970 kb on + strandat 2951.970 kb on + strandat 2951.970 kb on + strandat 2951.970 kb on + strandat 2951.970 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.994 kb on + strandat 2952.014 kb on + strandat 2952.014 kb on + strandat 2952.014 kb on + strandat 2952.045 kb on + strandat 2952.048 kb on + strandat 2952.085 kb on + strandat 2953.102 kb on + strand, within PfGW456L13_2651at 2953.102 kb on + strand, within PfGW456L13_2651at 2953.102 kb on + strand, within PfGW456L13_2651at 2953.496 kb on + strand, within PfGW456L13_2651at 2953.496 kb on + strand, within PfGW456L13_2651at 2953.496 kb on + strand, within PfGW456L13_2651at 2953.630 kb on + strand, within PfGW456L13_2651at 2953.825 kb on + strand, within PfGW456L13_2651at 2953.825 kb on + strand, within PfGW456L13_2651at 2954.149 kb on + strand, within PfGW456L13_2651at 2954.149 kb on + strand, within PfGW456L13_2651at 2954.149 kb on + strand, within PfGW456L13_2651at 2954.149 kb on + strand, within PfGW456L13_2651at 2954.149 kb on + strand, within PfGW456L13_2651at 2955.220 kb on + strandat 2955.220 kb on + strandat 2955.220 kb on + strandat 2955.220 kb on + strandat 2955.220 kb on + strandat 2955.220 kb on + strandat 2955.220 kb on + strandat 2955.221 kb on - strandat 2955.231 kb on + strandat 2955.231 kb on + strandat 2955.232 kb on - strandat 2955.232 kb on - strandat 2955.309 kb on + strandat 2955.320 kb on - strandat 2955.327 kb on + strandat 2955.327 kb on + strandat 2955.327 kb on + strandat 2955.327 kb on + strandat 2955.329 kb on + strandat 2955.329 kb on + strandat 2955.329 kb on + strandat 2955.420 kb on + strandat 2955.427 kb on + strandat 2955.427 kb on + strandat 2955.427 kb on + strandat 2955.431 kb on - strandat 2955.444 kb on - strandat 2955.449 kb on + strandat 2955.449 kb on + strandat 2955.449 kb on + strandat 2955.450 kb on - strandat 2955.450 kb on - strandat 2955.450 kb on - strandat 2955.450 kb on - strandat 2955.450 kb on - strandat 2955.528 kb on - strandat 2955.528 kb on - strandat 2955.528 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,951,335 + PfGW456L13_2650 0.49 -1.5
2,951,336 - PfGW456L13_2650 0.49 -0.4
2,951,336 - PfGW456L13_2650 0.49 +0.6
2,951,470 + PfGW456L13_2650 0.63 -0.7
2,951,515 + PfGW456L13_2650 0.68 -0.8
2,951,515 + PfGW456L13_2650 0.68 -0.7
2,951,515 + PfGW456L13_2650 0.68 -0.5
2,951,516 - PfGW456L13_2650 0.68 -0.1
2,951,516 - PfGW456L13_2650 0.68 -0.2
2,951,516 - PfGW456L13_2650 0.68 -0.5
2,951,516 - PfGW456L13_2650 0.68 +0.0
2,951,581 + PfGW456L13_2650 0.74 -0.6
2,951,756 - -0.2
2,951,770 + +0.2
2,951,839 + -2.8
2,951,839 + -0.9
2,951,901 + -1.5
2,951,901 + -2.8
2,951,939 + -1.0
2,951,949 + -3.5
2,951,949 + -3.3
2,951,966 + -1.2
2,951,966 + -4.1
2,951,970 + -0.5
2,951,970 + -1.0
2,951,970 + +0.3
2,951,970 + -2.9
2,951,970 + -1.8
2,951,970 + -1.7
2,951,972 + -1.6
2,951,972 + -2.4
2,951,972 + -1.0
2,951,972 + +0.0
2,951,972 + -1.8
2,951,972 + -1.2
2,951,972 + -1.0
2,951,972 + -1.5
2,951,972 + -1.1
2,951,972 + -2.6
2,951,972 + -0.5
2,951,972 + -1.8
2,951,972 + -1.5
2,951,994 + -1.9
2,952,014 + -3.6
2,952,014 + +0.2
2,952,014 + -0.9
2,952,045 + -0.2
2,952,048 + -2.0
2,952,085 + -2.0
2,953,102 + PfGW456L13_2651 0.40 -1.0
2,953,102 + PfGW456L13_2651 0.40 -1.8
2,953,102 + PfGW456L13_2651 0.40 -1.2
2,953,496 + PfGW456L13_2651 0.57 -1.2
2,953,496 + PfGW456L13_2651 0.57 -1.4
2,953,496 + PfGW456L13_2651 0.57 -1.2
2,953,630 + PfGW456L13_2651 0.62 -0.2
2,953,825 + PfGW456L13_2651 0.70 -0.5
2,953,825 + PfGW456L13_2651 0.70 -2.2
2,954,149 + PfGW456L13_2651 0.84 -0.8
2,954,149 + PfGW456L13_2651 0.84 -1.2
2,954,149 + PfGW456L13_2651 0.84 -0.8
2,954,149 + PfGW456L13_2651 0.84 -2.4
2,954,149 + PfGW456L13_2651 0.84 -1.8
2,955,220 + +0.4
2,955,220 + -0.5
2,955,220 + +0.3
2,955,220 + +0.1
2,955,220 + +0.4
2,955,220 + -0.3
2,955,220 + +0.3
2,955,221 - -2.5
2,955,231 + -0.5
2,955,231 + +0.8
2,955,232 - -0.8
2,955,232 - +0.7
2,955,309 + -1.0
2,955,320 - +0.7
2,955,327 + -0.6
2,955,327 + +0.5
2,955,327 + -0.0
2,955,327 + +0.6
2,955,329 + -0.4
2,955,329 + +0.7
2,955,329 + -0.8
2,955,420 + +0.3
2,955,427 + +0.9
2,955,427 + -1.2
2,955,427 + -0.8
2,955,431 - -0.3
2,955,444 - +0.3
2,955,449 + -0.8
2,955,449 + -0.6
2,955,449 + -1.0
2,955,450 - +0.9
2,955,450 - +0.6
2,955,450 - +0.5
2,955,450 - +1.2
2,955,450 - +0.1
2,955,528 - +0.6
2,955,528 - -1.5
2,955,528 - -0.1

Or see this region's nucleotide sequence