Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2535

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2534 and PfGW456L13_2535 are separated by 9 nucleotidesPfGW456L13_2535 and PfGW456L13_2536 are separated by 10 nucleotides PfGW456L13_2534 - Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), at 2,801,711 to 2,802,778 _2534 PfGW456L13_2535 - Enoyl-CoA hydratase (EC 4.2.1.17), at 2,802,788 to 2,803,543 _2535 PfGW456L13_2536 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 2,803,554 to 2,804,720 _2536 Position (kb) 2802 2803 2804Strain fitness (log2 ratio) -3 -2 -1 0 1at 2801.939 kb on + strand, within PfGW456L13_2534at 2801.939 kb on + strand, within PfGW456L13_2534at 2801.940 kb on - strand, within PfGW456L13_2534at 2801.940 kb on - strand, within PfGW456L13_2534at 2801.940 kb on - strand, within PfGW456L13_2534at 2801.940 kb on - strand, within PfGW456L13_2534at 2801.940 kb on - strand, within PfGW456L13_2534at 2801.940 kb on - strandat 2802.002 kb on + strand, within PfGW456L13_2534at 2802.002 kb on + strand, within PfGW456L13_2534at 2802.296 kb on - strand, within PfGW456L13_2534at 2802.776 kb on + strandat 2802.800 kb on - strandat 2803.031 kb on + strand, within PfGW456L13_2535at 2803.032 kb on - strand, within PfGW456L13_2535at 2803.032 kb on - strand, within PfGW456L13_2535at 2803.247 kb on + strand, within PfGW456L13_2535at 2803.247 kb on + strand, within PfGW456L13_2535at 2803.247 kb on + strand, within PfGW456L13_2535at 2803.247 kb on + strand, within PfGW456L13_2535at 2803.247 kb on + strand, within PfGW456L13_2535at 2803.247 kb on + strand, within PfGW456L13_2535at 2803.247 kb on + strand, within PfGW456L13_2535at 2803.247 kb on + strand, within PfGW456L13_2535at 2803.248 kb on - strand, within PfGW456L13_2535at 2803.248 kb on - strand, within PfGW456L13_2535at 2803.248 kb on - strand, within PfGW456L13_2535at 2803.248 kb on - strand, within PfGW456L13_2535at 2803.248 kb on - strand, within PfGW456L13_2535at 2803.248 kb on - strand, within PfGW456L13_2535at 2803.440 kb on - strand, within PfGW456L13_2535at 2803.550 kb on - strandat 2803.566 kb on + strandat 2803.566 kb on + strandat 2803.566 kb on + strandat 2803.566 kb on + strandat 2803.566 kb on + strandat 2803.566 kb on + strandat 2803.567 kb on - strandat 2803.567 kb on - strandat 2803.567 kb on - strandat 2803.567 kb on - strandat 2803.624 kb on + strandat 2803.788 kb on + strand, within PfGW456L13_2536at 2803.788 kb on + strand, within PfGW456L13_2536at 2803.788 kb on + strand, within PfGW456L13_2536at 2803.788 kb on + strand, within PfGW456L13_2536at 2803.788 kb on + strand, within PfGW456L13_2536at 2803.789 kb on - strandat 2803.789 kb on - strand, within PfGW456L13_2536at 2803.789 kb on - strand, within PfGW456L13_2536at 2803.789 kb on - strand, within PfGW456L13_2536at 2803.789 kb on - strand, within PfGW456L13_2536at 2803.789 kb on - strand, within PfGW456L13_2536at 2803.789 kb on - strand, within PfGW456L13_2536at 2804.001 kb on + strand, within PfGW456L13_2536at 2804.001 kb on + strand, within PfGW456L13_2536at 2804.001 kb on + strand, within PfGW456L13_2536at 2804.001 kb on + strand, within PfGW456L13_2536at 2804.346 kb on + strand, within PfGW456L13_2536at 2804.346 kb on + strand, within PfGW456L13_2536at 2804.347 kb on - strand, within PfGW456L13_2536at 2804.427 kb on + strand, within PfGW456L13_2536at 2804.442 kb on + strand, within PfGW456L13_2536at 2804.442 kb on + strand, within PfGW456L13_2536at 2804.442 kb on + strand, within PfGW456L13_2536at 2804.443 kb on - strand, within PfGW456L13_2536at 2804.443 kb on - strand, within PfGW456L13_2536at 2804.443 kb on - strand, within PfGW456L13_2536at 2804.443 kb on - strand, within PfGW456L13_2536

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,801,939 + PfGW456L13_2534 0.21 -0.8
2,801,939 + PfGW456L13_2534 0.21 -0.4
2,801,940 - PfGW456L13_2534 0.21 +1.0
2,801,940 - PfGW456L13_2534 0.21 -0.3
2,801,940 - PfGW456L13_2534 0.21 +0.3
2,801,940 - PfGW456L13_2534 0.21 -0.4
2,801,940 - PfGW456L13_2534 0.21 -0.2
2,801,940 - -0.2
2,802,002 + PfGW456L13_2534 0.27 +0.8
2,802,002 + PfGW456L13_2534 0.27 +0.8
2,802,296 - PfGW456L13_2534 0.55 -0.4
2,802,776 + +0.0
2,802,800 - -0.1
2,803,031 + PfGW456L13_2535 0.32 -1.0
2,803,032 - PfGW456L13_2535 0.32 +0.4
2,803,032 - PfGW456L13_2535 0.32 -0.6
2,803,247 + PfGW456L13_2535 0.61 -1.4
2,803,247 + PfGW456L13_2535 0.61 +0.0
2,803,247 + PfGW456L13_2535 0.61 +0.6
2,803,247 + PfGW456L13_2535 0.61 +0.6
2,803,247 + PfGW456L13_2535 0.61 +0.9
2,803,247 + PfGW456L13_2535 0.61 +1.5
2,803,247 + PfGW456L13_2535 0.61 -0.7
2,803,247 + PfGW456L13_2535 0.61 +0.4
2,803,248 - PfGW456L13_2535 0.61 -0.5
2,803,248 - PfGW456L13_2535 0.61 -1.2
2,803,248 - PfGW456L13_2535 0.61 -1.1
2,803,248 - PfGW456L13_2535 0.61 -1.1
2,803,248 - PfGW456L13_2535 0.61 -0.6
2,803,248 - PfGW456L13_2535 0.61 +0.7
2,803,440 - PfGW456L13_2535 0.86 +0.0
2,803,550 - -0.7
2,803,566 + +0.1
2,803,566 + -1.0
2,803,566 + +0.6
2,803,566 + -0.4
2,803,566 + -1.4
2,803,566 + +0.7
2,803,567 - -1.7
2,803,567 - +1.2
2,803,567 - -3.2
2,803,567 - -1.1
2,803,624 + -3.0
2,803,788 + PfGW456L13_2536 0.20 -0.2
2,803,788 + PfGW456L13_2536 0.20 -0.2
2,803,788 + PfGW456L13_2536 0.20 +0.3
2,803,788 + PfGW456L13_2536 0.20 +0.4
2,803,788 + PfGW456L13_2536 0.20 +0.3
2,803,789 - +0.9
2,803,789 - PfGW456L13_2536 0.20 +0.9
2,803,789 - PfGW456L13_2536 0.20 +0.7
2,803,789 - PfGW456L13_2536 0.20 -0.9
2,803,789 - PfGW456L13_2536 0.20 +0.1
2,803,789 - PfGW456L13_2536 0.20 +0.1
2,803,789 - PfGW456L13_2536 0.20 -0.1
2,804,001 + PfGW456L13_2536 0.38 +0.0
2,804,001 + PfGW456L13_2536 0.38 -0.4
2,804,001 + PfGW456L13_2536 0.38 +0.9
2,804,001 + PfGW456L13_2536 0.38 +0.2
2,804,346 + PfGW456L13_2536 0.68 -1.0
2,804,346 + PfGW456L13_2536 0.68 +0.5
2,804,347 - PfGW456L13_2536 0.68 +0.1
2,804,427 + PfGW456L13_2536 0.75 -0.6
2,804,442 + PfGW456L13_2536 0.76 +0.5
2,804,442 + PfGW456L13_2536 0.76 -0.4
2,804,442 + PfGW456L13_2536 0.76 +0.0
2,804,443 - PfGW456L13_2536 0.76 +0.1
2,804,443 - PfGW456L13_2536 0.76 +0.3
2,804,443 - PfGW456L13_2536 0.76 +0.1
2,804,443 - PfGW456L13_2536 0.76 +0.4

Or see this region's nucleotide sequence