Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2554

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2553 and PfGW456L13_2554 are separated by 250 nucleotidesPfGW456L13_2554 and PfGW456L13_2555 are separated by 149 nucleotidesPfGW456L13_2555 and PfGW456L13_2556 are separated by 235 nucleotides PfGW456L13_2553 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,821,010 to 2,822,293 _2553 PfGW456L13_2554 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 2,822,544 to 2,824,940 _2554 PfGW456L13_2555 - DNA-binding protein HU-beta, at 2,825,090 to 2,825,362 _2555 PfGW456L13_2556 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 2,825,598 to 2,827,469 _2556 Position (kb) 2822 2823 2824 2825Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2821.559 kb on + strand, within PfGW456L13_2553at 2821.559 kb on + strand, within PfGW456L13_2553at 2821.560 kb on - strand, within PfGW456L13_2553at 2821.739 kb on - strand, within PfGW456L13_2553at 2822.021 kb on + strand, within PfGW456L13_2553at 2822.021 kb on + strand, within PfGW456L13_2553at 2822.107 kb on + strand, within PfGW456L13_2553at 2822.148 kb on + strand, within PfGW456L13_2553at 2822.148 kb on + strand, within PfGW456L13_2553at 2822.148 kb on + strand, within PfGW456L13_2553at 2822.161 kb on + strand, within PfGW456L13_2553at 2822.161 kb on + strand, within PfGW456L13_2553at 2822.161 kb on + strand, within PfGW456L13_2553at 2822.161 kb on + strand, within PfGW456L13_2553at 2822.161 kb on + strand, within PfGW456L13_2553at 2822.161 kb on + strand, within PfGW456L13_2553at 2822.161 kb on + strand, within PfGW456L13_2553at 2822.161 kb on + strand, within PfGW456L13_2553at 2822.165 kb on + strandat 2822.165 kb on + strandat 2822.165 kb on + strandat 2822.165 kb on + strandat 2822.165 kb on + strandat 2822.166 kb on - strandat 2822.166 kb on - strandat 2822.166 kb on - strandat 2822.166 kb on - strandat 2822.166 kb on - strandat 2822.166 kb on - strandat 2822.199 kb on + strandat 2822.200 kb on - strandat 2822.200 kb on - strandat 2822.220 kb on + strandat 2822.221 kb on - strandat 2822.221 kb on - strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.243 kb on + strandat 2822.244 kb on - strandat 2822.244 kb on - strandat 2822.244 kb on - strandat 2822.244 kb on - strandat 2822.244 kb on - strandat 2822.244 kb on - strandat 2822.244 kb on - strandat 2822.244 kb on - strandat 2822.244 kb on - strandat 2822.244 kb on - strandat 2822.244 kb on - strandat 2822.245 kb on + strandat 2822.245 kb on + strandat 2822.245 kb on + strandat 2822.245 kb on + strandat 2822.245 kb on + strandat 2822.245 kb on + strandat 2822.245 kb on + strandat 2822.245 kb on + strandat 2822.246 kb on - strandat 2822.249 kb on + strandat 2822.249 kb on + strandat 2822.249 kb on + strandat 2822.249 kb on + strandat 2822.250 kb on - strandat 2822.250 kb on - strandat 2822.291 kb on + strandat 2822.291 kb on + strandat 2822.291 kb on + strandat 2822.340 kb on - strandat 2822.423 kb on + strandat 2822.424 kb on - strandat 2822.452 kb on - strandat 2822.498 kb on + strandat 2822.498 kb on + strandat 2822.498 kb on + strandat 2822.498 kb on + strandat 2822.498 kb on + strandat 2822.498 kb on + strandat 2822.498 kb on + strandat 2822.499 kb on - strandat 2822.499 kb on - strandat 2822.499 kb on - strandat 2822.520 kb on + strandat 2822.532 kb on - strandat 2822.952 kb on + strand, within PfGW456L13_2554at 2822.952 kb on + strand, within PfGW456L13_2554at 2822.952 kb on + strand, within PfGW456L13_2554at 2822.952 kb on + strand, within PfGW456L13_2554at 2822.953 kb on - strand, within PfGW456L13_2554at 2823.214 kb on - strand, within PfGW456L13_2554at 2823.216 kb on + strand, within PfGW456L13_2554at 2823.505 kb on - strand, within PfGW456L13_2554at 2823.505 kb on - strand, within PfGW456L13_2554at 2823.541 kb on - strand, within PfGW456L13_2554at 2823.614 kb on + strand, within PfGW456L13_2554at 2823.615 kb on - strand, within PfGW456L13_2554at 2823.723 kb on + strand, within PfGW456L13_2554at 2823.723 kb on + strand, within PfGW456L13_2554at 2823.723 kb on + strand, within PfGW456L13_2554at 2823.723 kb on + strand, within PfGW456L13_2554at 2823.723 kb on + strand, within PfGW456L13_2554at 2823.723 kb on + strand, within PfGW456L13_2554at 2823.723 kb on + strand, within PfGW456L13_2554at 2823.723 kb on + strand, within PfGW456L13_2554at 2823.723 kb on + strand, within PfGW456L13_2554at 2823.723 kb on + strandat 2823.723 kb on + strand, within PfGW456L13_2554at 2823.724 kb on - strand, within PfGW456L13_2554at 2823.724 kb on - strand, within PfGW456L13_2554at 2823.724 kb on - strand, within PfGW456L13_2554at 2823.724 kb on - strand, within PfGW456L13_2554at 2823.724 kb on - strand, within PfGW456L13_2554at 2823.897 kb on + strand, within PfGW456L13_2554at 2823.897 kb on + strand, within PfGW456L13_2554at 2824.044 kb on + strand, within PfGW456L13_2554at 2824.131 kb on + strand, within PfGW456L13_2554at 2824.131 kb on + strand, within PfGW456L13_2554at 2824.134 kb on + strand, within PfGW456L13_2554at 2824.134 kb on + strand, within PfGW456L13_2554at 2824.134 kb on + strand, within PfGW456L13_2554at 2824.274 kb on + strand, within PfGW456L13_2554at 2824.529 kb on + strand, within PfGW456L13_2554at 2824.529 kb on + strand, within PfGW456L13_2554at 2824.529 kb on + strand, within PfGW456L13_2554at 2824.529 kb on + strand, within PfGW456L13_2554at 2824.778 kb on + strandat 2824.778 kb on + strandat 2824.792 kb on + strandat 2824.792 kb on + strandat 2824.845 kb on + strandat 2824.928 kb on + strandat 2824.938 kb on + strandat 2824.941 kb on + strandat 2824.945 kb on + strandat 2824.945 kb on + strandat 2824.945 kb on + strandat 2824.977 kb on + strandat 2824.977 kb on + strandat 2824.989 kb on + strandat 2824.991 kb on + strandat 2825.003 kb on + strandat 2825.003 kb on + strandat 2825.074 kb on + strandat 2825.074 kb on + strandat 2825.074 kb on + strandat 2825.074 kb on + strandat 2825.076 kb on + strandat 2825.076 kb on + strandat 2825.076 kb on + strandat 2825.086 kb on + strandat 2825.360 kb on + strandat 2825.543 kb on + strandat 2825.543 kb on + strandat 2825.645 kb on + strandat 2825.645 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,821,559 + PfGW456L13_2553 0.43 -2.0
2,821,559 + PfGW456L13_2553 0.43 -2.0
2,821,560 - PfGW456L13_2553 0.43 -2.3
2,821,739 - PfGW456L13_2553 0.57 -3.5
2,822,021 + PfGW456L13_2553 0.79 -1.5
2,822,021 + PfGW456L13_2553 0.79 -2.6
2,822,107 + PfGW456L13_2553 0.85 -4.1
2,822,148 + PfGW456L13_2553 0.89 -3.0
2,822,148 + PfGW456L13_2553 0.89 -1.5
2,822,148 + PfGW456L13_2553 0.89 -1.6
2,822,161 + PfGW456L13_2553 0.90 -2.4
2,822,161 + PfGW456L13_2553 0.90 -3.5
2,822,161 + PfGW456L13_2553 0.90 -1.0
2,822,161 + PfGW456L13_2553 0.90 -2.6
2,822,161 + PfGW456L13_2553 0.90 -1.2
2,822,161 + PfGW456L13_2553 0.90 -1.3
2,822,161 + PfGW456L13_2553 0.90 -1.8
2,822,161 + PfGW456L13_2553 0.90 -3.1
2,822,165 + -2.5
2,822,165 + -3.4
2,822,165 + -1.9
2,822,165 + -1.5
2,822,165 + -2.0
2,822,166 - -1.2
2,822,166 - -3.3
2,822,166 - -2.3
2,822,166 - -2.3
2,822,166 - -1.4
2,822,166 - +0.8
2,822,199 + -1.7
2,822,200 - -2.5
2,822,200 - -2.0
2,822,220 + -0.8
2,822,221 - -2.2
2,822,221 - +0.8
2,822,243 + +0.0
2,822,243 + +1.0
2,822,243 + -0.7
2,822,243 + -1.2
2,822,243 + -0.5
2,822,243 + -1.4
2,822,243 + -0.8
2,822,243 + -0.5
2,822,243 + -1.1
2,822,243 + -1.9
2,822,243 + +1.7
2,822,243 + +0.1
2,822,243 + +0.4
2,822,243 + +0.2
2,822,243 + -1.6
2,822,243 + -0.1
2,822,243 + -0.2
2,822,243 + +0.4
2,822,243 + -0.7
2,822,243 + +0.8
2,822,244 - -1.9
2,822,244 - -2.2
2,822,244 - +0.2
2,822,244 - +0.8
2,822,244 - -1.7
2,822,244 - -2.3
2,822,244 - +0.7
2,822,244 - +0.3
2,822,244 - -2.2
2,822,244 - +1.5
2,822,244 - -2.2
2,822,245 + -1.0
2,822,245 + -0.5
2,822,245 + -0.3
2,822,245 + -2.3
2,822,245 + +0.0
2,822,245 + +0.1
2,822,245 + -0.7
2,822,245 + -0.5
2,822,246 - -1.2
2,822,249 + +0.6
2,822,249 + -1.4
2,822,249 + +0.4
2,822,249 + -0.1
2,822,250 - +1.1
2,822,250 - -1.6
2,822,291 + +0.6
2,822,291 + -0.3
2,822,291 + +1.6
2,822,340 - +0.4
2,822,423 + -0.2
2,822,424 - +1.0
2,822,452 - +1.1
2,822,498 + +0.8
2,822,498 + +0.0
2,822,498 + +0.8
2,822,498 + +0.8
2,822,498 + +1.2
2,822,498 + -1.6
2,822,498 + -0.9
2,822,499 - +1.4
2,822,499 - +2.0
2,822,499 - -1.2
2,822,520 + +0.4
2,822,532 - +0.4
2,822,952 + PfGW456L13_2554 0.17 +0.5
2,822,952 + PfGW456L13_2554 0.17 +1.8
2,822,952 + PfGW456L13_2554 0.17 +1.1
2,822,952 + PfGW456L13_2554 0.17 +1.5
2,822,953 - PfGW456L13_2554 0.17 +2.5
2,823,214 - PfGW456L13_2554 0.28 +1.0
2,823,216 + PfGW456L13_2554 0.28 +2.2
2,823,505 - PfGW456L13_2554 0.40 +0.7
2,823,505 - PfGW456L13_2554 0.40 +0.8
2,823,541 - PfGW456L13_2554 0.42 +2.0
2,823,614 + PfGW456L13_2554 0.45 -1.2
2,823,615 - PfGW456L13_2554 0.45 +1.0
2,823,723 + PfGW456L13_2554 0.49 -0.0
2,823,723 + PfGW456L13_2554 0.49 +0.7
2,823,723 + PfGW456L13_2554 0.49 +0.8
2,823,723 + PfGW456L13_2554 0.49 +0.8
2,823,723 + PfGW456L13_2554 0.49 +1.2
2,823,723 + PfGW456L13_2554 0.49 +2.1
2,823,723 + PfGW456L13_2554 0.49 +1.2
2,823,723 + PfGW456L13_2554 0.49 +2.5
2,823,723 + PfGW456L13_2554 0.49 +0.8
2,823,723 + +3.7
2,823,723 + PfGW456L13_2554 0.49 +0.5
2,823,724 - PfGW456L13_2554 0.49 +0.4
2,823,724 - PfGW456L13_2554 0.49 +1.9
2,823,724 - PfGW456L13_2554 0.49 +0.4
2,823,724 - PfGW456L13_2554 0.49 +2.4
2,823,724 - PfGW456L13_2554 0.49 -0.9
2,823,897 + PfGW456L13_2554 0.56 +1.8
2,823,897 + PfGW456L13_2554 0.56 +0.3
2,824,044 + PfGW456L13_2554 0.63 +1.4
2,824,131 + PfGW456L13_2554 0.66 +1.0
2,824,131 + PfGW456L13_2554 0.66 -0.9
2,824,134 + PfGW456L13_2554 0.66 +2.3
2,824,134 + PfGW456L13_2554 0.66 -0.7
2,824,134 + PfGW456L13_2554 0.66 -0.4
2,824,274 + PfGW456L13_2554 0.72 +2.6
2,824,529 + PfGW456L13_2554 0.83 +1.1
2,824,529 + PfGW456L13_2554 0.83 -0.3
2,824,529 + PfGW456L13_2554 0.83 +1.0
2,824,529 + PfGW456L13_2554 0.83 +1.0
2,824,778 + +0.1
2,824,778 + -2.0
2,824,792 + -0.2
2,824,792 + -0.2
2,824,845 + +0.4
2,824,928 + -0.4
2,824,938 + -1.5
2,824,941 + -0.0
2,824,945 + +0.5
2,824,945 + -0.7
2,824,945 + +0.5
2,824,977 + +0.4
2,824,977 + +1.6
2,824,989 + +0.1
2,824,991 + +1.1
2,825,003 + +0.2
2,825,003 + -0.6
2,825,074 + +0.3
2,825,074 + -0.7
2,825,074 + -1.0
2,825,074 + -2.2
2,825,076 + -0.9
2,825,076 + +0.4
2,825,076 + -1.5
2,825,086 + -0.5
2,825,360 + +0.5
2,825,543 + -0.5
2,825,543 + +0.8
2,825,645 + +0.1
2,825,645 + -0.9

Or see this region's nucleotide sequence