Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2424

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2423 and PfGW456L13_2424 are separated by 34 nucleotidesPfGW456L13_2424 and PfGW456L13_2425 overlap by 14 nucleotidesPfGW456L13_2425 and PfGW456L13_2426 are separated by 8 nucleotides PfGW456L13_2423 - Phenylacetate-CoA oxygenase/reductase, PaaK subunit, at 2,688,053 to 2,689,129 _2423 PfGW456L13_2424 - Phenylacetate-CoA oxygenase, PaaJ subunit, at 2,689,164 to 2,689,697 _2424 PfGW456L13_2425 - Phenylacetate-CoA oxygenase, PaaI subunit, at 2,689,684 to 2,690,445 _2425 PfGW456L13_2426 - Phenylacetate-CoA oxygenase, PaaH subunit, at 2,690,454 to 2,690,735 _2426 Position (kb) 2689 2690Strain fitness (log2 ratio) -2 -1 0 1at 2688.567 kb on + strand, within PfGW456L13_2423at 2688.627 kb on + strand, within PfGW456L13_2423at 2688.628 kb on - strand, within PfGW456L13_2423at 2688.690 kb on + strand, within PfGW456L13_2423at 2688.690 kb on + strand, within PfGW456L13_2423at 2688.690 kb on + strand, within PfGW456L13_2423at 2688.786 kb on + strand, within PfGW456L13_2423at 2688.786 kb on + strand, within PfGW456L13_2423at 2688.786 kb on + strand, within PfGW456L13_2423at 2688.786 kb on + strand, within PfGW456L13_2423at 2688.787 kb on - strand, within PfGW456L13_2423at 2688.787 kb on - strand, within PfGW456L13_2423at 2688.904 kb on + strand, within PfGW456L13_2423at 2688.971 kb on + strand, within PfGW456L13_2423at 2689.505 kb on - strand, within PfGW456L13_2424at 2689.505 kb on - strand, within PfGW456L13_2424at 2689.744 kb on + strandat 2689.787 kb on + strand, within PfGW456L13_2425at 2689.787 kb on + strand, within PfGW456L13_2425at 2689.787 kb on + strand, within PfGW456L13_2425at 2689.787 kb on + strand, within PfGW456L13_2425at 2689.788 kb on - strand, within PfGW456L13_2425at 2689.788 kb on - strand, within PfGW456L13_2425at 2690.039 kb on + strand, within PfGW456L13_2425at 2690.039 kb on + strand, within PfGW456L13_2425at 2690.039 kb on + strand, within PfGW456L13_2425at 2690.039 kb on + strand, within PfGW456L13_2425at 2690.039 kb on + strand, within PfGW456L13_2425at 2690.039 kb on + strand, within PfGW456L13_2425at 2690.040 kb on - strand, within PfGW456L13_2425at 2690.040 kb on - strand, within PfGW456L13_2425at 2690.040 kb on - strand, within PfGW456L13_2425at 2690.040 kb on - strand, within PfGW456L13_2425at 2690.040 kb on - strand, within PfGW456L13_2425at 2690.040 kb on - strand, within PfGW456L13_2425at 2690.136 kb on - strand, within PfGW456L13_2425at 2690.417 kb on + strandat 2690.418 kb on - strandat 2690.439 kb on + strandat 2690.440 kb on - strandat 2690.504 kb on - strand, within PfGW456L13_2426at 2690.614 kb on + strand, within PfGW456L13_2426at 2690.615 kb on - strand, within PfGW456L13_2426at 2690.615 kb on - strand, within PfGW456L13_2426

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,688,567 + PfGW456L13_2423 0.48 -0.9
2,688,627 + PfGW456L13_2423 0.53 +1.7
2,688,628 - PfGW456L13_2423 0.53 -2.1
2,688,690 + PfGW456L13_2423 0.59 -0.7
2,688,690 + PfGW456L13_2423 0.59 -1.5
2,688,690 + PfGW456L13_2423 0.59 -0.9
2,688,786 + PfGW456L13_2423 0.68 -0.4
2,688,786 + PfGW456L13_2423 0.68 -1.5
2,688,786 + PfGW456L13_2423 0.68 -0.4
2,688,786 + PfGW456L13_2423 0.68 -0.1
2,688,787 - PfGW456L13_2423 0.68 -1.2
2,688,787 - PfGW456L13_2423 0.68 -0.9
2,688,904 + PfGW456L13_2423 0.79 +0.1
2,688,971 + PfGW456L13_2423 0.85 -1.1
2,689,505 - PfGW456L13_2424 0.64 -2.1
2,689,505 - PfGW456L13_2424 0.64 -1.5
2,689,744 + -0.5
2,689,787 + PfGW456L13_2425 0.14 -0.5
2,689,787 + PfGW456L13_2425 0.14 -0.4
2,689,787 + PfGW456L13_2425 0.14 -0.1
2,689,787 + PfGW456L13_2425 0.14 -0.7
2,689,788 - PfGW456L13_2425 0.14 -0.9
2,689,788 - PfGW456L13_2425 0.14 -1.9
2,690,039 + PfGW456L13_2425 0.47 +0.4
2,690,039 + PfGW456L13_2425 0.47 -0.3
2,690,039 + PfGW456L13_2425 0.47 -0.2
2,690,039 + PfGW456L13_2425 0.47 -0.1
2,690,039 + PfGW456L13_2425 0.47 -0.3
2,690,039 + PfGW456L13_2425 0.47 +0.1
2,690,040 - PfGW456L13_2425 0.47 -0.6
2,690,040 - PfGW456L13_2425 0.47 -0.6
2,690,040 - PfGW456L13_2425 0.47 -1.2
2,690,040 - PfGW456L13_2425 0.47 -0.9
2,690,040 - PfGW456L13_2425 0.47 -0.1
2,690,040 - PfGW456L13_2425 0.47 -2.5
2,690,136 - PfGW456L13_2425 0.59 +0.1
2,690,417 + +0.5
2,690,418 - -1.2
2,690,439 + -1.3
2,690,440 - -0.7
2,690,504 - PfGW456L13_2426 0.18 -1.7
2,690,614 + PfGW456L13_2426 0.57 +0.2
2,690,615 - PfGW456L13_2426 0.57 -1.4
2,690,615 - PfGW456L13_2426 0.57 -1.4

Or see this region's nucleotide sequence